Wall clock time and date at job start Sun Mar 7 2021 07:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3 5 5 C 1.38271 * 119.94391 * 119.72423 * 4 2 1 6 6 C 1.38148 * 120.05274 * 179.72564 * 5 4 2 7 7 C 1.38730 * 119.94378 * 0.57432 * 6 5 4 8 8 O 1.35900 * 120.05580 * 179.67764 * 7 6 5 9 9 C 1.42902 * 117.00003 * 0.02570 * 8 7 6 10 10 C 1.50696 * 109.47499 * 179.97438 * 9 8 7 11 11 C 1.36416 * 125.80462 * 89.99343 * 10 9 8 12 12 C 1.47385 * 127.19054 * 0.02562 * 11 10 9 13 13 O 1.21615 * 119.99906 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99990 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00023 * 180.02562 * 14 12 11 16 16 H 1.09008 * 112.85023 * 336.20455 * 15 14 12 17 17 C 1.53778 * 113.61286 * 107.50744 * 15 14 12 18 18 C 1.53782 * 87.08277 * 89.11832 * 17 15 14 19 19 H 1.08996 * 113.68934 * 270.87247 * 18 17 15 20 20 C 1.52999 * 113.61545 * 139.98256 * 18 17 15 21 21 N 1.46494 * 109.47414 * 87.50124 * 20 18 17 22 22 C 1.35308 * 125.86741 * 124.99819 * 21 20 18 23 23 C 1.35353 * 106.17430 * 180.02562 * 22 21 20 24 24 N 1.33767 * 106.49844 * 0.02562 * 23 22 21 25 25 N 1.28643 * 108.88385 * 359.73210 * 24 23 22 26 26 C 1.53774 * 113.61837 * 205.00552 * 15 14 12 27 27 C 1.47014 * 105.62035 * 179.97438 * 11 10 9 28 28 C 1.34179 * 105.95107 * 359.97438 * 27 11 10 29 29 O 1.33650 * 125.79858 * 269.69112 * 10 9 8 30 30 C 1.38736 * 119.88967 * 359.70253 * 7 6 5 31 31 C 1.38141 * 119.94155 * 359.97438 * 30 7 6 32 32 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 33 33 H 1.09001 * 109.47255 * 120.00067 * 2 1 3 34 34 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 35 35 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 36 36 H 1.07996 * 119.97091 * 359.97438 * 5 4 2 37 37 H 1.07997 * 120.02591 * 180.24693 * 6 5 4 38 38 H 1.08999 * 109.46924 * 299.99564 * 9 8 7 39 39 H 1.08995 * 109.47129 * 59.99295 * 9 8 7 40 40 H 0.96998 * 119.99966 * 0.02562 * 14 12 11 41 41 H 1.09009 * 113.61385 * 203.66479 * 17 15 14 42 42 H 1.08998 * 113.61418 * 334.56680 * 17 15 14 43 43 H 1.08999 * 109.46967 * 207.50377 * 20 18 17 44 44 H 1.09005 * 109.47157 * 327.49742 * 20 18 17 45 45 H 1.07998 * 126.91740 * 0.02562 * 22 21 20 46 46 H 1.08005 * 126.74766 * 180.02562 * 23 22 21 47 47 H 1.09006 * 113.61432 * 25.43114 * 26 15 14 48 48 H 1.08992 * 113.61931 * 156.25209 * 26 15 14 49 49 H 1.08000 * 127.02414 * 180.02562 * 27 11 10 50 50 H 1.08005 * 125.43861 * 179.97438 * 28 27 11 51 51 H 1.07995 * 120.02461 * 179.97438 * 30 7 6 52 52 H 1.07999 * 119.96989 * 180.02562 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1881 -0.6863 -3.2684 7 6 2.8533 -2.0144 -3.4893 8 8 3.3056 -2.6548 -4.5994 9 6 4.1221 -1.8996 -5.4966 10 6 4.5267 -2.7682 -6.6597 11 6 3.8376 -2.9086 -7.8286 12 6 2.5714 -2.2526 -8.2006 13 8 2.0304 -1.4898 -7.4231 14 7 2.0135 -2.4972 -9.4028 15 6 0.7551 -1.8447 -9.7728 16 1 0.1676 -1.5368 -8.9077 17 6 0.9212 -0.7415 -10.8311 18 6 0.7259 -1.8382 -11.8913 19 1 1.6534 -2.3227 -12.1962 20 6 -0.1322 -1.3970 -13.0787 21 7 0.7204 -0.7679 -14.0903 22 6 0.8060 -1.1299 -15.3913 23 6 1.7044 -0.2909 -15.9577 24 7 2.1194 0.5322 -14.9883 25 7 1.5136 0.2268 -13.8953 26 6 -0.0560 -2.6213 -10.8233 27 6 4.6226 -3.8500 -8.6403 28 6 5.6891 -4.1788 -7.8954 29 8 5.6247 -3.5276 -6.7235 30 6 2.0556 -2.6875 -2.5754 31 6 1.5971 -2.0343 -1.4478 32 1 -0.3934 0.4417 0.7649 33 1 1.7923 -0.5138 0.8900 34 1 1.5614 2.4679 -1.2085 35 1 1.5878 2.4586 1.2242 36 1 2.9776 0.9997 -1.9728 37 1 3.8085 -0.1600 -3.9787 38 1 3.5607 -1.0400 -5.8627 39 1 5.0140 -1.5549 -4.9734 40 1 2.4451 -3.1053 -10.0231 41 1 0.1224 0.0002 -10.8179 42 1 1.9152 -0.2943 -10.8434 43 1 -0.6284 -2.2659 -13.5110 44 1 -0.8817 -0.6820 -12.7395 45 1 0.2663 -1.9278 -15.8795 46 1 2.0235 -0.2867 -16.9896 47 1 0.1492 -3.6918 -10.8295 48 1 -1.1220 -2.3947 -10.8070 49 1 4.3891 -4.2039 -9.6336 50 1 6.4755 -4.8570 -8.1925 51 1 1.7932 -3.7212 -2.7454 52 1 0.9764 -2.5580 -0.7358 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:44 Heat of formation + Delta-G solvation = 80.275750 kcal Electronic energy + Delta-G solvation = -37665.795826 eV Core-core repulsion = 32603.010215 eV Total energy + Delta-G solvation = -5062.785611 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -44.15231 -43.75758 -41.33797 -41.26183 -39.54629 -39.15852 -37.40234 -35.80905 -34.58827 -33.68890 -32.88507 -32.01612 -31.92384 -31.50871 -29.64237 -27.95077 -26.76683 -26.19963 -25.44380 -24.24221 -23.82270 -23.50371 -22.55072 -22.29092 -22.16333 -21.09158 -20.32311 -19.51998 -19.26753 -18.57120 -18.51719 -17.71116 -17.41869 -17.20931 -17.13242 -16.96834 -16.78953 -16.63797 -16.11280 -15.98734 -15.82895 -15.73938 -15.53766 -15.29851 -15.24811 -15.06275 -14.70242 -14.52336 -14.29189 -14.11571 -13.95391 -13.86426 -13.82539 -13.49614 -13.42665 -13.18659 -13.09318 -12.64680 -12.54878 -12.35034 -12.18333 -11.95362 -11.92131 -11.78443 -11.74857 -11.31748 -11.23394 -11.01380 -10.98863 -10.49989 -10.30953 -10.20475 -10.07350 -9.86654 -9.25118 -4.94759 -0.08290 0.23712 0.27430 0.70956 0.99046 1.29661 1.47067 1.52504 1.58062 1.64440 1.94067 1.96343 2.07664 2.42546 2.58571 3.28317 3.30521 3.39776 3.41158 3.54177 3.57842 3.62998 3.66401 3.70881 3.77747 3.79407 3.89749 3.94163 4.04288 4.07692 4.15450 4.26013 4.32699 4.36397 4.37841 4.39356 4.41562 4.43516 4.51203 4.65086 4.66041 4.71952 4.76242 4.81592 4.84363 4.92793 4.94113 5.01646 5.09120 5.12307 5.21970 5.22719 5.28785 5.45963 5.49301 5.65303 5.73658 5.84521 6.22471 6.36785 6.60012 7.04565 7.56600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.079 4.079 3 Si 0.759 3.241 4 C -0.123 4.123 5 C -0.079 4.079 6 C -0.205 4.205 7 C 0.123 3.877 8 O -0.320 6.320 9 C 0.134 3.866 10 C 0.043 3.957 11 C -0.226 4.226 12 C 0.585 3.415 13 O -0.571 6.571 14 N -0.691 5.691 15 C 0.108 3.892 16 H 0.087 0.913 17 C -0.142 4.142 18 C -0.111 4.111 19 H 0.094 0.906 20 C 0.114 3.886 21 N -0.285 5.285 22 C -0.035 4.035 23 C -0.073 4.073 24 N -0.325 5.325 25 N -0.121 5.121 26 C -0.111 4.111 27 C -0.198 4.198 28 C -0.010 4.010 29 O -0.175 6.175 30 C -0.161 4.161 31 C -0.058 4.058 32 H 0.395 0.605 33 H 0.098 0.902 34 H -0.303 1.303 35 H -0.283 1.283 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.414 0.586 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.150 0.850 44 H 0.110 0.890 45 H 0.236 0.764 46 H 0.209 0.791 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.190 0.810 50 H 0.254 0.746 51 H 0.137 0.863 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -7.660 -3.430 8.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.188 4.188 3 Si 0.665 3.335 4 C -0.124 4.124 5 C -0.096 4.096 6 C -0.224 4.224 7 C 0.078 3.922 8 O -0.235 6.235 9 C 0.060 3.940 10 C -0.010 4.010 11 C -0.231 4.231 12 C 0.373 3.627 13 O -0.452 6.452 14 N -0.342 5.342 15 C 0.003 3.997 16 H 0.105 0.895 17 C -0.181 4.181 18 C -0.131 4.131 19 H 0.112 0.888 20 C -0.005 4.005 21 N -0.079 5.079 22 C -0.187 4.187 23 C -0.231 4.231 24 N -0.190 5.190 25 N -0.101 5.101 26 C -0.149 4.149 27 C -0.217 4.217 28 C -0.075 4.075 29 O -0.071 6.071 30 C -0.180 4.180 31 C -0.076 4.076 32 H 0.245 0.755 33 H 0.116 0.884 34 H -0.231 1.231 35 H -0.210 1.210 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.251 0.749 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.168 0.832 44 H 0.128 0.872 45 H 0.252 0.748 46 H 0.225 0.775 47 H 0.115 0.885 48 H 0.141 0.859 49 H 0.207 0.793 50 H 0.269 0.731 51 H 0.155 0.845 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.285 -5.822 -2.214 6.235 hybrid contribution -1.279 -0.718 -0.839 1.689 sum -0.994 -6.540 -3.053 7.286 Atomic orbital electron populations 1.86550 1.18692 1.80623 1.51077 1.24924 0.83901 1.11546 0.98398 0.94265 0.90452 0.72420 0.76355 1.19441 1.00887 0.94774 0.97267 1.20966 0.96253 0.99744 0.92642 1.21383 1.06199 0.93878 1.00935 1.19164 0.94790 0.91830 0.86377 1.86040 1.65303 1.40489 1.31635 1.21130 0.95502 0.91171 0.86193 1.22031 0.86980 0.95951 0.96067 1.21372 0.98568 1.05896 0.97244 1.17462 0.83294 0.80177 0.81728 1.90785 1.64144 1.38336 1.51938 1.45314 1.24613 1.47630 1.16640 1.21944 0.85250 0.94934 0.97582 0.89508 1.23468 1.02447 0.96905 0.95267 1.22793 0.99622 0.97805 0.92848 0.88810 1.22623 0.91185 1.00000 0.86672 1.47859 1.28620 1.21468 1.09963 1.24427 1.04406 1.05363 0.84461 1.24222 1.00646 0.96244 1.02010 1.75102 1.21825 1.24683 0.97416 1.78291 1.06061 1.05101 1.20610 1.23277 1.00588 1.00282 0.90789 1.23223 0.95502 1.00272 1.02704 1.24927 1.01979 0.98348 0.82282 1.83797 1.38451 1.46886 1.37924 1.20630 1.01056 1.01543 0.94736 1.20957 0.96686 0.93913 0.96029 0.75507 0.88386 1.23134 1.20966 0.83612 0.83465 0.87858 0.87854 0.74911 0.88525 0.93256 0.83198 0.87228 0.74799 0.77451 0.88503 0.85879 0.79272 0.73052 0.84546 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.47 12.74 -148.98 -1.90 -4.37 16 2 C -0.08 -0.13 2.81 71.23 0.20 0.07 16 3 Si 0.76 0.12 29.78 68.60 2.04 2.16 16 4 C -0.12 -0.70 5.42 -19.85 -0.11 -0.81 16 5 C -0.08 -0.39 8.66 22.26 0.19 -0.19 16 6 C -0.21 -1.29 9.04 22.37 0.20 -1.09 16 7 C 0.12 1.16 6.69 22.51 0.15 1.31 16 8 O -0.32 -3.43 10.12 -92.42 -0.94 -4.36 16 9 C 0.13 0.89 4.74 71.23 0.34 1.22 16 10 C 0.04 0.28 7.00 25.26 0.18 0.46 16 11 C -0.23 -1.17 6.31 -18.99 -0.12 -1.29 16 12 C 0.58 4.55 7.81 86.65 0.68 5.22 16 13 O -0.57 -8.75 14.44 -4.08 -0.06 -8.81 16 14 N -0.69 -0.17 5.26 -443.35 -2.33 -2.51 16 15 C 0.11 -0.12 4.32 45.51 0.20 0.08 16 16 H 0.09 0.33 7.46 -2.38 -0.02 0.32 16 17 C -0.14 0.10 7.43 31.12 0.23 0.33 16 18 C -0.11 0.82 3.64 -10.27 -0.04 0.79 16 19 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 20 C 0.11 -1.07 6.29 86.38 0.54 -0.53 16 21 N -0.28 0.27 3.44 -347.75 -1.20 -0.93 16 22 C -0.04 0.15 11.57 83.49 0.97 1.11 16 23 C -0.07 -0.15 12.05 83.73 1.01 0.86 16 24 N -0.33 -3.63 12.41 -58.25 -0.72 -4.35 16 25 N -0.12 -1.07 12.94 37.02 0.48 -0.59 16 26 C -0.11 1.08 7.39 31.12 0.23 1.31 16 27 C -0.20 0.50 10.60 23.65 0.25 0.75 16 28 C -0.01 0.03 12.03 66.89 0.80 0.84 16 29 O -0.18 -0.61 10.52 4.44 0.05 -0.56 16 30 C -0.16 -1.33 9.99 22.37 0.22 -1.10 16 31 C -0.06 -0.38 9.60 22.25 0.21 -0.16 16 32 H 0.39 -1.57 8.74 -74.06 -0.65 -2.22 16 33 H 0.10 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H -0.30 -2.50 7.11 99.48 0.71 -1.79 16 35 H -0.28 -1.02 7.11 99.48 0.71 -0.31 16 36 H 0.15 0.07 4.87 -2.91 -0.01 0.05 16 37 H 0.15 0.32 6.30 -2.91 -0.02 0.30 16 38 H 0.10 0.88 6.00 -2.39 -0.01 0.86 16 39 H 0.10 0.15 7.66 -2.39 -0.02 0.13 16 40 H 0.41 -2.30 7.87 -92.71 -0.73 -3.03 16 41 H 0.10 -0.11 7.90 -2.38 -0.02 -0.13 16 42 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.15 -2.58 8.07 -2.39 -0.02 -2.60 16 44 H 0.11 -1.10 7.84 -2.38 -0.02 -1.12 16 45 H 0.24 -3.42 8.06 -2.91 -0.02 -3.45 16 46 H 0.21 -0.84 8.06 -2.91 -0.02 -0.87 16 47 H 0.10 -1.15 8.14 -2.38 -0.02 -1.17 16 48 H 0.12 -1.61 8.10 -2.39 -0.02 -1.63 16 49 H 0.19 -1.83 7.74 -2.91 -0.02 -1.85 16 50 H 0.25 -3.25 8.06 -2.91 -0.02 -3.27 16 51 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 52 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 Total: 0.00 -37.64 440.52 1.43 -36.22 By element: Atomic # 1 Polarization: -20.76 SS G_CDS: -0.34 Total: -21.10 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.34 Total: 9.20 kcal Atomic # 7 Polarization: -4.60 SS G_CDS: -3.77 Total: -8.37 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -2.85 Total: -18.10 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.04 Total: 2.16 kcal Total: -37.64 1.43 -36.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.491 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds