Wall clock time and date at job start Sun Mar 7 2021 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47208 * 2 1 4 4 C 1.50696 * 109.47218 * 240.00088 * 2 1 3 5 5 C 1.38247 * 119.97404 * 120.02188 * 4 2 1 6 6 C 1.38286 * 120.11033 * 179.97438 * 5 4 2 7 7 C 1.38128 * 120.05647 * 359.67984 * 6 5 4 8 8 C 1.38757 * 119.94236 * 0.59604 * 7 6 5 9 9 O 1.35897 * 120.05589 * 179.70324 * 8 7 6 10 10 C 1.42908 * 117.00013 * 359.72444 * 9 8 7 11 11 C 1.52996 * 109.47066 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46912 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46979 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00372 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99816 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99916 * 180.02562 * 15 13 12 17 17 H 1.09003 * 112.85023 * 336.19095 * 16 15 13 18 18 C 1.53784 * 113.61524 * 107.49881 * 16 15 13 19 19 C 1.53775 * 87.08070 * 89.11715 * 18 16 15 20 20 H 1.09000 * 113.68942 * 270.87475 * 19 18 16 21 21 C 1.52995 * 113.61526 * 139.98014 * 19 18 16 22 22 N 1.46506 * 109.47276 * 87.50108 * 21 19 18 23 23 C 1.35312 * 125.86709 * 124.71314 * 22 21 19 24 24 C 1.35352 * 106.17240 * 179.90780 * 23 22 21 25 25 N 1.33775 * 106.49643 * 0.35153 * 24 23 22 26 26 N 1.28629 * 108.88590 * 359.77853 * 25 24 23 27 27 C 1.53777 * 113.61480 * 204.99711 * 16 15 13 28 28 C 1.38172 * 119.96937 * 300.00058 * 4 2 1 29 29 H 0.96703 * 113.99884 * 300.00027 * 1 2 3 30 30 H 1.08998 * 109.47203 * 119.99939 * 2 1 3 31 31 H 1.48497 * 109.99956 * 178.67967 * 3 2 1 32 32 H 1.48498 * 109.99676 * 299.99916 * 3 2 1 33 33 H 1.07993 * 119.94347 * 359.97438 * 5 4 2 34 34 H 1.08003 * 119.97458 * 179.97438 * 6 5 4 35 35 H 1.08002 * 120.02787 * 180.32672 * 7 6 5 36 36 H 1.09000 * 109.47333 * 59.99742 * 10 9 8 37 37 H 1.09004 * 109.46771 * 300.00412 * 10 9 8 38 38 H 1.08987 * 109.47554 * 59.99700 * 11 10 9 39 39 H 1.09002 * 109.46638 * 299.99444 * 11 10 9 40 40 H 1.08999 * 109.47471 * 59.99869 * 12 11 10 41 41 H 1.09003 * 109.47399 * 299.99318 * 12 11 10 42 42 H 0.96997 * 119.99896 * 359.97438 * 15 13 12 43 43 H 1.08997 * 113.61347 * 334.56560 * 18 16 15 44 44 H 1.09003 * 113.61021 * 203.66840 * 18 16 15 45 45 H 1.08997 * 109.47344 * 327.49881 * 21 19 18 46 46 H 1.08998 * 109.47310 * 207.49907 * 21 19 18 47 47 H 1.07995 * 126.91362 * 0.02562 * 23 22 21 48 48 H 1.08000 * 126.75115 * 180.12638 * 24 23 22 49 49 H 1.08999 * 113.61434 * 156.33533 * 27 16 15 50 50 H 1.09006 * 113.69080 * 25.43880 * 27 16 15 51 51 H 1.07995 * 120.03043 * 0.03991 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0381 -2.1398 6 6 3.1895 -0.6874 -3.2696 7 6 2.8638 -2.0117 -3.4888 8 6 2.0611 -2.6870 -2.5805 9 8 1.7343 -3.9882 -2.7969 10 6 2.2470 -4.5972 -3.9837 11 6 1.7764 -6.0512 -4.0550 12 6 2.3259 -6.7033 -5.3253 13 6 1.8629 -8.1357 -5.3953 14 8 1.1627 -8.5904 -4.5155 15 7 2.2277 -8.9118 -6.4351 16 6 1.7771 -10.3042 -6.5034 17 1 1.5273 -10.7167 -5.5258 18 6 0.6993 -10.5512 -7.5721 19 6 1.8492 -10.8191 -8.5572 20 1 2.2051 -9.9248 -9.0688 21 6 1.5786 -11.9825 -9.5133 22 7 0.8688 -11.4880 -10.6957 23 6 1.2629 -11.6455 -11.9805 24 6 0.3207 -11.0403 -12.7408 25 7 -0.5876 -10.5418 -11.8946 26 7 -0.2339 -10.8240 -10.6905 27 6 2.6992 -11.2099 -7.3366 28 6 1.5972 -2.0332 -1.4485 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 0.8900 31 1 3.5346 1.7703 0.0322 32 1 1.5615 2.4679 -1.2085 33 1 2.9865 0.9958 -1.9676 34 1 3.8102 -0.1600 -3.9788 35 1 3.2299 -2.5198 -4.3687 36 1 3.3365 -4.5679 -3.9656 37 1 1.8836 -4.0547 -4.8566 38 1 0.6871 -6.0801 -4.0734 39 1 2.1396 -6.5938 -3.1822 40 1 3.4154 -6.6745 -5.3065 41 1 1.9631 -6.1609 -6.1984 42 1 2.7880 -8.5483 -7.1385 43 1 0.1140 -9.6643 -7.8150 44 1 0.0808 -11.4267 -7.3742 45 1 0.9679 -12.7320 -9.0100 46 1 2.5247 -12.4298 -9.8182 47 1 2.1497 -12.1537 -12.3293 48 1 0.3070 -10.9701 -13.8184 49 1 2.6274 -12.2654 -7.0745 50 1 3.7288 -10.8560 -7.3902 51 1 0.9758 -2.5579 -0.7380 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:30 Heat of formation + Delta-G solvation = 44.526226 kcal Electronic energy + Delta-G solvation = -31628.343215 eV Core-core repulsion = 27111.830383 eV Total energy + Delta-G solvation = -4516.512832 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.15956 -41.48010 -41.29107 -39.72540 -39.15312 -37.37494 -35.79112 -34.98193 -34.07515 -32.68826 -31.93283 -31.41102 -29.73652 -28.29025 -26.86152 -26.74835 -24.90584 -23.84132 -23.63090 -23.44735 -22.32554 -21.90399 -21.54125 -20.38717 -19.02748 -18.66966 -18.43603 -18.17310 -17.55386 -17.54161 -17.31408 -17.04536 -16.99432 -16.43585 -15.97153 -15.89569 -15.66308 -15.43112 -15.36188 -15.14680 -14.85802 -14.69520 -14.64590 -14.38167 -14.09639 -13.90001 -13.57704 -13.46982 -13.30489 -13.26692 -13.05102 -12.65081 -12.64754 -12.49494 -12.35238 -12.31679 -12.11749 -11.91826 -11.79320 -11.73418 -11.68585 -11.30159 -11.04820 -10.97779 -10.44276 -10.31763 -10.12345 -9.97603 -9.39577 -4.94230 0.07000 0.23137 0.70235 1.26934 1.51049 1.54349 1.63615 1.64290 1.84278 1.96435 2.28751 2.51088 3.29452 3.36470 3.43268 3.54516 3.59333 3.63660 3.68493 3.76833 3.78108 3.82078 3.82973 3.95159 4.04794 4.08267 4.14748 4.15653 4.26972 4.30145 4.32460 4.34547 4.35747 4.38795 4.39754 4.55683 4.57669 4.66955 4.72775 4.83406 4.84657 4.85212 4.94685 4.95909 5.02645 5.06079 5.12008 5.16124 5.20343 5.28126 5.29085 5.55031 5.57143 5.73218 6.30759 6.45992 6.87191 7.18689 7.55876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.089 4.089 3 Si 0.787 3.213 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.123 3.877 9 O -0.333 6.333 10 C 0.056 3.944 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.587 6.587 15 N -0.703 5.703 16 C 0.107 3.893 17 H 0.083 0.917 18 C -0.145 4.145 19 C -0.112 4.112 20 H 0.095 0.905 21 C 0.114 3.886 22 N -0.285 5.285 23 C -0.035 4.035 24 C -0.074 4.074 25 N -0.326 5.326 26 N -0.121 5.121 27 C -0.110 4.110 28 C -0.146 4.146 29 H 0.404 0.596 30 H 0.093 0.907 31 H -0.284 1.284 32 H -0.296 1.296 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.417 0.583 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.150 0.850 47 H 0.236 0.764 48 H 0.209 0.791 49 H 0.119 0.881 50 H 0.099 0.901 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -1.877 -2.409 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.197 4.197 3 Si 0.692 3.308 4 C -0.052 4.052 5 C -0.202 4.202 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.077 3.923 9 O -0.248 6.248 10 C -0.018 4.018 11 C -0.139 4.139 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.467 6.467 15 N -0.354 5.354 16 C 0.001 3.999 17 H 0.102 0.898 18 C -0.184 4.184 19 C -0.131 4.131 20 H 0.113 0.887 21 C -0.006 4.006 22 N -0.079 5.079 23 C -0.186 4.186 24 C -0.231 4.231 25 N -0.191 5.191 26 N -0.101 5.101 27 C -0.149 4.149 28 C -0.165 4.165 29 H 0.255 0.745 30 H 0.111 0.889 31 H -0.211 1.211 32 H -0.224 1.224 33 H 0.139 0.861 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.168 0.832 47 H 0.252 0.748 48 H 0.225 0.775 49 H 0.138 0.862 50 H 0.117 0.883 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.467 -1.470 -1.720 9.734 hybrid contribution 0.617 -0.848 -1.251 1.632 sum 10.083 -2.318 -2.972 10.765 Atomic orbital electron populations 1.86451 1.17220 1.82527 1.51355 1.25017 0.85974 1.11818 0.96932 0.94304 0.77216 0.74569 0.84678 1.19518 0.96511 0.93236 0.95974 1.20994 1.02766 0.99702 0.96697 1.21223 0.97563 0.94000 0.96328 1.21585 1.02862 0.96354 1.01622 1.19195 0.94653 0.83734 0.94710 1.86062 1.71531 1.22398 1.44765 1.23032 0.99840 0.93235 0.85721 1.21144 1.01518 0.92817 0.98438 1.21535 1.04816 0.90583 0.99793 1.21172 0.78980 0.89195 0.80797 1.90738 1.39556 1.75984 1.40447 1.45598 1.53188 1.11595 1.25065 1.21889 0.96565 0.82283 0.99141 0.89849 1.23470 0.96744 1.02168 0.96016 1.22802 0.97762 0.98109 0.94448 0.88709 1.22636 0.98692 0.97041 0.82183 1.47877 1.16079 1.34960 1.09027 1.24430 1.04765 1.06525 0.82905 1.24224 0.93424 1.02724 1.02772 1.75101 1.26223 1.21277 0.96472 1.78285 1.01292 1.13296 1.17212 1.23257 0.98788 1.01276 0.91542 1.20365 1.03626 0.94554 0.97979 0.74473 0.88946 1.21103 1.22370 0.86117 0.82672 0.82322 0.89475 0.90130 0.92373 0.91714 0.85045 0.85938 0.74611 0.93344 0.88955 0.87366 0.83213 0.74765 0.77470 0.86247 0.88297 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.72 12.74 -148.98 -1.90 -3.62 16 2 C -0.09 -0.21 2.81 71.23 0.20 -0.01 16 3 Si 0.79 -0.60 29.79 68.60 2.04 1.44 16 4 C -0.05 -0.43 5.42 -19.88 -0.11 -0.53 16 5 C -0.18 -1.27 8.67 22.28 0.19 -1.07 16 6 C -0.07 -0.26 10.04 22.26 0.22 -0.04 16 7 C -0.21 -0.70 9.04 22.37 0.20 -0.50 16 8 C 0.12 1.00 6.69 22.51 0.15 1.15 16 9 O -0.33 -2.69 10.14 -92.40 -0.94 -3.63 16 10 C 0.06 -0.03 4.74 71.98 0.34 0.31 16 11 C -0.10 -0.14 4.87 30.59 0.15 0.01 16 12 C -0.13 0.68 5.70 29.85 0.17 0.85 16 13 C 0.51 1.07 7.83 87.66 0.69 1.76 16 14 O -0.59 -7.73 15.58 -3.04 -0.05 -7.78 16 15 N -0.70 2.74 5.26 -440.02 -2.32 0.43 16 16 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 17 H 0.08 0.20 7.46 -2.39 -0.02 0.18 16 18 C -0.15 0.22 7.43 31.12 0.23 0.45 16 19 C -0.11 0.93 3.64 -10.27 -0.04 0.90 16 20 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 21 C 0.11 -1.11 6.29 86.38 0.54 -0.57 16 22 N -0.29 0.35 3.44 -347.74 -1.20 -0.85 16 23 C -0.03 0.16 11.57 83.49 0.97 1.12 16 24 C -0.07 -0.14 12.05 83.73 1.01 0.87 16 25 N -0.33 -3.59 12.41 -58.25 -0.72 -4.32 16 26 N -0.12 -1.04 12.93 37.02 0.48 -0.56 16 27 C -0.11 1.24 7.39 31.12 0.23 1.47 16 28 C -0.15 -1.46 9.55 22.37 0.21 -1.25 16 29 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 30 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H -0.28 -1.08 7.11 99.48 0.71 -0.37 16 32 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 33 H 0.12 0.66 4.87 -2.91 -0.01 0.65 16 34 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 35 H 0.16 -0.50 6.30 -2.91 -0.02 -0.52 16 36 H 0.09 -0.44 7.65 -2.39 -0.02 -0.46 16 37 H 0.08 -0.30 7.67 -2.38 -0.02 -0.32 16 38 H 0.06 0.38 8.10 -2.39 -0.02 0.36 16 39 H 0.06 0.34 8.10 -2.39 -0.02 0.32 16 40 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 41 H 0.12 -1.19 8.14 -2.39 -0.02 -1.21 16 42 H 0.42 -4.35 8.70 -92.71 -0.81 -5.16 16 43 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.09 -0.12 7.90 -2.39 -0.02 -0.14 16 45 H 0.11 -1.11 7.84 -2.39 -0.02 -1.13 16 46 H 0.15 -2.65 8.07 -2.39 -0.02 -2.67 16 47 H 0.24 -3.50 8.06 -2.91 -0.02 -3.53 16 48 H 0.21 -0.86 8.06 -2.91 -0.02 -0.89 16 49 H 0.12 -1.67 8.10 -2.39 -0.02 -1.69 16 50 H 0.10 -1.37 8.14 -2.38 -0.02 -1.39 16 51 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 Total: 0.00 -39.03 424.97 0.51 -38.52 By element: Atomic # 1 Polarization: -23.98 SS G_CDS: -0.45 Total: -24.43 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.56 Total: 4.79 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -3.76 Total: -5.30 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -2.88 Total: -15.02 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.04 Total: 1.44 kcal Total: -39.03 0.51 -38.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.045 kcal (2) G-P(sol) polarization free energy of solvation -39.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds