Wall clock time and date at job start Sun Mar 7 2021 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47419 * 2 1 4 4 C 1.50703 * 109.47483 * 239.99907 * 2 1 3 5 5 C 1.38262 * 119.94363 * 300.00829 * 4 2 1 6 6 C 1.38145 * 120.05942 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94244 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05873 * 180.02562 * 7 6 5 9 9 C 1.42905 * 117.00039 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.84790 * 334.66860 * 13 12 10 15 15 C 1.53785 * 113.61395 * 105.85632 * 13 12 10 16 16 C 1.54056 * 86.98219 * 89.16453 * 15 13 12 17 17 H 1.09000 * 113.68862 * 270.87496 * 16 15 13 18 18 C 1.52999 * 113.61931 * 139.97788 * 16 15 13 19 19 N 1.46496 * 109.47182 * 87.50788 * 18 16 15 20 20 C 1.35311 * 125.87245 * 124.71084 * 19 18 16 21 21 C 1.35353 * 106.17846 * 179.90056 * 20 19 18 22 22 N 1.33777 * 106.49383 * 0.36201 * 21 20 19 23 23 N 1.28632 * 108.88504 * 359.76225 * 22 21 20 24 24 C 1.53772 * 113.61622 * 203.46775 * 13 12 10 25 25 C 1.38738 * 119.88718 * 0.27269 * 7 6 5 26 26 C 1.38148 * 119.94048 * 359.47662 * 25 7 6 27 27 H 0.96701 * 113.99302 * 60.00025 * 1 2 3 28 28 H 1.09003 * 109.46779 * 120.00343 * 2 1 3 29 29 H 1.48500 * 109.99961 * 298.67940 * 3 2 1 30 30 H 1.48506 * 109.99773 * 59.99912 * 3 2 1 31 31 H 1.08009 * 119.97583 * 359.96692 * 5 4 2 32 32 H 1.07999 * 120.03439 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 34 34 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 35 35 H 0.96996 * 119.99844 * 359.97438 * 12 10 9 36 36 H 1.08998 * 113.61672 * 203.66296 * 15 13 12 37 37 H 1.09001 * 113.61836 * 334.57634 * 15 13 12 38 38 H 1.09001 * 109.47216 * 207.50447 * 18 16 15 39 39 H 1.09001 * 109.47355 * 327.50521 * 18 16 15 40 40 H 1.07997 * 126.91231 * 0.02562 * 20 19 18 41 41 H 1.07991 * 126.75311 * 180.12221 * 21 20 19 42 42 H 1.09006 * 113.61353 * 25.43058 * 24 13 12 43 43 H 1.08999 * 113.61864 * 156.33229 * 24 13 12 44 44 H 1.07995 * 120.02746 * 179.71906 * 25 7 6 45 45 H 1.08004 * 119.97067 * 180.22662 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5966 -2.0341 -1.4482 6 6 2.0554 -2.6875 -2.5755 7 6 2.8524 -2.0142 -3.4900 8 8 3.3046 -2.6545 -4.6000 9 6 4.1199 -1.8988 -5.4980 10 6 4.5236 -2.7672 -6.6616 11 8 4.1495 -3.9196 -6.7168 12 7 5.3003 -2.2632 -7.6410 13 6 5.6923 -3.1072 -8.7725 14 1 5.6926 -4.1695 -8.5280 15 6 4.9465 -2.7755 -10.0759 16 6 6.0740 -1.7673 -10.3687 17 1 5.8880 -0.7725 -9.9639 18 6 6.5065 -1.7403 -11.8360 19 7 5.6638 -0.7980 -12.5763 20 6 6.1032 0.2457 -13.3170 21 6 4.9977 0.8421 -13.8212 22 7 3.9495 0.1481 -13.3637 23 7 4.3778 -0.8172 -12.6293 24 6 6.9758 -2.6366 -9.4765 25 6 3.1912 -0.6875 -3.2666 26 6 2.7255 -0.0371 -2.1403 27 1 -0.3932 0.4417 -0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5880 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 0.9759 -2.5579 -0.7362 32 1 1.7933 -3.7213 -2.7454 33 1 3.5575 -1.0398 -5.8640 34 1 5.0119 -1.5533 -4.9754 35 1 5.5992 -1.3415 -7.5971 36 1 4.9093 -3.6057 -10.7812 37 1 3.9737 -2.3104 -9.9162 38 1 7.5480 -1.4257 -11.9022 39 1 6.4001 -2.7369 -12.2646 40 1 7.1295 0.5419 -13.4757 41 1 4.9676 1.7101 -14.4631 42 1 7.6402 -2.0596 -8.8332 43 1 7.4924 -3.4290 -10.0182 44 1 3.8152 -0.1625 -3.9746 45 1 2.9859 0.9967 -1.9678 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:20 Heat of formation + Delta-G solvation = 59.061473 kcal Electronic energy + Delta-G solvation = -28458.830154 eV Core-core repulsion = 24254.022856 eV Total energy + Delta-G solvation = -4204.807298 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.14222 -41.70402 -41.06784 -39.75315 -38.88673 -37.25258 -35.79089 -34.26649 -32.41423 -31.91701 -31.76216 -30.20969 -28.94587 -26.73808 -26.27027 -24.86876 -23.99741 -23.50133 -22.56824 -22.30490 -21.88103 -20.43912 -19.53560 -18.72083 -18.42308 -18.13314 -17.51048 -17.34860 -17.08288 -16.83845 -16.39677 -16.16669 -15.94317 -15.74453 -15.60817 -15.48104 -15.22499 -15.09109 -14.79514 -14.63279 -14.38611 -13.91350 -13.77360 -13.56606 -13.48423 -13.40904 -13.05157 -12.64304 -12.35612 -12.29408 -12.16082 -12.09050 -11.90868 -11.73447 -11.64824 -11.28291 -11.08390 -10.97216 -10.60236 -10.30216 -10.19906 -10.05660 -9.25803 -4.91698 0.25266 0.28946 0.71874 1.33171 1.36759 1.42985 1.54559 1.61185 1.64990 1.98205 2.54409 2.63058 3.30130 3.42495 3.44203 3.47315 3.60687 3.65295 3.71653 3.77068 3.80563 3.92186 3.99436 4.04671 4.07613 4.17893 4.29012 4.34204 4.37356 4.39920 4.41059 4.54724 4.64450 4.68204 4.75153 4.82322 4.86099 4.95475 4.96634 5.04300 5.10947 5.13864 5.23427 5.29460 5.47553 5.49975 5.67885 5.75155 6.22552 6.40958 6.49350 7.07064 7.57407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.083 4.083 3 Si 0.773 3.227 4 C -0.158 4.158 5 C -0.060 4.060 6 C -0.167 4.167 7 C 0.120 3.880 8 O -0.320 6.320 9 C 0.037 3.963 10 C 0.514 3.486 11 O -0.572 6.572 12 N -0.693 5.693 13 C 0.109 3.891 14 H 0.085 0.915 15 C -0.146 4.146 16 C -0.112 4.112 17 H 0.097 0.903 18 C 0.113 3.887 19 N -0.285 5.285 20 C -0.034 4.034 21 C -0.074 4.074 22 N -0.326 5.326 23 N -0.122 5.122 24 C -0.108 4.108 25 C -0.200 4.200 26 C -0.075 4.075 27 H 0.385 0.615 28 H 0.122 0.878 29 H -0.280 1.280 30 H -0.307 1.307 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.420 0.580 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.151 0.849 39 H 0.108 0.892 40 H 0.236 0.764 41 H 0.208 0.792 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.164 0.836 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.196 5.870 -1.710 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.191 4.191 3 Si 0.678 3.322 4 C -0.159 4.159 5 C -0.078 4.078 6 C -0.185 4.185 7 C 0.075 3.925 8 O -0.234 6.234 9 C -0.041 4.041 10 C 0.300 3.700 11 O -0.450 6.450 12 N -0.347 5.347 13 C 0.004 3.996 14 H 0.103 0.897 15 C -0.185 4.185 16 C -0.132 4.132 17 H 0.115 0.885 18 C -0.006 4.006 19 N -0.079 5.079 20 C -0.186 4.186 21 C -0.232 4.232 22 N -0.191 5.191 23 N -0.101 5.101 24 C -0.146 4.146 25 C -0.219 4.219 26 C -0.093 4.093 27 H 0.235 0.765 28 H 0.140 0.860 29 H -0.206 1.206 30 H -0.236 1.236 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.258 0.742 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.169 0.831 39 H 0.126 0.874 40 H 0.252 0.748 41 H 0.225 0.775 42 H 0.121 0.879 43 H 0.139 0.861 44 H 0.182 0.818 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.501 4.596 -0.795 12.411 hybrid contribution -0.635 0.534 -0.923 1.241 sum 10.866 5.130 -1.718 12.138 Atomic orbital electron populations 1.86569 1.18842 1.80396 1.50158 1.25257 0.83238 1.12071 0.98541 0.94158 0.90087 0.71592 0.76330 1.20299 1.02019 0.95149 0.98401 1.20911 0.97102 0.94062 0.95732 1.20625 1.01524 1.01302 0.95083 1.19227 0.94724 0.92060 0.86504 1.86130 1.65244 1.40295 1.31686 1.22741 0.97871 0.94046 0.89435 1.20573 0.78065 0.87540 0.83785 1.90769 1.55160 1.20342 1.78705 1.45349 1.51495 1.16450 1.21407 1.21920 0.97193 0.95562 0.84944 0.89719 1.23537 0.97978 0.99561 0.97429 1.22876 0.97407 0.99559 0.93317 0.88491 1.22647 0.94719 0.92757 0.90488 1.47882 1.05895 1.21594 1.32550 1.24423 1.03836 0.91332 0.98966 1.24222 0.88497 1.04490 1.06021 1.75104 1.29232 1.04113 1.10664 1.78287 0.93733 1.18935 1.19140 1.23258 0.94676 0.99860 0.96806 1.21495 1.05832 0.93221 1.01306 1.21068 0.95355 1.00168 0.92664 0.76548 0.86003 1.20597 1.23588 0.84836 0.85623 0.86154 0.85030 0.74196 0.88838 0.93323 0.83131 0.87377 0.74755 0.77531 0.87914 0.86055 0.81820 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.76 12.77 -148.98 -1.90 -3.66 16 2 C -0.08 0.05 2.82 71.24 0.20 0.25 16 3 Si 0.77 -2.37 29.78 68.60 2.04 -0.33 16 4 C -0.16 -0.04 5.39 -19.85 -0.11 -0.14 16 5 C -0.06 -0.18 9.60 22.25 0.21 0.03 16 6 C -0.17 -0.87 9.99 22.37 0.22 -0.65 16 7 C 0.12 0.44 6.69 22.51 0.15 0.59 16 8 O -0.32 -1.99 9.67 -73.35 -0.71 -2.70 16 9 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 10 C 0.51 1.32 7.91 87.66 0.69 2.02 16 11 O -0.57 -8.41 16.12 16.00 0.26 -8.15 16 12 N -0.69 3.63 5.26 -440.04 -2.32 1.32 16 13 C 0.11 -0.48 4.29 45.52 0.20 -0.28 16 14 H 0.08 0.09 7.50 -2.38 -0.02 0.07 16 15 C -0.15 0.40 7.45 31.22 0.23 0.63 16 16 C -0.11 1.11 3.65 -10.17 -0.04 1.07 16 17 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 18 C 0.11 -1.24 6.29 86.38 0.54 -0.70 16 19 N -0.28 0.62 3.44 -347.74 -1.20 -0.58 16 20 C -0.03 0.18 11.57 83.49 0.97 1.15 16 21 C -0.07 -0.09 12.06 83.73 1.01 0.92 16 22 N -0.33 -3.39 12.41 -58.26 -0.72 -4.11 16 23 N -0.12 -0.95 12.93 37.02 0.48 -0.47 16 24 C -0.11 1.40 7.38 31.12 0.23 1.63 16 25 C -0.20 0.51 9.04 22.37 0.20 0.71 16 26 C -0.08 0.21 8.66 22.25 0.19 0.40 16 27 H 0.39 -0.89 8.70 -74.06 -0.64 -1.53 16 28 H 0.12 -0.22 7.96 -2.39 -0.02 -0.24 16 29 H -0.28 -0.03 7.11 99.48 0.71 0.68 16 30 H -0.31 -1.65 7.11 99.48 0.71 -0.94 16 31 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.12 -1.05 7.67 -2.39 -0.02 -1.07 16 34 H 0.13 -1.42 7.65 -2.39 -0.02 -1.44 16 35 H 0.42 -5.37 8.70 -92.71 -0.81 -6.17 16 36 H 0.09 -0.23 7.90 -2.39 -0.02 -0.24 16 37 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.15 -2.86 8.07 -2.39 -0.02 -2.87 16 39 H 0.11 -1.23 7.85 -2.39 -0.02 -1.25 16 40 H 0.24 -3.69 8.06 -2.91 -0.02 -3.72 16 41 H 0.21 -0.97 8.06 -2.92 -0.02 -0.99 16 42 H 0.10 -1.65 8.14 -2.38 -0.02 -1.67 16 43 H 0.12 -1.91 8.10 -2.39 -0.02 -1.93 16 44 H 0.16 -1.63 6.30 -2.91 -0.02 -1.64 16 45 H 0.15 -1.22 4.87 -2.91 -0.01 -1.23 16 Total: 0.00 -37.59 382.55 0.84 -36.74 By element: Atomic # 1 Polarization: -25.57 SS G_CDS: -0.37 Total: -25.94 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.28 Total: 7.88 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -3.76 Total: -3.84 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -2.35 Total: -14.51 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.04 Total: -0.33 kcal Total: -37.59 0.84 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.805 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds