Wall clock time and date at job start Sun Mar 7 2021 12:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86299 * 110.03379 * 2 1 4 4 C 1.87623 * 110.05358 * 121.43889 * 2 1 3 5 5 C 1.53956 * 106.73383 * 162.52984 * 4 2 1 6 6 N 1.46404 * 109.48355 * 301.30619 * 5 4 2 7 7 H 1.00899 * 108.92789 * 319.50678 * 6 5 4 8 8 C 1.46898 * 108.93334 * 200.83037 * 6 5 4 9 9 C 1.52995 * 109.47196 * 66.34896 * 8 6 5 10 10 N 1.46501 * 109.47128 * 174.60741 * 9 8 6 11 11 C 1.34775 * 120.00087 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00024 * 179.97438 * 11 10 9 14 14 O 1.42897 * 109.46773 * 179.97438 * 13 11 10 15 15 C 1.35907 * 116.99798 * 180.02562 * 14 13 11 16 16 C 1.38712 * 120.05314 * 359.72679 * 15 14 13 17 17 C 1.38170 * 119.94297 * 179.72718 * 16 15 14 18 18 C 1.38247 * 120.05228 * 0.56566 * 17 16 15 19 19 C 1.38281 * 120.11341 * 359.68159 * 18 17 16 20 20 C 1.50700 * 119.97361 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47232 * 245.02273 * 20 19 18 22 22 Si 1.86295 * 109.47097 * 5.02477 * 20 19 18 23 23 H 1.48506 * 109.47076 * 59.99874 * 22 20 19 24 24 H 1.48494 * 109.47233 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47129 * 300.00024 * 22 20 19 26 26 C 1.38127 * 120.05685 * 0.04943 * 19 18 17 27 27 C 1.46412 * 112.15622 * 80.16406 * 6 5 4 28 28 C 1.54027 * 109.44056 * 279.75506 * 27 6 5 29 29 H 1.08998 * 109.47274 * 298.55695 * 1 2 3 30 30 H 1.08998 * 109.47141 * 58.55944 * 1 2 3 31 31 H 1.09001 * 109.47506 * 178.55932 * 1 2 3 32 32 H 1.09003 * 109.47373 * 181.44147 * 3 2 1 33 33 H 1.09001 * 109.47351 * 301.44117 * 3 2 1 34 34 H 1.09005 * 109.47236 * 61.43948 * 3 2 1 35 35 H 1.08998 * 109.99507 * 43.23111 * 4 2 1 36 36 H 1.08996 * 110.00259 * 281.83995 * 4 2 1 37 37 H 1.08994 * 109.47066 * 181.29805 * 5 4 2 38 38 H 1.09010 * 109.46657 * 61.30373 * 5 4 2 39 39 H 1.09006 * 109.46869 * 306.34522 * 8 6 5 40 40 H 1.08998 * 109.47121 * 186.35222 * 8 6 5 41 41 H 1.08993 * 109.47536 * 54.60448 * 9 8 6 42 42 H 1.09008 * 109.47039 * 294.59996 * 9 8 6 43 43 H 0.97005 * 119.99731 * 359.97438 * 10 9 8 44 44 H 1.08998 * 109.46787 * 299.99287 * 13 11 10 45 45 H 1.08996 * 109.46739 * 59.99740 * 13 11 10 46 46 H 1.08004 * 120.03115 * 359.97438 * 16 15 14 47 47 H 1.07997 * 119.97325 * 180.27088 * 17 16 15 48 48 H 1.08001 * 119.93977 * 179.70703 * 18 17 16 49 49 H 1.09005 * 109.46767 * 125.02523 * 20 19 18 50 50 H 0.96703 * 113.99960 * 60.00397 * 21 20 19 51 51 H 1.08001 * 120.03098 * 180.02562 * 26 19 18 52 52 H 1.08995 * 109.46955 * 39.83379 * 27 6 5 53 53 H 1.08997 * 109.47035 * 159.83585 * 27 6 5 54 54 H 1.08998 * 110.07093 * 299.51609 * 28 27 6 55 55 H 1.09001 * 110.06824 * 178.12744 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5012 1.7503 0.0000 4 6 2.5063 -0.9193 1.5037 5 6 3.9794 -1.2626 1.2167 6 7 4.0636 -2.0757 0.0021 7 1 3.3070 -2.7432 0.0020 8 6 5.3400 -2.8028 0.0028 9 6 5.3464 -3.8207 1.1450 10 7 6.5629 -4.6334 1.0680 11 6 6.7847 -5.6024 1.9782 12 8 5.9775 -5.8012 2.8613 13 6 8.0359 -6.4388 1.8986 14 8 8.0419 -7.3894 2.9655 15 6 9.1092 -8.2275 3.0390 16 6 10.1267 -8.1405 2.1004 17 6 11.2135 -8.9900 2.1806 18 6 11.2816 -9.9338 3.1885 19 6 10.2660 -10.0260 4.1224 20 6 10.3437 -11.0556 5.2201 21 8 9.2868 -12.0039 5.0593 22 14 11.9845 -11.9336 5.1329 23 1 13.0827 -10.9480 5.3000 24 1 12.0613 -12.9477 6.2149 25 1 12.1176 -12.6043 3.8147 26 6 9.1801 -9.1754 4.0498 27 6 3.9804 -1.2633 -1.2131 28 6 2.5063 -0.9223 -1.5018 29 1 -0.3634 0.4912 0.9026 30 1 -0.3633 0.5360 -0.8768 31 1 -0.3634 -1.0273 -0.0258 32 1 3.5908 1.7397 -0.0259 33 1 2.1220 2.2753 -0.8768 34 1 2.1640 2.2600 0.9026 35 1 1.9331 -1.8340 1.6549 36 1 2.4367 -0.2843 2.3869 37 1 4.3928 -1.8205 2.0568 38 1 4.5465 -0.3421 1.0777 39 1 6.1598 -2.0976 0.1399 40 1 5.4627 -3.3222 -0.9475 41 1 4.4722 -4.4663 1.0613 42 1 5.3202 -3.2956 2.0999 43 1 7.2083 -4.4746 0.3615 44 1 8.0618 -6.9636 0.9437 45 1 8.9102 -5.7934 1.9825 46 1 10.0715 -7.4068 1.3098 47 1 12.0081 -8.9198 1.4526 48 1 12.1296 -10.6001 3.2467 49 1 10.2460 -10.5632 6.1876 50 1 9.3109 -12.4810 4.2185 51 1 8.3873 -9.2475 4.7797 52 1 4.5473 -0.3427 -1.0742 53 1 4.3943 -1.8218 -2.0526 54 1 1.9331 -1.8372 -1.6512 55 1 2.4352 -0.2895 -2.3865 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567708_4860298.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:25:27 Heat of formation + Delta-G solvation = -8.536204 kcal Electronic energy + Delta-G solvation = -30237.354402 eV Core-core repulsion = 26095.746012 eV Total energy + Delta-G solvation = -4141.608390 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.57442 -41.54254 -40.57642 -38.99680 -37.26371 -36.31387 -32.96241 -32.69675 -32.48082 -31.66910 -30.11095 -29.10377 -28.44315 -28.08395 -26.78845 -24.93740 -23.99247 -23.74638 -23.69718 -22.58414 -21.67396 -19.35926 -18.82811 -18.56810 -17.92208 -17.88847 -17.52778 -17.28178 -17.08134 -16.91429 -16.45491 -16.36542 -16.14503 -15.60583 -15.37358 -14.97707 -14.97267 -14.78222 -14.61650 -14.42862 -14.12624 -14.04979 -13.85186 -13.74002 -13.54936 -13.48271 -13.42110 -13.30384 -13.16750 -13.02741 -12.99451 -12.78132 -12.64130 -12.61067 -12.56791 -12.21650 -12.08167 -11.99945 -11.57455 -11.14716 -10.90595 -10.78090 -10.53085 -10.49614 -10.31263 -9.94744 -9.30760 0.18718 0.35943 0.73418 1.13349 1.37403 1.43449 1.47268 1.50311 1.55430 1.69456 1.77327 1.90707 2.48254 2.51817 2.64735 2.79776 2.91329 3.08504 3.48376 3.50610 3.57364 3.62636 3.66847 3.78785 3.83778 4.02574 4.03751 4.08567 4.09090 4.14747 4.19443 4.20433 4.35302 4.40146 4.44355 4.54004 4.58960 4.64292 4.65153 4.68154 4.70803 4.74717 4.76406 4.78642 4.85622 4.93639 4.96494 5.14831 5.20059 5.28579 5.33469 5.37334 5.43206 5.55977 5.64865 5.65076 6.20858 6.39058 6.65602 7.04537 Molecular weight = 367.20amu Principal moments of inertia in cm(-1) A = 0.030566 B = 0.001314 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.830699 B =21300.080565 C =21769.691345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.505 4.505 2 Si 1.093 2.907 3 C -0.489 4.489 4 C -0.442 4.442 5 C -0.007 4.007 6 N -0.374 5.374 7 H 0.434 0.566 8 C -0.007 4.007 9 C 0.080 3.920 10 N -0.704 5.704 11 C 0.519 3.481 12 O -0.567 6.567 13 C 0.026 3.974 14 O -0.322 6.322 15 C 0.119 3.881 16 C -0.197 4.197 17 C -0.074 4.074 18 C -0.174 4.174 19 C -0.085 4.085 20 C -0.085 4.085 21 O -0.554 6.554 22 Si 0.988 3.012 23 H -0.254 1.254 24 H -0.283 1.283 25 H -0.247 1.247 26 C -0.144 4.144 27 C 0.005 3.995 28 C -0.433 4.433 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.430 0.570 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.169 0.831 47 H 0.157 0.843 48 H 0.130 0.870 49 H 0.120 0.880 50 H 0.389 0.611 51 H 0.119 0.881 52 H 0.147 0.853 53 H 0.159 0.841 54 H 0.113 0.887 55 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.289 19.576 -17.733 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.607 4.607 2 Si 1.281 2.719 3 C -0.593 4.593 4 C -0.528 4.528 5 C -0.128 4.128 6 N 0.046 4.954 7 H 0.272 0.728 8 C -0.130 4.130 9 C -0.044 4.044 10 N -0.361 5.361 11 C 0.305 3.695 12 O -0.445 6.445 13 C -0.051 4.051 14 O -0.235 6.235 15 C 0.074 3.926 16 C -0.215 4.215 17 C -0.092 4.092 18 C -0.192 4.192 19 C -0.085 4.085 20 C -0.196 4.196 21 O -0.361 6.361 22 Si 0.812 3.188 23 H -0.178 1.178 24 H -0.209 1.209 25 H -0.170 1.170 26 C -0.163 4.163 27 C -0.115 4.115 28 C -0.520 4.520 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.269 0.731 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.186 0.814 47 H 0.174 0.826 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.238 0.762 51 H 0.137 0.863 52 H 0.165 0.835 53 H 0.177 0.823 54 H 0.132 0.868 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.260 19.507 -16.440 26.268 hybrid contribution -1.022 0.158 -0.195 1.053 sum -7.282 19.665 -16.635 26.767 Atomic orbital electron populations 1.26822 1.26077 1.04345 1.03456 0.78242 0.62931 0.65185 0.65493 1.26634 1.07773 1.21136 1.03799 1.26841 0.97998 1.11023 1.16918 1.23757 1.01014 1.00690 0.87362 1.45298 1.17374 1.17630 1.15061 0.72780 1.23987 0.86933 0.98154 1.03887 1.21902 0.88950 0.93632 0.99924 1.45175 1.24703 1.34604 1.31667 1.20304 0.86956 0.80808 0.81472 1.90836 1.48054 1.69175 1.36413 1.22860 0.98143 0.92035 0.92099 1.86117 1.41126 1.45898 1.50402 1.19063 0.87247 0.90830 0.95438 1.21609 0.94749 1.04112 1.01073 1.21294 0.97865 0.92956 0.97111 1.21239 0.99304 1.01772 0.96907 1.20154 0.94369 0.96981 0.97031 1.25111 1.02520 0.91937 0.99986 1.86508 1.50835 1.54929 1.43847 0.85132 0.74516 0.78933 0.80213 1.17846 1.20861 1.17032 1.20305 0.99805 0.96467 0.99723 1.23744 1.00576 1.00733 0.86453 1.26708 0.98259 1.11091 1.15969 0.92955 0.92585 0.90972 0.89147 0.92409 0.92755 0.87408 0.87187 0.84673 0.83040 0.81901 0.81450 0.89648 0.89591 0.73081 0.85618 0.85641 0.81363 0.82580 0.85279 0.86265 0.76164 0.86326 0.83495 0.82295 0.86838 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 16.98 8.65 113.37 0.98 17.96 16 2 Si 1.09 -52.42 11.69 68.60 0.80 -51.62 16 3 C -0.49 19.17 8.65 113.37 0.98 20.15 16 4 C -0.44 22.92 4.98 72.30 0.36 23.28 16 5 C -0.01 0.42 4.92 86.72 0.43 0.85 16 6 N -0.37 24.33 0.33 -894.79 -0.30 24.03 16 7 H 0.43 -29.21 7.44 -89.70 -0.67 -29.88 16 8 C -0.01 0.48 4.70 86.30 0.41 0.89 16 9 C 0.08 -4.12 5.39 86.38 0.47 -3.66 16 10 N -0.70 31.53 5.56 -463.06 -2.57 28.95 16 11 C 0.52 -15.30 7.91 87.66 0.69 -14.61 16 12 O -0.57 9.21 16.50 15.99 0.26 9.48 16 13 C 0.03 -0.77 5.22 71.24 0.37 -0.40 16 14 O -0.32 5.05 9.67 -73.46 -0.71 4.34 16 15 C 0.12 -1.78 6.69 22.51 0.15 -1.63 16 16 C -0.20 4.14 9.04 22.37 0.20 4.34 16 17 C -0.07 1.41 10.04 22.26 0.22 1.64 16 18 C -0.17 2.57 8.67 22.28 0.19 2.77 16 19 C -0.08 1.03 5.35 -19.88 -0.11 0.92 16 20 C -0.09 1.02 2.80 71.24 0.20 1.22 16 21 O -0.55 5.45 12.83 -148.98 -1.91 3.53 16 22 Si 0.99 -12.26 25.14 68.60 1.72 -10.53 16 23 H -0.25 3.00 7.11 99.48 0.71 3.71 16 24 H -0.28 2.10 7.11 99.48 0.71 2.81 16 25 H -0.25 3.29 7.04 99.48 0.70 3.99 16 26 C -0.14 1.52 9.62 22.37 0.22 1.73 16 27 C 0.01 -0.33 5.10 86.74 0.44 0.12 16 28 C -0.43 23.84 4.98 72.33 0.36 24.20 16 29 H 0.05 -1.49 7.96 -2.39 -0.02 -1.50 16 30 H 0.05 -1.64 7.96 -2.39 -0.02 -1.65 16 31 H 0.07 -2.43 7.96 -2.39 -0.02 -2.45 16 32 H 0.09 -3.96 7.96 -2.39 -0.02 -3.98 16 33 H 0.06 -1.96 7.96 -2.39 -0.02 -1.98 16 34 H 0.05 -1.80 7.96 -2.38 -0.02 -1.82 16 35 H 0.11 -5.61 7.98 -2.39 -0.02 -5.63 16 36 H 0.11 -5.20 7.99 -2.39 -0.02 -5.22 16 37 H 0.14 -7.96 5.72 -2.39 -0.01 -7.97 16 38 H 0.15 -9.54 7.42 -2.38 -0.02 -9.55 16 39 H 0.16 -11.12 8.08 -2.38 -0.02 -11.14 16 40 H 0.17 -11.60 7.72 -2.39 -0.02 -11.62 16 41 H 0.09 -4.24 8.08 -2.39 -0.02 -4.26 16 42 H 0.09 -4.24 6.32 -2.38 -0.02 -4.25 16 43 H 0.43 -22.71 8.47 -92.70 -0.79 -23.49 16 44 H 0.13 -4.48 7.65 -2.39 -0.02 -4.49 16 45 H 0.13 -4.46 7.67 -2.39 -0.02 -4.48 16 46 H 0.17 -5.08 6.30 -2.91 -0.02 -5.10 16 47 H 0.16 -3.79 8.06 -2.91 -0.02 -3.81 16 48 H 0.13 -2.12 4.86 -2.91 -0.01 -2.13 16 49 H 0.12 -1.50 7.96 -2.38 -0.02 -1.52 16 50 H 0.39 -6.50 8.70 -74.06 -0.64 -7.14 16 51 H 0.12 -0.94 8.06 -2.91 -0.02 -0.96 16 52 H 0.15 -9.67 7.42 -2.39 -0.02 -9.69 16 53 H 0.16 -10.71 7.58 -2.39 -0.02 -10.72 16 54 H 0.11 -6.35 7.98 -2.39 -0.02 -6.37 16 55 H 0.12 -6.11 7.99 -2.39 -0.02 -6.13 16 Total: 1.00 -93.91 428.94 3.42 -90.49 By element: Atomic # 1 Polarization: -177.98 SS G_CDS: -0.45 Total: -178.43 kcal Atomic # 6 Polarization: 73.20 SS G_CDS: 6.57 Total: 79.76 kcal Atomic # 7 Polarization: 55.85 SS G_CDS: -2.87 Total: 52.98 kcal Atomic # 8 Polarization: 19.71 SS G_CDS: -2.36 Total: 17.35 kcal Atomic # 14 Polarization: -64.68 SS G_CDS: 2.53 Total: -62.15 kcal Total: -93.91 3.42 -90.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567708_4860298.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.954 kcal (2) G-P(sol) polarization free energy of solvation -93.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds