Wall clock time and date at job start Sun Mar 7 2021 09:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38519 * 120.06958 * 359.72831 * 3 2 1 5 5 C 1.38296 * 119.99696 * 179.74377 * 4 3 2 6 6 C 1.50701 * 119.92580 * 180.23141 * 5 4 3 7 7 O 1.42903 * 109.47261 * 300.27493 * 6 5 4 8 8 Si 1.86295 * 109.47147 * 180.27619 * 6 5 4 9 9 H 1.48505 * 109.47118 * 59.99881 * 8 6 5 10 10 H 1.48498 * 109.47234 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46989 * 300.00353 * 8 6 5 12 12 C 1.38203 * 120.14679 * 0.51103 * 5 4 3 13 13 C 1.38288 * 120.14554 * 359.76377 * 12 5 4 14 14 C 1.38522 * 119.99990 * 359.97438 * 13 12 5 15 15 O 1.35994 * 120.07549 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99839 * 0.02908 * 15 14 13 17 17 C 1.50695 * 109.47370 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99773 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00497 * 179.97438 * 17 16 15 20 20 C 1.46937 * 120.62935 * 359.72721 * 19 17 16 21 21 C 1.52765 * 109.00523 * 233.58145 * 20 19 17 22 22 C 1.53042 * 109.38137 * 305.58380 * 21 20 19 23 23 C 1.53041 * 109.53805 * 61.24282 * 22 21 20 24 24 Si 1.86303 * 109.49629 * 178.68176 * 23 22 21 25 25 C 1.86296 * 109.47031 * 179.83966 * 24 23 22 26 26 C 1.86300 * 109.47006 * 299.83838 * 24 23 22 27 27 C 1.86297 * 109.47154 * 59.83772 * 24 23 22 28 28 C 1.46929 * 120.63716 * 180.02562 * 19 17 16 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 32 32 H 1.08002 * 120.00791 * 359.97438 * 4 3 2 33 33 H 1.09002 * 109.47150 * 60.27802 * 6 5 4 34 34 H 0.96692 * 114.00195 * 300.00172 * 7 6 5 35 35 H 1.07996 * 119.92818 * 179.74666 * 12 5 4 36 36 H 1.07992 * 120.00165 * 179.97438 * 13 12 5 37 37 H 1.09003 * 109.46967 * 299.99497 * 16 15 14 38 38 H 1.08999 * 109.47403 * 59.99407 * 16 15 14 39 39 H 1.09001 * 109.58125 * 353.41063 * 20 19 17 40 40 H 1.08993 * 109.59053 * 113.83996 * 20 19 17 41 41 H 1.08997 * 109.56197 * 185.55011 * 21 20 19 42 42 H 1.09003 * 109.35886 * 65.49711 * 21 20 19 43 43 H 1.09001 * 109.45712 * 301.22049 * 22 21 20 44 44 H 1.09002 * 109.45652 * 181.26212 * 22 21 20 45 45 H 1.09003 * 109.49673 * 58.58744 * 23 22 21 46 46 H 1.09002 * 109.47111 * 60.00005 * 25 24 23 47 47 H 1.08999 * 109.46857 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.46892 * 299.99992 * 25 24 23 49 49 H 1.08999 * 109.47419 * 59.99844 * 26 24 23 50 50 H 1.08999 * 109.47190 * 179.97438 * 26 24 23 51 51 H 1.09002 * 109.47294 * 300.00092 * 26 24 23 52 52 H 1.08995 * 109.47070 * 59.99824 * 27 24 23 53 53 H 1.08999 * 109.47144 * 180.02562 * 27 24 23 54 54 H 1.09001 * 109.47395 * 299.99902 * 27 24 23 55 55 H 1.08999 * 109.58453 * 246.16009 * 28 19 17 56 56 H 1.09002 * 109.58290 * 6.58444 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2936 2.3743 -0.0057 5 6 1.9230 3.6057 -0.0003 6 6 1.1023 4.8696 -0.0012 7 8 0.2783 4.9017 -1.1683 8 14 2.2371 6.3470 -0.0016 9 1 3.0943 6.3125 -1.2138 10 1 1.4284 7.5925 -0.0019 11 1 3.0935 6.3137 1.2112 12 6 3.3031 3.6798 0.0001 13 6 4.0606 2.5229 0.0000 14 6 3.4364 1.2862 0.0001 15 8 4.1799 0.1475 -0.0005 16 6 5.6007 0.3005 -0.0005 17 6 6.2523 -1.0583 -0.0006 18 8 5.5673 -2.0593 -0.0001 19 7 7.5960 -1.1614 -0.0012 20 6 8.4392 0.0419 -0.0078 21 6 9.4260 -0.0484 -1.1704 22 6 10.2054 -1.3619 -1.0741 23 6 9.2348 -2.5413 -1.1694 24 14 10.1888 -4.1396 -1.0923 25 6 9.0061 -5.5747 -1.2035 26 6 11.3913 -4.2143 -2.5133 27 6 11.1231 -4.2281 0.5171 28 6 8.2459 -2.4792 -0.0018 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 0.2150 2.3193 -0.0105 33 1 0.4732 4.8950 0.8885 34 1 0.7723 4.8817 -1.9993 35 1 3.7909 4.6433 0.0001 36 1 5.1389 2.5835 -0.0001 37 1 5.9069 0.8506 -0.8904 38 1 5.9071 0.8499 0.8896 39 1 7.8132 0.9259 -0.1295 40 1 8.9895 0.1077 0.9307 41 1 10.1202 0.7907 -1.1260 42 1 8.8782 -0.0186 -2.1124 43 1 10.7331 -1.4020 -0.1212 44 1 10.9256 -1.4175 -1.8904 45 1 8.6889 -2.4880 -2.1115 46 1 8.4595 -5.5230 -2.1451 47 1 9.5644 -6.5099 -1.1588 48 1 8.3027 -5.5310 -0.3721 49 1 12.0832 -3.3746 -2.4483 50 1 11.9498 -5.1492 -2.4679 51 1 10.8447 -4.1625 -3.4549 52 1 10.4196 -4.1843 1.3484 53 1 11.6817 -5.1630 0.5620 54 1 11.8151 -3.3884 0.5821 55 1 8.7801 -2.6236 0.9373 56 1 7.4924 -3.2581 -0.1194 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567694_60476.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:13:05 Heat of formation + Delta-G solvation = -149.819422 kcal Electronic energy + Delta-G solvation = -33661.119887 eV Core-core repulsion = 29273.784454 eV Total energy + Delta-G solvation = -4387.335432 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89928 -41.17342 -39.52865 -38.92654 -38.24910 -36.92437 -34.05357 -32.40693 -31.89532 -31.46399 -29.70548 -29.24250 -28.49752 -28.39122 -28.32487 -26.34466 -25.91709 -23.97766 -23.49122 -22.58864 -21.68488 -20.07676 -19.85702 -18.55940 -18.32950 -17.93759 -17.58142 -17.34922 -16.79917 -16.70970 -16.08293 -15.99530 -15.85701 -15.74024 -15.43785 -15.29568 -15.01096 -14.78255 -14.76260 -14.42009 -14.12770 -14.04683 -13.83720 -13.77842 -13.65218 -13.59156 -13.52862 -13.46872 -13.20086 -13.10914 -13.00512 -12.67587 -12.57269 -12.51103 -12.22188 -12.16898 -12.06402 -12.03348 -11.99608 -11.78803 -11.58257 -11.53061 -11.05957 -10.75479 -10.71062 -10.41750 -10.28585 -9.80356 -9.65244 -8.94134 0.14381 0.24074 1.20697 1.35364 1.42404 1.51323 1.56164 1.86942 1.95711 1.97306 2.02072 2.29681 2.44655 2.53496 2.71334 3.29231 3.49742 3.68322 3.75675 3.82544 3.95078 3.96030 3.97772 4.03662 4.08802 4.13168 4.17501 4.24300 4.32333 4.35475 4.46211 4.58530 4.59580 4.64457 4.67275 4.70043 4.75140 4.76807 4.83688 4.85840 4.86163 4.88338 4.89539 4.97620 5.01006 5.04177 5.07948 5.22417 5.28204 5.33498 5.43581 5.49727 5.56049 5.57353 5.65611 5.70392 5.94881 6.26462 6.49782 6.71366 7.01344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.147 4.147 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.987 3.013 9 H -0.246 1.246 10 H -0.279 1.279 11 H -0.251 1.251 12 C -0.123 4.123 13 C -0.161 4.161 14 C 0.082 3.918 15 O -0.314 6.314 16 C 0.038 3.962 17 C 0.507 3.493 18 O -0.577 6.577 19 N -0.601 5.601 20 C 0.094 3.906 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.396 4.396 24 Si 1.084 2.916 25 C -0.478 4.478 26 C -0.458 4.458 27 C -0.457 4.457 28 C 0.117 3.883 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.389 0.611 35 H 0.147 0.853 36 H 0.170 0.830 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.067 0.933 53 H 0.068 0.932 54 H 0.080 0.920 55 H 0.087 0.913 56 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 6.105 -0.076 9.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.034 3.966 4 C -0.166 4.166 5 C -0.117 4.117 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.811 3.189 9 H -0.169 1.169 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.140 4.140 13 C -0.179 4.179 14 C 0.037 3.963 15 O -0.228 6.228 16 C -0.040 4.040 17 C 0.295 3.705 18 O -0.456 6.456 19 N -0.335 5.335 20 C -0.028 4.028 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.459 4.459 24 Si 1.274 2.726 25 C -0.582 4.582 26 C -0.565 4.565 27 C -0.564 4.564 28 C -0.005 4.005 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.141 0.859 34 H 0.238 0.762 35 H 0.164 0.836 36 H 0.187 0.813 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.086 0.914 53 H 0.087 0.913 54 H 0.099 0.901 55 H 0.105 0.895 56 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.536 5.927 0.365 8.830 hybrid contribution -0.508 -0.775 -0.483 1.045 sum 6.027 5.152 -0.118 7.930 Atomic orbital electron populations 1.23307 0.76660 1.05217 1.02290 1.86196 1.23147 1.26583 1.89037 1.18674 0.89735 0.85793 1.02446 1.21030 1.00750 0.90192 1.04589 1.20230 0.94132 0.95331 1.02050 1.25105 1.00676 1.01259 0.92044 1.86479 1.36545 1.96886 1.16191 0.85152 0.76982 0.75113 0.81664 1.16934 1.20455 1.17483 1.21003 0.92911 0.98866 1.01262 1.21301 1.02002 0.89530 1.05101 1.18608 0.88388 0.86391 1.02952 1.86230 1.18064 1.29158 1.89301 1.22780 0.79441 0.95491 1.06249 1.20570 0.82883 0.90784 0.76289 1.90742 1.63680 1.40123 1.51048 1.48220 1.03950 1.09317 1.71983 1.22093 0.93830 0.86052 1.00784 1.21868 0.98364 0.99244 0.97789 1.21288 0.97132 0.92801 1.03640 1.26592 1.03799 1.15519 0.99965 0.78078 0.64773 0.63057 0.66660 1.26510 1.11842 1.16031 1.03832 1.26230 1.11481 1.04844 1.13940 1.26238 1.08770 1.04955 1.16480 1.21500 0.95399 0.84108 0.99450 0.87197 0.91580 0.91522 0.83429 0.85932 0.76188 0.83560 0.81276 0.86147 0.85914 0.87946 0.89017 0.88460 0.92432 0.90051 0.90222 0.90758 0.92136 0.91199 0.92101 0.90288 0.91300 0.91672 0.91370 0.91321 0.90123 0.89539 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.17 16 2 O -0.34 -4.02 10.28 -79.61 -0.82 -4.84 16 3 C 0.08 0.72 6.70 22.57 0.15 0.87 16 4 C -0.15 -0.59 8.59 22.35 0.19 -0.40 16 5 C -0.12 -0.08 5.39 -19.86 -0.11 -0.19 16 6 C -0.08 0.16 2.82 71.24 0.20 0.36 16 7 O -0.55 0.20 12.76 -148.98 -1.90 -1.70 16 8 Si 0.99 -3.42 25.06 68.60 1.72 -1.70 16 9 H -0.25 1.05 7.11 99.48 0.71 1.76 16 10 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 11 H -0.25 0.83 7.11 99.48 0.71 1.53 16 12 C -0.12 0.15 8.66 22.27 0.19 0.34 16 13 C -0.16 0.05 9.04 22.35 0.20 0.25 16 14 C 0.08 0.61 6.70 22.57 0.15 0.76 16 15 O -0.31 -3.52 9.46 -67.08 -0.63 -4.15 16 16 C 0.04 0.05 3.57 71.23 0.25 0.31 16 17 C 0.51 3.97 7.77 87.66 0.68 4.65 16 18 O -0.58 -11.24 15.91 15.99 0.25 -10.99 16 19 N -0.60 -0.45 2.98 -819.81 -2.44 -2.89 16 20 C 0.09 -0.73 6.31 86.22 0.54 -0.19 16 21 C -0.13 1.12 6.07 30.53 0.19 1.31 16 22 C -0.11 0.84 4.54 30.62 0.14 0.98 16 23 C -0.40 1.46 1.88 30.66 0.06 1.52 16 24 Si 1.08 -6.09 10.67 68.60 0.73 -5.36 16 25 C -0.48 -0.15 8.65 113.37 0.98 0.83 16 26 C -0.46 2.02 8.65 113.37 0.98 3.00 16 27 C -0.46 2.38 8.61 113.37 0.98 3.35 16 28 C 0.12 0.09 5.09 86.35 0.44 0.53 16 29 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 0.02 7.65 -2.39 -0.02 0.00 16 31 H 0.07 0.00 7.68 -2.38 -0.02 -0.01 16 32 H 0.15 0.27 6.30 -2.91 -0.02 0.25 16 33 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 34 H 0.39 -2.57 8.70 -74.06 -0.64 -3.22 16 35 H 0.15 -0.85 4.86 -2.91 -0.01 -0.86 16 36 H 0.17 -1.35 6.30 -2.91 -0.02 -1.37 16 37 H 0.12 -0.63 7.20 -2.39 -0.02 -0.65 16 38 H 0.12 -0.69 7.48 -2.39 -0.02 -0.70 16 39 H 0.10 -1.26 5.93 -2.39 -0.01 -1.27 16 40 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.08 -0.79 7.88 -2.39 -0.02 -0.81 16 44 H 0.08 -0.71 7.71 -2.39 -0.02 -0.72 16 45 H 0.07 -0.06 7.97 -2.39 -0.02 -0.08 16 46 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 47 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 48 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 49 H 0.08 -0.47 7.74 -2.39 -0.02 -0.49 16 50 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 51 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 52 H 0.07 -0.31 7.60 -2.39 -0.02 -0.32 16 53 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 54 H 0.08 -0.56 7.85 -2.39 -0.02 -0.58 16 55 H 0.09 -0.23 7.44 -2.39 -0.02 -0.25 16 56 H 0.07 0.45 6.95 -2.39 -0.02 0.43 16 Total: 0.00 -27.82 438.84 5.23 -22.59 By element: Atomic # 1 Polarization: -11.38 SS G_CDS: 0.98 Total: -10.39 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 7.33 Total: 19.44 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -2.44 Total: -2.89 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -3.10 Total: -21.68 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.45 Total: -7.06 kcal Total: -27.82 5.23 -22.59 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567694_60476.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.230 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds