Wall clock time and date at job start Sun Mar 7 2021 12:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86292 * 110.03327 * 2 1 4 4 C 1.87616 * 110.05164 * 121.43979 * 2 1 3 5 5 C 1.53957 * 106.73199 * 162.53015 * 4 2 1 6 6 N 1.46409 * 109.47870 * 301.29985 * 5 4 2 7 7 H 1.00901 * 108.93602 * 319.50378 * 6 5 4 8 8 C 1.46905 * 108.93113 * 200.82662 * 6 5 4 9 9 C 1.53002 * 109.46907 * 66.35665 * 8 6 5 10 10 N 1.46493 * 109.47340 * 174.60168 * 9 8 6 11 11 C 1.34771 * 120.00181 * 180.02562 * 10 9 8 12 12 O 1.21283 * 120.00343 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00215 * 179.97438 * 11 10 9 14 14 O 1.42896 * 109.47410 * 179.97438 * 13 11 10 15 15 C 1.35903 * 117.00258 * 179.97438 * 14 13 11 16 16 C 1.38731 * 120.05469 * 359.73283 * 15 14 13 17 17 C 1.38147 * 119.94837 * 179.74288 * 16 15 14 18 18 C 1.38272 * 120.04742 * 0.50417 * 17 16 15 19 19 C 1.50702 * 119.93901 * 179.74243 * 18 17 16 20 20 O 1.42899 * 109.47526 * 245.02230 * 19 18 17 21 21 Si 1.86303 * 109.47291 * 5.02591 * 19 18 17 22 22 H 1.48501 * 109.47160 * 59.99625 * 21 19 18 23 23 H 1.48497 * 109.46938 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47032 * 299.99734 * 21 19 18 25 25 C 1.38258 * 120.11327 * 359.77185 * 18 17 16 26 26 C 1.38146 * 120.05986 * 359.97393 * 25 18 17 27 27 C 1.46406 * 112.15587 * 80.17103 * 6 5 4 28 28 C 1.54034 * 109.43614 * 279.75489 * 27 6 5 29 29 H 1.09006 * 109.46665 * 298.56047 * 1 2 3 30 30 H 1.08993 * 109.47424 * 58.55431 * 1 2 3 31 31 H 1.08998 * 109.47421 * 178.56325 * 1 2 3 32 32 H 1.09002 * 109.47051 * 181.44856 * 3 2 1 33 33 H 1.09001 * 109.47113 * 301.43822 * 3 2 1 34 34 H 1.09000 * 109.47345 * 61.44256 * 3 2 1 35 35 H 1.09005 * 109.99844 * 43.23069 * 4 2 1 36 36 H 1.08997 * 110.00523 * 281.83749 * 4 2 1 37 37 H 1.09006 * 109.47131 * 181.29742 * 5 4 2 38 38 H 1.08996 * 109.47212 * 61.30118 * 5 4 2 39 39 H 1.08997 * 109.47147 * 306.35995 * 8 6 5 40 40 H 1.08999 * 109.47028 * 186.35123 * 8 6 5 41 41 H 1.09002 * 109.46835 * 294.59941 * 9 8 6 42 42 H 1.08997 * 109.47461 * 54.59697 * 9 8 6 43 43 H 0.97004 * 119.99608 * 359.97438 * 10 9 8 44 44 H 1.08994 * 109.47199 * 299.99946 * 13 11 10 45 45 H 1.09005 * 109.46979 * 59.99678 * 13 11 10 46 46 H 1.08005 * 120.03012 * 359.97438 * 16 15 14 47 47 H 1.07991 * 119.97911 * 180.22486 * 17 16 15 48 48 H 1.09003 * 109.46828 * 125.01993 * 19 18 17 49 49 H 0.96703 * 113.99671 * 59.99675 * 20 19 18 50 50 H 1.08008 * 119.97070 * 179.97438 * 25 18 17 51 51 H 1.07998 * 120.03127 * 179.97438 * 26 25 18 52 52 H 1.08999 * 109.47167 * 39.83042 * 27 6 5 53 53 H 1.09001 * 109.47316 * 159.82892 * 27 6 5 54 54 H 1.09002 * 110.06652 * 299.50722 * 28 27 6 55 55 H 1.09001 * 110.06495 * 178.13161 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5012 1.7502 0.0000 4 6 2.5063 -0.9193 1.5037 5 6 3.9794 -1.2626 1.2166 6 7 4.0635 -2.0758 0.0021 7 1 3.3069 -2.7434 0.0020 8 6 5.3399 -2.8029 0.0027 9 6 5.3464 -3.8209 1.1450 10 7 6.5627 -4.6336 1.0679 11 6 6.7846 -5.6025 1.9781 12 8 5.9774 -5.8013 2.8612 13 6 8.0356 -6.4390 1.8985 14 8 8.0416 -7.3897 2.9653 15 6 9.1084 -8.2286 3.0382 16 6 10.1256 -8.1423 2.0988 17 6 11.2115 -8.9926 2.1781 18 6 11.2799 -9.9361 3.1866 19 6 12.4628 -10.8663 3.2673 20 8 12.0291 -12.2092 3.0423 21 14 13.7149 -10.3927 1.9716 22 1 14.1656 -8.9972 2.2054 23 1 14.8807 -11.3090 2.0516 24 1 13.0965 -10.4941 0.6253 25 6 10.2646 -10.0279 4.1206 26 6 9.1792 -9.1764 4.0488 27 6 3.9803 -1.2635 -1.2131 28 6 2.5062 -0.9223 -1.5018 29 1 -0.3633 0.4914 0.9027 30 1 -0.3634 0.5361 -0.8767 31 1 -0.3634 -1.0273 -0.0258 32 1 3.5909 1.7396 -0.0260 33 1 2.1221 2.2752 -0.8768 34 1 2.1641 2.2599 0.9026 35 1 1.9330 -1.8340 1.6548 36 1 2.4368 -0.2843 2.3869 37 1 4.3928 -1.8206 2.0568 38 1 4.5465 -0.3422 1.0776 39 1 6.1597 -2.0978 0.1399 40 1 5.4626 -3.3224 -0.9476 41 1 5.3202 -3.2957 2.0998 42 1 4.4721 -4.4664 1.0613 43 1 7.2081 -4.4749 0.3614 44 1 8.0616 -6.9639 0.9436 45 1 8.9101 -5.7937 1.9823 46 1 10.0705 -7.4084 1.3083 47 1 12.0054 -8.9234 1.4493 48 1 12.9168 -10.7918 4.2555 49 1 11.6143 -12.3492 2.1801 50 1 10.3202 -10.7660 4.9072 51 1 8.3862 -9.2488 4.7783 52 1 4.5473 -0.3429 -1.0743 53 1 4.3943 -1.8220 -2.0526 54 1 1.9330 -1.8373 -1.6512 55 1 2.4351 -0.2897 -2.3865 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567708_2989410.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:19:31 Heat of formation + Delta-G solvation = -8.537821 kcal Electronic energy + Delta-G solvation = -30171.102423 eV Core-core repulsion = 26029.493963 eV Total energy + Delta-G solvation = -4141.608460 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.57470 -41.54469 -40.57111 -39.02499 -37.15277 -36.31125 -32.97970 -32.71429 -32.32707 -31.75329 -30.32875 -29.14627 -28.44817 -28.17429 -26.21076 -24.94534 -24.23414 -23.95629 -23.47556 -22.42085 -21.80239 -19.56736 -18.82150 -18.48683 -18.29114 -17.80714 -17.52049 -17.16752 -16.92564 -16.85247 -16.39833 -16.26025 -15.96495 -15.61684 -15.39159 -15.12236 -14.91482 -14.78063 -14.61739 -14.45856 -14.12807 -13.86572 -13.79267 -13.74084 -13.59796 -13.54624 -13.45583 -13.42086 -13.30499 -13.16760 -13.00301 -12.78179 -12.64110 -12.56933 -12.27557 -12.17542 -12.09440 -12.04412 -11.58172 -11.14780 -10.90652 -10.78218 -10.53193 -10.38274 -10.31139 -10.05869 -9.25038 0.25112 0.28777 0.73421 1.19450 1.37457 1.44860 1.46872 1.51457 1.54751 1.69412 1.77175 1.94894 2.47803 2.51736 2.63714 2.79692 2.91333 3.08512 3.48507 3.53792 3.58038 3.62477 3.71400 3.79114 3.83169 3.93116 4.03397 4.05152 4.08897 4.14560 4.19478 4.27691 4.40188 4.40840 4.44438 4.56602 4.58703 4.64317 4.68091 4.70121 4.70820 4.74824 4.76260 4.78485 4.85635 4.93421 4.94534 5.12872 5.15295 5.21303 5.28540 5.37173 5.50144 5.55947 5.64921 5.66862 6.19674 6.37843 6.72536 7.04380 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.001311 C = 0.001279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.380435 B =21358.848217 C =21887.513715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.505 4.505 2 Si 1.093 2.907 3 C -0.489 4.489 4 C -0.442 4.442 5 C -0.007 4.007 6 N -0.374 5.374 7 H 0.434 0.566 8 C -0.008 4.008 9 C 0.080 3.920 10 N -0.705 5.705 11 C 0.519 3.481 12 O -0.567 6.567 13 C 0.025 3.975 14 O -0.320 6.320 15 C 0.125 3.875 16 C -0.196 4.196 17 C -0.091 4.091 18 C -0.161 4.161 19 C -0.082 4.082 20 O -0.557 6.557 21 Si 0.983 3.017 22 H -0.251 1.251 23 H -0.287 1.287 24 H -0.242 1.242 25 C -0.060 4.060 26 C -0.166 4.166 27 C 0.005 3.995 28 C -0.433 4.433 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.430 0.570 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.170 0.830 47 H 0.140 0.860 48 H 0.116 0.884 49 H 0.388 0.612 50 H 0.133 0.867 51 H 0.128 0.872 52 H 0.147 0.853 53 H 0.159 0.841 54 H 0.113 0.887 55 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 19.552 -14.856 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.607 4.607 2 Si 1.282 2.718 3 C -0.594 4.594 4 C -0.527 4.527 5 C -0.128 4.128 6 N 0.046 4.954 7 H 0.272 0.728 8 C -0.130 4.130 9 C -0.044 4.044 10 N -0.362 5.362 11 C 0.305 3.695 12 O -0.444 6.444 13 C -0.053 4.053 14 O -0.233 6.233 15 C 0.080 3.920 16 C -0.214 4.214 17 C -0.109 4.109 18 C -0.162 4.162 19 C -0.192 4.192 20 O -0.364 6.364 21 Si 0.808 3.192 22 H -0.175 1.175 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.078 4.078 26 C -0.184 4.184 27 C -0.115 4.115 28 C -0.520 4.520 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.269 0.731 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.187 0.813 47 H 0.157 0.843 48 H 0.134 0.866 49 H 0.237 0.763 50 H 0.151 0.849 51 H 0.146 0.854 52 H 0.165 0.835 53 H 0.177 0.823 54 H 0.132 0.868 55 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.519 19.846 -14.139 26.161 hybrid contribution -1.192 0.013 0.112 1.197 sum -10.711 19.858 -14.028 26.568 Atomic orbital electron populations 1.26822 1.26075 1.04348 1.03453 0.78240 0.62931 0.65170 0.65505 1.26636 1.07769 1.21166 1.03795 1.26837 0.97992 1.11029 1.16891 1.23760 1.01016 1.00690 0.87363 1.45298 1.17379 1.17627 1.15050 0.72766 1.23992 0.86926 0.98167 1.03911 1.21902 0.88956 0.93625 0.99910 1.45177 1.24710 1.34614 1.31676 1.20284 0.86935 0.80797 0.81472 1.90833 1.48041 1.69174 1.36378 1.22873 0.98187 0.92079 0.92146 1.86118 1.41076 1.45795 1.50319 1.19066 0.86982 0.90735 0.95265 1.21458 0.94574 1.03983 1.01430 1.21112 0.98212 0.94402 0.97156 1.20349 0.98297 0.99738 0.97772 1.25036 0.99843 0.83624 1.10690 1.86509 1.81664 1.26155 1.42107 0.85222 0.76818 0.79456 0.77741 1.17516 1.21317 1.16560 1.20939 0.91961 0.96929 0.98003 1.20645 1.00594 0.97243 0.99946 1.23745 1.00581 1.00736 0.86468 1.26710 0.98250 1.11088 1.15970 0.92950 0.92602 0.90960 0.89158 0.92425 0.92748 0.87375 0.87175 0.84631 0.83061 0.81920 0.81461 0.89566 0.89612 0.73098 0.85588 0.85644 0.81280 0.84253 0.86590 0.76268 0.84919 0.85408 0.83508 0.82315 0.86838 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 17.07 8.65 113.37 0.98 18.05 16 2 Si 1.09 -52.61 11.69 68.60 0.80 -51.81 16 3 C -0.49 19.23 8.65 113.37 0.98 20.21 16 4 C -0.44 23.02 4.98 72.31 0.36 23.38 16 5 C -0.01 0.42 4.92 86.72 0.43 0.85 16 6 N -0.37 24.41 0.33 -894.75 -0.30 24.11 16 7 H 0.43 -29.34 7.44 -89.69 -0.67 -30.01 16 8 C -0.01 0.51 4.70 86.30 0.41 0.92 16 9 C 0.08 -4.17 5.39 86.38 0.47 -3.70 16 10 N -0.70 31.83 5.56 -463.07 -2.57 29.26 16 11 C 0.52 -15.63 7.91 87.66 0.69 -14.94 16 12 O -0.57 9.65 16.50 16.00 0.26 9.92 16 13 C 0.02 -0.74 5.22 71.24 0.37 -0.37 16 14 O -0.32 5.33 9.67 -73.42 -0.71 4.62 16 15 C 0.12 -1.96 6.69 22.51 0.15 -1.81 16 16 C -0.20 4.07 9.04 22.37 0.20 4.27 16 17 C -0.09 1.62 8.66 22.26 0.19 1.81 16 18 C -0.16 2.27 5.35 -19.85 -0.11 2.17 16 19 C -0.08 1.14 2.80 71.24 0.20 1.34 16 20 O -0.56 6.35 12.83 -148.98 -1.91 4.44 16 21 Si 0.98 -14.90 25.14 68.60 1.72 -13.17 16 22 H -0.25 3.84 7.11 99.48 0.71 4.54 16 23 H -0.29 2.65 7.11 99.48 0.71 3.36 16 24 H -0.24 4.14 7.04 99.48 0.70 4.84 16 25 C -0.06 0.73 9.68 22.25 0.22 0.95 16 26 C -0.17 2.00 9.99 22.37 0.22 2.22 16 27 C 0.00 -0.31 5.10 86.75 0.44 0.13 16 28 C -0.43 23.90 4.98 72.33 0.36 24.26 16 29 H 0.05 -1.50 7.96 -2.38 -0.02 -1.52 16 30 H 0.05 -1.64 7.96 -2.39 -0.02 -1.66 16 31 H 0.07 -2.45 7.96 -2.39 -0.02 -2.47 16 32 H 0.09 -3.96 7.96 -2.39 -0.02 -3.98 16 33 H 0.06 -1.96 7.96 -2.39 -0.02 -1.98 16 34 H 0.05 -1.81 7.96 -2.39 -0.02 -1.83 16 35 H 0.11 -5.66 7.98 -2.38 -0.02 -5.68 16 36 H 0.11 -5.23 7.99 -2.39 -0.02 -5.25 16 37 H 0.14 -8.03 5.72 -2.38 -0.01 -8.04 16 38 H 0.15 -9.55 7.42 -2.39 -0.02 -9.57 16 39 H 0.16 -11.14 8.08 -2.39 -0.02 -11.16 16 40 H 0.17 -11.63 7.72 -2.39 -0.02 -11.65 16 41 H 0.09 -4.29 6.32 -2.39 -0.02 -4.30 16 42 H 0.09 -4.30 8.08 -2.39 -0.02 -4.32 16 43 H 0.43 -22.83 8.47 -92.71 -0.79 -23.62 16 44 H 0.13 -4.55 7.65 -2.39 -0.02 -4.57 16 45 H 0.13 -4.51 7.68 -2.38 -0.02 -4.53 16 46 H 0.17 -5.07 6.30 -2.91 -0.02 -5.09 16 47 H 0.14 -2.96 4.86 -2.92 -0.01 -2.97 16 48 H 0.12 -1.66 7.96 -2.39 -0.02 -1.68 16 49 H 0.39 -7.10 8.70 -74.06 -0.64 -7.75 16 50 H 0.13 -1.65 8.06 -2.91 -0.02 -1.67 16 51 H 0.13 -1.50 8.06 -2.91 -0.02 -1.52 16 52 H 0.15 -9.68 7.42 -2.39 -0.02 -9.69 16 53 H 0.16 -10.71 7.58 -2.39 -0.02 -10.73 16 54 H 0.11 -6.37 7.98 -2.39 -0.02 -6.38 16 55 H 0.12 -6.10 7.99 -2.39 -0.02 -6.12 16 Total: 1.00 -93.29 428.94 3.42 -89.87 By element: Atomic # 1 Polarization: -176.53 SS G_CDS: -0.45 Total: -176.98 kcal Atomic # 6 Polarization: 73.18 SS G_CDS: 6.57 Total: 79.74 kcal Atomic # 7 Polarization: 56.24 SS G_CDS: -2.87 Total: 53.37 kcal Atomic # 8 Polarization: 21.34 SS G_CDS: -2.36 Total: 18.98 kcal Atomic # 14 Polarization: -67.51 SS G_CDS: 2.53 Total: -64.98 kcal Total: -93.29 3.42 -89.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567708_2989410.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.334 kcal (2) G-P(sol) polarization free energy of solvation -93.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds