Wall clock time and date at job start Sun Mar 7 2021 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47606 * 2 1 4 4 C 1.50706 * 109.47147 * 120.00342 * 2 1 3 5 5 C 1.38243 * 119.96810 * 244.99770 * 4 2 1 6 6 C 1.38289 * 120.10565 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05926 * 0.04692 * 6 5 4 8 8 C 1.38751 * 119.94495 * 359.97422 * 7 6 5 9 9 O 1.35904 * 120.05904 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99431 * 0.02562 * 9 8 7 11 11 C 1.53007 * 109.46776 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47040 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00148 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99866 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99758 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.85032 * 336.19438 * 15 14 12 17 17 C 1.53782 * 113.68971 * 107.45966 * 15 14 12 18 18 C 1.53962 * 87.11063 * 89.19569 * 17 15 14 19 19 H 1.08993 * 113.61598 * 270.84305 * 18 17 15 20 20 C 1.52999 * 113.66529 * 139.88900 * 18 17 15 21 21 N 1.46494 * 109.47391 * 87.55384 * 20 18 17 22 22 C 1.35306 * 125.87288 * 124.71293 * 21 20 18 23 23 C 1.35351 * 106.17865 * 179.90714 * 22 21 20 24 24 N 1.33774 * 106.49326 * 0.35263 * 23 22 21 25 25 N 1.28632 * 108.88913 * 359.77219 * 24 23 22 26 26 C 1.53781 * 113.61266 * 204.99541 * 15 14 12 27 27 C 1.38163 * 119.97233 * 65.29304 * 4 2 1 28 28 H 0.96697 * 113.99570 * 299.99893 * 1 2 3 29 29 H 1.09009 * 109.46898 * 239.99714 * 2 1 3 30 30 H 1.48503 * 109.99942 * 300.00189 * 3 2 1 31 31 H 1.48497 * 110.00025 * 61.31860 * 3 2 1 32 32 H 1.07997 * 119.95071 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.97018 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02940 * 179.97438 * 7 6 5 35 35 H 1.08993 * 109.47724 * 60.00315 * 10 9 8 36 36 H 1.09008 * 109.47126 * 299.99383 * 10 9 8 37 37 H 1.09006 * 109.46863 * 60.00019 * 11 10 9 38 38 H 1.09000 * 109.47210 * 299.99943 * 11 10 9 39 39 H 0.97001 * 119.99554 * 359.97438 * 14 12 11 40 40 H 1.08997 * 113.61668 * 203.67120 * 17 15 14 41 41 H 1.08994 * 113.61387 * 334.57855 * 17 15 14 42 42 H 1.09002 * 109.47053 * 207.55709 * 20 18 17 43 43 H 1.09004 * 109.47121 * 327.55345 * 20 18 17 44 44 H 1.08004 * 126.91280 * 0.02562 * 22 21 20 45 45 H 1.07995 * 126.75184 * 180.12210 * 23 22 21 46 46 H 1.09002 * 113.61445 * 25.35018 * 26 15 14 47 47 H 1.09002 * 113.61408 * 156.16749 * 26 15 14 48 48 H 1.08001 * 120.02926 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.6388 -0.0118 2.1909 6 6 3.1006 -0.6608 3.3213 7 6 2.8568 -2.0094 3.4930 8 6 2.1475 -2.7130 2.5302 9 8 1.9059 -4.0400 2.6970 10 6 2.4112 -4.6466 3.8881 11 6 2.0444 -6.1320 3.8989 12 6 2.5779 -6.7720 5.1547 13 8 3.1915 -6.1057 5.9613 14 7 2.3740 -8.0849 5.3809 15 6 2.8930 -8.7071 6.6014 16 1 3.7381 -8.1654 7.0263 17 6 1.8035 -9.0535 7.6299 18 6 1.6815 -10.4171 6.9255 19 1 0.9622 -10.4227 6.1066 20 6 1.4969 -11.5915 7.8885 21 7 0.0709 -11.7709 8.1722 22 6 -0.6343 -12.9127 7.9998 23 6 -1.9020 -12.6347 8.3842 24 7 -1.9119 -11.3510 8.7606 25 7 -0.7278 -10.8677 8.6232 26 6 3.1359 -10.2196 6.4664 27 6 1.6898 -2.0609 1.3947 28 1 -0.3932 0.4417 0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 1.5616 2.4679 -1.2085 31 1 1.5881 2.4585 1.2242 32 1 2.8311 1.0426 2.0582 33 1 3.6527 -0.1127 4.0705 34 1 3.2181 -2.5159 4.3758 35 1 1.9740 -4.1577 4.7586 36 1 3.4957 -4.5404 3.9180 37 1 2.4820 -6.6207 3.0284 38 1 0.9601 -6.2387 3.8687 39 1 1.8835 -8.6178 4.7356 40 1 2.1746 -9.1234 8.6524 41 1 0.9099 -8.4353 7.5442 42 1 1.8941 -12.4994 7.4347 43 1 2.0292 -11.3868 8.8175 44 1 -0.2605 -13.8566 7.6314 45 1 -2.7413 -13.3143 8.3833 46 1 3.3180 -10.5429 5.4415 47 1 3.8724 -10.6081 7.1698 48 1 1.1416 -2.6074 0.6416 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567714_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:28 Heat of formation + Delta-G solvation = 53.886727 kcal Electronic energy + Delta-G solvation = -30065.980410 eV Core-core repulsion = 25705.411099 eV Total energy + Delta-G solvation = -4360.569311 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.17996 -41.60608 -41.17421 -39.82404 -39.03602 -37.31840 -35.87423 -34.31017 -33.19783 -32.44124 -31.96178 -30.83445 -29.66740 -27.04774 -26.99244 -25.84308 -24.54642 -23.64694 -23.56153 -22.43012 -22.24733 -21.57140 -20.58806 -19.38780 -18.76787 -18.21837 -17.76640 -17.51816 -17.35448 -17.19896 -17.09334 -16.81622 -16.26321 -16.13395 -15.99058 -15.75207 -15.50551 -15.43907 -15.21591 -14.91592 -14.65954 -14.40586 -14.26346 -14.04972 -13.92716 -13.70199 -13.29336 -13.20278 -12.95792 -12.84725 -12.71591 -12.51409 -12.37638 -11.98626 -11.88871 -11.83290 -11.82221 -11.53360 -11.51968 -11.08483 -11.04060 -10.60728 -10.33847 -10.25080 -9.89901 -9.20999 -4.93292 0.25382 0.45053 0.63511 1.28602 1.30463 1.43352 1.60921 1.62644 1.67315 1.97859 2.39284 2.71034 3.00150 3.15354 3.31880 3.40156 3.41347 3.45949 3.56310 3.65621 3.76499 3.80111 3.80999 3.83480 3.90598 4.06186 4.08325 4.10905 4.23745 4.27338 4.28339 4.34060 4.38320 4.45036 4.54537 4.55727 4.58090 4.61176 4.65948 4.72935 4.75413 4.87730 4.92124 5.01243 5.21360 5.30476 5.35849 5.41953 5.48391 5.57925 5.72178 6.23759 6.39925 6.42180 7.00841 7.58261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.076 4.076 3 Si 0.691 3.309 4 C -0.080 4.080 5 C -0.156 4.156 6 C -0.073 4.073 7 C -0.201 4.201 8 C 0.132 3.868 9 O -0.316 6.316 10 C 0.075 3.925 11 C -0.142 4.142 12 C 0.525 3.475 13 O -0.534 6.534 14 N -0.712 5.712 15 C 0.119 3.881 16 H 0.109 0.891 17 C -0.138 4.138 18 C -0.126 4.126 19 H 0.098 0.902 20 C 0.123 3.877 21 N -0.291 5.291 22 C -0.054 4.054 23 C -0.051 4.051 24 N -0.273 5.273 25 N -0.079 5.079 26 C -0.134 4.134 27 C -0.125 4.125 28 H 0.376 0.624 29 H 0.120 0.880 30 H -0.257 1.257 31 H -0.260 1.260 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.403 0.597 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.190 0.810 45 H 0.190 0.810 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -5.992 -1.654 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.186 4.186 3 Si 0.592 3.408 4 C -0.081 4.081 5 C -0.174 4.174 6 C -0.091 4.091 7 C -0.220 4.220 8 C 0.087 3.913 9 O -0.230 6.230 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.311 3.689 13 O -0.410 6.410 14 N -0.364 5.364 15 C 0.013 3.987 16 H 0.127 0.873 17 C -0.177 4.177 18 C -0.145 4.145 19 H 0.116 0.884 20 C 0.002 3.998 21 N -0.085 5.085 22 C -0.204 4.204 23 C -0.208 4.208 24 N -0.139 5.139 25 N -0.059 5.059 26 C -0.173 4.173 27 C -0.144 4.144 28 H 0.224 0.776 29 H 0.137 0.863 30 H -0.182 1.182 31 H -0.185 1.185 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.207 0.793 45 H 0.207 0.793 46 H 0.100 0.900 47 H 0.121 0.879 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.352 -3.648 -1.280 6.603 hybrid contribution -1.069 -1.911 0.106 2.192 sum 4.283 -5.559 -1.174 7.115 Atomic orbital electron populations 1.86609 1.17553 1.80017 1.49290 1.25078 0.84077 1.11129 0.98287 0.94850 0.91682 0.74204 0.80083 1.20059 0.98010 0.93586 0.96440 1.20978 1.01375 0.99946 0.95093 1.20929 0.97578 0.93652 0.96961 1.21398 1.04086 0.95970 1.00565 1.18957 0.95206 0.82642 0.94509 1.85975 1.74490 1.20322 1.42225 1.22410 0.99717 0.91735 0.86239 1.21470 1.04341 0.95163 0.97195 1.20301 0.79253 0.81932 0.87400 1.90760 1.40577 1.62211 1.47473 1.45612 1.57992 1.09668 1.23129 1.21824 0.97800 0.93355 0.85680 0.87271 1.23507 0.99998 0.95304 0.98858 1.22976 0.98467 0.94526 0.98549 0.88375 1.22234 0.74921 1.01267 1.01377 1.47544 1.11023 1.08128 1.41772 1.23747 0.93490 0.93912 1.09300 1.23690 0.97635 0.94748 1.04766 1.75177 1.11967 1.09134 1.17647 1.78355 0.95613 1.16121 1.15810 1.23342 0.95515 0.95318 1.03126 1.20248 1.03286 0.93689 0.97144 0.77596 0.86259 1.18236 1.18521 0.85393 0.85166 0.84972 0.90899 0.90839 0.87366 0.87399 0.76227 0.88539 0.90188 0.87280 0.87854 0.79276 0.79327 0.90012 0.87856 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.99 12.84 -35.23 -0.45 -1.45 16 2 C -0.08 -0.03 2.80 36.01 0.10 0.07 16 3 Si 0.69 -0.41 29.88 -169.99 -5.08 -5.49 16 4 C -0.08 -0.09 5.35 -104.64 -0.56 -0.65 16 5 C -0.16 -0.07 8.67 -39.56 -0.34 -0.41 16 6 C -0.07 -0.04 10.04 -39.61 -0.40 -0.44 16 7 C -0.20 -0.29 9.04 -39.44 -0.36 -0.64 16 8 C 0.13 0.31 6.69 -39.22 -0.26 0.05 16 9 O -0.32 -0.63 10.14 -19.44 -0.20 -0.83 16 10 C 0.07 0.02 4.03 37.16 0.15 0.17 16 11 C -0.14 0.26 6.07 -27.88 -0.17 0.09 16 12 C 0.52 -0.03 7.83 -10.98 -0.09 -0.11 16 13 O -0.53 -2.10 15.58 5.55 0.09 -2.01 16 14 N -0.71 1.76 5.27 -53.02 -0.28 1.48 16 15 C 0.12 -0.29 4.32 -67.12 -0.29 -0.58 16 16 H 0.11 -0.08 7.46 -51.93 -0.39 -0.47 16 17 C -0.14 0.27 7.44 -25.82 -0.19 0.08 16 18 C -0.13 0.50 3.65 -89.71 -0.33 0.17 16 19 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 20 C 0.12 -0.51 6.29 -4.05 -0.03 -0.54 16 21 N -0.29 0.10 3.44 -61.26 -0.21 -0.11 16 22 C -0.05 0.07 11.57 -17.05 -0.20 -0.12 16 23 C -0.05 -0.05 12.05 -17.74 -0.21 -0.26 16 24 N -0.27 -1.28 12.41 30.23 0.38 -0.90 16 25 N -0.08 -0.28 12.93 60.35 0.78 0.50 16 26 C -0.13 0.69 7.38 -25.92 -0.19 0.50 16 27 C -0.12 -0.27 9.63 -39.43 -0.38 -0.65 16 28 H 0.38 -0.34 8.70 45.56 0.40 0.06 16 29 H 0.12 -0.05 7.96 -51.92 -0.41 -0.47 16 30 H -0.26 -0.67 7.11 56.52 0.40 -0.27 16 31 H -0.26 -0.34 7.01 56.52 0.40 0.05 16 32 H 0.13 -0.16 4.84 -52.49 -0.25 -0.41 16 33 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 34 H 0.13 0.06 6.30 -52.49 -0.33 -0.27 16 35 H 0.07 0.06 7.62 -51.93 -0.40 -0.33 16 36 H 0.07 0.03 7.62 -51.92 -0.40 -0.36 16 37 H 0.11 -0.37 8.14 -51.93 -0.42 -0.80 16 38 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 39 H 0.40 -1.96 8.71 -40.82 -0.36 -2.31 16 40 H 0.10 -0.21 7.90 -51.93 -0.41 -0.62 16 41 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.11 -0.75 8.07 -51.93 -0.42 -1.17 16 43 H 0.10 -0.49 7.85 -51.93 -0.41 -0.90 16 44 H 0.19 -1.02 8.06 -52.48 -0.42 -1.44 16 45 H 0.19 -0.38 8.06 -52.49 -0.42 -0.80 16 46 H 0.08 -0.46 8.14 -51.93 -0.42 -0.88 16 47 H 0.10 -0.64 8.10 -51.93 -0.42 -1.06 16 48 H 0.13 0.27 8.06 -52.49 -0.42 -0.16 16 LS Contribution 403.51 15.07 6.08 6.08 Total: 0.00 -11.62 403.51 -9.44 -21.06 By element: Atomic # 1 Polarization: -8.28 SS G_CDS: -6.80 Total: -15.09 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.74 Total: -3.26 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: 0.67 Total: 0.98 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.56 Total: -4.28 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: -5.08 Total: -5.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -11.62 -9.44 -21.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.946 kcal (2) G-P(sol) polarization free energy of solvation -11.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds