Wall clock time and date at job start Sun Mar 7 2021 09:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99491 * 2 1 4 4 C 1.38668 * 120.00376 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38684 * 119.99625 * 359.76270 * 5 4 3 7 7 O 1.35983 * 119.99982 * 180.23434 * 6 5 4 8 8 C 1.42898 * 117.00200 * 0.25700 * 7 6 5 9 9 C 1.50702 * 109.47275 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99909 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99746 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.63294 * 359.71263 * 11 9 8 13 13 C 1.52763 * 109.00650 * 233.58800 * 12 11 9 14 14 C 1.53038 * 109.38343 * 305.58808 * 13 12 11 15 15 C 1.53036 * 109.53847 * 61.24486 * 14 13 12 16 16 Si 1.86303 * 109.49756 * 178.68098 * 15 14 13 17 17 C 1.86303 * 109.46929 * 179.83751 * 16 15 14 18 18 C 1.86293 * 109.47062 * 299.83935 * 16 15 14 19 19 C 1.86295 * 109.46964 * 59.83932 * 16 15 14 20 20 C 1.46934 * 120.62708 * 180.02562 * 11 9 8 21 21 C 1.38714 * 119.99906 * 0.49188 * 6 5 4 22 22 C 1.50701 * 119.99918 * 179.76442 * 21 6 5 23 23 O 1.42895 * 109.47079 * 74.72758 * 22 21 6 24 24 Si 1.86301 * 109.47149 * 194.72253 * 22 21 6 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 C 1.38113 * 120.00245 * 359.48904 * 21 6 5 29 29 H 1.08994 * 109.47337 * 300.00012 * 1 2 3 30 30 H 1.09008 * 109.47339 * 59.99883 * 1 2 3 31 31 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99948 * 0.02562 * 4 3 2 33 33 H 1.07996 * 120.00569 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47320 * 299.99711 * 8 7 6 35 35 H 1.08995 * 109.47202 * 59.99354 * 8 7 6 36 36 H 1.08998 * 109.58297 * 353.42281 * 12 11 9 37 37 H 1.08998 * 109.57747 * 113.85007 * 12 11 9 38 38 H 1.09007 * 109.55727 * 185.55577 * 13 12 11 39 39 H 1.08995 * 109.36033 * 65.50243 * 13 12 11 40 40 H 1.09001 * 109.46067 * 301.22395 * 14 13 12 41 41 H 1.09002 * 109.45701 * 181.26524 * 14 13 12 42 42 H 1.09004 * 109.49728 * 58.58404 * 15 14 13 43 43 H 1.09002 * 109.46939 * 60.00128 * 17 16 15 44 44 H 1.08998 * 109.46941 * 180.02562 * 17 16 15 45 45 H 1.08997 * 109.47188 * 300.00153 * 17 16 15 46 46 H 1.08996 * 109.47406 * 59.99910 * 18 16 15 47 47 H 1.09007 * 109.47200 * 180.02562 * 18 16 15 48 48 H 1.09002 * 109.47543 * 299.99692 * 18 16 15 49 49 H 1.09003 * 109.47539 * 60.00040 * 19 16 15 50 50 H 1.08998 * 109.46998 * 179.97438 * 19 16 15 51 51 H 1.09003 * 109.47628 * 299.99688 * 19 16 15 52 52 H 1.08995 * 109.58047 * 246.15492 * 20 11 9 53 53 H 1.08997 * 109.58241 * 6.57761 * 20 11 9 54 54 H 1.09001 * 109.47380 * 314.72155 * 22 21 6 55 55 H 0.96708 * 113.99763 * 299.99687 * 23 22 21 56 56 H 1.07999 * 120.00114 * 180.25118 * 28 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2910 2.3747 0.0005 5 6 1.9181 3.6056 0.0011 6 6 3.3030 3.6782 0.0060 7 8 3.9203 4.8899 0.0114 8 6 3.0804 6.0459 0.0173 9 6 3.9346 7.2875 0.0220 10 8 5.1436 7.1917 0.0209 11 7 3.3549 8.5042 0.0284 12 6 1.8916 8.6363 0.0246 13 6 1.4769 9.5428 -1.1330 14 6 2.2282 10.8723 -1.0313 15 6 3.7340 10.6181 -1.1302 16 14 4.6454 12.2408 -1.0464 17 6 6.4787 11.9301 -1.1619 18 6 4.1093 13.3278 -2.4612 19 6 4.2595 13.0871 0.5677 20 6 4.1744 9.7238 0.0325 21 6 4.0585 2.5149 0.0002 22 6 5.5635 2.5938 0.0002 23 8 6.0208 2.9668 1.3016 24 14 6.2725 0.9321 -0.4545 25 1 5.7972 0.5443 -1.8069 26 1 5.8300 -0.0826 0.5354 27 1 7.7555 1.0096 -0.4539 28 6 3.4316 1.2843 0.0000 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2125 2.3181 0.0014 33 1 1.3299 4.5114 0.0019 34 1 2.4507 6.0421 -0.8724 35 1 2.4516 6.0336 0.9074 36 1 1.4364 7.6539 -0.1013 37 1 1.5621 9.0763 0.9658 38 1 0.4036 9.7269 -1.0859 39 1 1.7223 9.0577 -2.0777 40 1 2.0017 11.3451 -0.0756 41 1 1.9165 11.5285 -1.8439 42 1 3.9581 10.1228 -2.0750 43 1 6.7044 11.4349 -2.1063 44 1 7.0119 12.8794 -1.1124 45 1 6.7923 11.2941 -0.3341 46 1 3.0368 13.5096 -2.3936 47 1 4.6429 14.2771 -2.4125 48 1 4.3352 12.8327 -3.4057 49 1 4.5731 12.4511 1.3956 50 1 4.7930 14.0363 0.6170 51 1 3.1868 13.2689 0.6354 52 1 4.0351 10.2543 0.9744 53 1 5.2247 9.4586 -0.0881 54 1 5.8883 3.3386 -0.7264 55 1 5.6902 3.8237 1.6041 56 1 4.0198 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567694_4974302.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:10:34 Heat of formation + Delta-G solvation = -152.926453 kcal Electronic energy + Delta-G solvation = -33969.333860 eV Core-core repulsion = 29581.863696 eV Total energy + Delta-G solvation = -4387.470163 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89733 -41.15415 -39.98028 -38.50425 -37.97470 -36.94025 -34.03518 -32.85224 -32.29257 -30.97979 -29.59376 -29.19783 -28.43140 -28.32217 -27.99450 -26.60592 -26.07259 -24.07619 -23.55850 -22.42700 -21.71824 -20.01859 -19.63233 -18.89773 -18.26355 -18.01762 -17.65204 -17.47622 -16.89882 -16.65462 -16.27104 -15.85373 -15.65105 -15.61726 -15.46363 -15.27590 -14.97421 -14.77603 -14.60231 -14.30042 -14.10239 -14.06844 -13.95660 -13.82837 -13.67315 -13.57814 -13.52609 -13.44638 -13.19994 -13.10813 -13.05480 -13.00168 -12.57701 -12.51428 -12.29559 -12.26984 -12.05408 -11.83643 -11.78107 -11.52798 -11.47140 -11.25637 -11.12031 -11.01313 -10.74920 -10.70605 -10.27753 -10.12802 -9.63317 -8.84936 0.03201 0.30514 1.14067 1.35995 1.43950 1.45142 1.48267 1.87418 1.89904 1.97612 2.02006 2.31218 2.46965 2.52323 2.71983 3.30157 3.51770 3.67900 3.82072 3.86967 3.97594 3.99334 4.03901 4.06813 4.09729 4.10880 4.18424 4.20238 4.32251 4.40986 4.41647 4.47420 4.60263 4.66331 4.70815 4.75402 4.76297 4.77670 4.84043 4.85692 4.86540 4.88514 4.89587 4.95738 5.01467 5.04408 5.10073 5.17213 5.22867 5.28582 5.37778 5.46050 5.50586 5.56959 5.65675 5.70622 6.12120 6.30593 6.41433 6.54876 7.03076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.089 3.911 4 C -0.159 4.159 5 C -0.157 4.157 6 C 0.095 3.905 7 O -0.312 6.312 8 C 0.040 3.960 9 C 0.508 3.492 10 O -0.572 6.572 11 N -0.601 5.601 12 C 0.095 3.905 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.394 4.394 16 Si 1.084 2.916 17 C -0.477 4.477 18 C -0.459 4.459 19 C -0.458 4.458 20 C 0.117 3.883 21 C -0.116 4.116 22 C -0.089 4.089 23 O -0.549 6.549 24 Si 1.036 2.964 25 H -0.239 1.239 26 H -0.260 1.260 27 H -0.271 1.271 28 C -0.137 4.137 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.070 0.930 54 H 0.077 0.923 55 H 0.375 0.625 56 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 4.959 -0.970 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.178 4.178 5 C -0.176 4.176 6 C 0.050 3.950 7 O -0.226 6.226 8 C -0.038 4.038 9 C 0.296 3.704 10 O -0.451 6.451 11 N -0.335 5.335 12 C -0.027 4.027 13 C -0.173 4.173 14 C -0.149 4.149 15 C -0.458 4.458 16 Si 1.274 2.726 17 C -0.581 4.581 18 C -0.566 4.566 19 C -0.565 4.565 20 C -0.004 4.004 21 C -0.117 4.117 22 C -0.197 4.197 23 O -0.356 6.356 24 Si 0.856 3.144 25 H -0.162 1.162 26 H -0.184 1.184 27 H -0.196 1.196 28 C -0.155 4.155 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.098 0.902 52 H 0.104 0.896 53 H 0.088 0.912 54 H 0.095 0.905 55 H 0.223 0.777 56 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.574 3.370 -1.235 10.225 hybrid contribution -0.402 1.106 0.076 1.179 sum -9.975 4.476 -1.160 10.995 Atomic orbital electron populations 1.23366 0.76223 1.05601 1.02517 1.86082 1.23600 1.26583 1.89013 1.18970 0.91836 0.85429 0.99326 1.21401 1.01596 0.90761 1.03998 1.21381 0.92108 0.99928 1.04156 1.18740 0.91652 0.84190 1.00435 1.86094 1.35400 1.11757 1.89310 1.22751 0.92713 0.82096 1.06226 1.20528 0.88214 0.85349 0.76312 1.90744 1.16495 1.86967 1.50942 1.48207 1.08681 1.04600 1.72035 1.22065 0.77420 1.02510 1.00672 1.21864 1.01433 0.96072 0.97918 1.21284 0.92531 0.97542 1.03549 1.26562 1.04406 1.14649 1.00159 0.78081 0.63759 0.64264 0.66509 1.26499 1.23141 1.04598 1.03906 1.26251 1.06360 1.10042 1.13973 1.26250 1.05792 1.07810 1.16655 1.21488 0.95454 0.84128 0.99331 1.19421 0.96412 0.90670 1.05195 1.25309 0.92275 1.13486 0.88581 1.86630 1.74189 1.42491 1.32270 0.84204 0.78224 0.72240 0.79732 1.16196 1.18435 1.19573 1.20285 0.92876 0.97237 1.05106 0.91366 0.91246 0.86848 0.81926 0.81423 0.86365 0.85965 0.87937 0.89156 0.88643 0.92392 0.90139 0.90371 0.90663 0.92077 0.91296 0.91977 0.90366 0.91378 0.91669 0.91305 0.91402 0.90201 0.89644 0.91161 0.90477 0.77654 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.48 10.50 -93.40 -0.98 -2.46 16 3 C 0.09 0.42 6.69 22.49 0.15 0.57 16 4 C -0.16 0.16 9.03 22.35 0.20 0.36 16 5 C -0.16 0.28 9.03 22.36 0.20 0.49 16 6 C 0.09 0.39 6.61 22.49 0.15 0.54 16 7 O -0.31 -1.62 8.54 -74.32 -0.64 -2.25 16 8 C 0.04 -0.10 3.57 71.24 0.25 0.16 16 9 C 0.51 2.10 7.78 87.66 0.68 2.78 16 10 O -0.57 -8.48 15.91 16.00 0.25 -8.23 16 11 N -0.60 1.00 2.98 -819.80 -2.44 -1.45 16 12 C 0.09 -0.90 6.31 86.22 0.54 -0.35 16 13 C -0.13 1.28 6.06 30.53 0.19 1.47 16 14 C -0.11 0.95 4.54 30.62 0.14 1.09 16 15 C -0.39 1.98 1.88 30.66 0.06 2.04 16 16 Si 1.08 -7.02 10.67 68.60 0.73 -6.28 16 17 C -0.48 0.33 8.65 113.37 0.98 1.31 16 18 C -0.46 2.26 8.65 113.37 0.98 3.24 16 19 C -0.46 2.68 8.61 113.37 0.98 3.65 16 20 C 0.12 -0.13 5.09 86.35 0.44 0.31 16 21 C -0.12 -0.85 5.28 -19.78 -0.10 -0.95 16 22 C -0.09 -0.75 2.33 71.24 0.17 -0.58 16 23 O -0.55 -5.87 12.65 -148.98 -1.89 -7.76 16 24 Si 1.04 7.00 25.74 68.60 1.77 8.77 16 25 H -0.24 -1.17 7.11 99.48 0.71 -0.47 16 26 H -0.26 -2.05 6.73 99.48 0.67 -1.38 16 27 H -0.27 -2.40 7.11 99.48 0.71 -1.70 16 28 C -0.14 -1.00 8.59 22.36 0.19 -0.80 16 29 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 30 H 0.07 -0.51 7.66 -2.38 -0.02 -0.53 16 31 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.16 -1.17 6.29 -2.91 -0.02 -1.19 16 33 H 0.17 -1.63 6.29 -2.91 -0.02 -1.65 16 34 H 0.12 -0.97 7.19 -2.39 -0.02 -0.98 16 35 H 0.12 -1.08 7.48 -2.39 -0.02 -1.09 16 36 H 0.10 -1.44 5.93 -2.39 -0.01 -1.46 16 37 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.10 -1.20 8.14 -2.38 -0.02 -1.22 16 39 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.08 -0.84 7.88 -2.39 -0.02 -0.86 16 41 H 0.08 -0.74 7.71 -2.39 -0.02 -0.76 16 42 H 0.07 -0.18 7.97 -2.39 -0.02 -0.19 16 43 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 44 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 45 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 46 H 0.08 -0.50 7.74 -2.39 -0.02 -0.52 16 47 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 48 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 49 H 0.07 -0.36 7.60 -2.39 -0.02 -0.38 16 50 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 51 H 0.08 -0.60 7.85 -2.39 -0.02 -0.61 16 52 H 0.09 -0.36 7.44 -2.39 -0.02 -0.38 16 53 H 0.07 0.30 6.95 -2.39 -0.02 0.29 16 54 H 0.08 0.64 7.83 -2.39 -0.02 0.62 16 55 H 0.37 2.94 8.57 -74.05 -0.63 2.30 16 56 H 0.14 0.95 4.89 -2.91 -0.01 0.94 16 Total: 0.00 -23.37 437.72 5.07 -18.30 By element: Atomic # 1 Polarization: -15.93 SS G_CDS: 0.96 Total: -14.97 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 7.31 Total: 16.33 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -2.44 Total: -1.45 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -3.25 Total: -20.70 kcal Atomic # 14 Polarization: -0.01 SS G_CDS: 2.50 Total: 2.49 kcal Total: -23.37 5.07 -18.30 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567694_4974302.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.630 kcal (2) G-P(sol) polarization free energy of solvation -23.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds