Wall clock time and date at job start Sun Mar 7 2021 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.46935 * 2 1 4 4 C 1.50697 * 109.46911 * 240.00338 * 2 1 3 5 5 C 1.38247 * 119.94430 * 119.99949 * 4 2 1 6 6 C 1.38171 * 120.05316 * 180.02562 * 5 4 2 7 7 C 1.38708 * 119.94535 * 359.97438 * 6 5 4 8 8 O 1.35901 * 120.05202 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00383 * 359.97438 * 8 7 6 10 10 C 1.50695 * 109.47400 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99917 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00305 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00033 * 179.97438 * 12 10 9 14 14 H 1.08992 * 112.90684 * 336.24748 * 13 12 10 15 15 C 1.54049 * 113.61276 * 107.61836 * 13 12 10 16 16 C 1.53781 * 87.08031 * 89.07129 * 15 13 12 17 17 H 1.08999 * 113.61181 * 270.87794 * 16 15 13 18 18 C 1.52991 * 113.61611 * 139.97702 * 16 15 13 19 19 N 1.46508 * 109.47429 * 87.50116 * 18 16 15 20 20 C 1.35313 * 125.86567 * 125.00068 * 19 18 16 21 21 C 1.35354 * 106.17115 * 180.02562 * 20 19 18 22 22 N 1.33777 * 106.49620 * 359.97438 * 21 20 19 23 23 N 1.28636 * 108.88679 * 359.73913 * 22 21 20 24 24 C 1.53781 * 87.08070 * 25.42738 * 16 15 13 25 25 C 1.38754 * 119.89157 * 0.25475 * 7 6 5 26 26 N 1.47999 * 120.02834 * 179.72792 * 25 7 6 27 27 O 1.21805 * 119.99593 * 180.02562 * 26 25 7 28 28 O 1.21798 * 120.00135 * 359.97438 * 26 25 7 29 29 C 1.38121 * 119.93879 * 359.51445 * 25 7 6 30 30 H 0.96706 * 114.00451 * 59.99669 * 1 2 3 31 31 H 1.08996 * 109.47207 * 120.00263 * 2 1 3 32 32 H 1.48500 * 110.00099 * 60.00546 * 3 2 1 33 33 H 1.48504 * 109.99865 * 181.32003 * 3 2 1 34 34 H 1.07995 * 119.97422 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.02462 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47308 * 59.99850 * 9 8 7 37 37 H 1.09001 * 109.46756 * 299.99985 * 9 8 7 38 38 H 0.97002 * 120.00078 * 359.97438 * 12 10 9 39 39 H 1.09005 * 113.62125 * 334.52173 * 15 13 12 40 40 H 1.09003 * 113.61268 * 203.61961 * 15 13 12 41 41 H 1.08997 * 109.47550 * 207.50008 * 18 16 15 42 42 H 1.09002 * 109.47334 * 327.50277 * 18 16 15 43 43 H 1.07996 * 126.91221 * 359.97438 * 20 19 18 44 44 H 1.08001 * 126.74859 * 180.02562 * 21 20 19 45 45 H 1.09002 * 113.61445 * 89.11830 * 24 16 15 46 46 H 1.09002 * 113.61408 * 219.93560 * 24 16 15 47 47 H 1.08005 * 119.96884 * 180.22772 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7260 -0.0373 -2.1397 6 6 3.1873 -0.6863 -3.2690 7 6 2.8529 -2.0142 -3.4897 8 8 3.3050 -2.6545 -4.5999 9 6 4.1201 -1.8988 -5.4980 10 6 4.5236 -2.7670 -6.6617 11 8 4.1504 -3.9197 -6.7163 12 7 5.3001 -2.2630 -7.6411 13 6 5.6929 -3.1073 -8.7722 14 1 5.6679 -4.1711 -8.5362 15 6 4.9773 -2.7480 -10.0882 16 6 6.1283 -1.7632 -10.3535 17 1 5.9548 -0.7683 -9.9435 18 6 6.5862 -1.7344 -11.8130 19 7 5.7758 -0.7692 -12.5601 20 6 6.2497 0.2672 -13.2897 21 6 5.1653 0.8932 -13.8038 22 7 4.0954 0.2176 -13.3698 23 7 4.4912 -0.7650 -12.6401 24 6 6.9965 -2.6577 -9.4530 25 6 2.0512 -2.6861 -2.5780 26 7 1.6875 -4.1013 -2.8135 27 8 0.9833 -4.6904 -2.0131 28 8 2.0916 -4.6765 -3.8082 29 6 1.5965 -2.0343 -1.4483 30 1 -0.3934 0.4418 -0.7650 31 1 1.7923 -0.5139 0.8899 32 1 1.5615 2.4679 1.2085 33 1 3.5345 1.7703 -0.0321 34 1 2.9857 0.9967 -1.9677 35 1 3.8078 -0.1599 -3.9792 36 1 5.0121 -1.5530 -4.9756 37 1 3.5575 -1.0399 -5.8639 38 1 5.5990 -1.3412 -7.5973 39 1 4.0123 -2.2626 -9.9422 40 1 4.9344 -3.5717 -10.8008 41 1 7.6349 -1.4411 -11.8591 42 1 6.4665 -2.7254 -12.2510 43 1 7.2847 0.5404 -13.4323 44 1 5.1642 1.7659 -14.4401 45 1 7.5057 -3.4567 -9.9919 46 1 7.6627 -2.0995 -8.7951 47 1 0.9755 -2.5579 -0.7365 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567714_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:55 Heat of formation + Delta-G solvation = 71.566844 kcal Electronic energy + Delta-G solvation = -35131.167105 eV Core-core repulsion = 30095.885645 eV Total energy + Delta-G solvation = -5035.281460 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.20346 -43.03278 -41.86902 -41.32190 -40.08711 -39.16258 -37.54493 -37.13066 -35.89383 -34.34614 -33.51004 -32.40154 -31.98669 -30.54643 -29.27207 -27.60784 -27.01563 -26.74898 -25.07855 -24.09625 -23.58564 -22.85847 -22.45123 -22.16654 -20.69740 -20.45640 -19.46311 -19.23123 -18.89231 -18.43442 -18.35663 -18.25371 -17.71567 -17.50674 -17.24268 -17.04311 -16.54800 -16.34086 -16.13718 -15.98784 -15.79711 -15.65658 -15.42539 -15.26658 -15.03447 -14.92233 -14.27216 -14.14441 -14.02898 -13.90868 -13.72445 -13.32352 -13.28951 -12.74999 -12.61421 -12.52755 -12.42433 -12.20519 -12.13385 -12.00837 -11.86203 -11.85295 -11.74005 -11.56608 -11.07486 -11.05240 -10.95181 -10.77901 -10.36266 -10.30885 -9.92551 -5.31641 -1.14594 -0.39993 0.36972 0.52049 0.61194 0.98072 1.03121 1.27761 1.33189 1.34531 1.64914 1.74040 1.91833 2.10426 2.96726 2.97091 2.99555 3.11645 3.18074 3.22782 3.29209 3.33102 3.40214 3.49398 3.50950 3.53679 3.61827 3.69286 3.75507 3.80181 4.03924 4.08530 4.12342 4.14025 4.25895 4.28884 4.34822 4.41031 4.43897 4.54706 4.62136 4.65799 4.72405 4.82189 4.90662 4.91228 5.18927 5.28238 5.42218 5.55535 5.68836 6.14737 6.31914 6.92984 6.94991 7.56022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.066 4.066 3 Si 0.692 3.308 4 C -0.157 4.157 5 C -0.025 4.025 6 C -0.209 4.209 7 C 0.200 3.800 8 O -0.253 6.253 9 C 0.031 3.969 10 C 0.517 3.483 11 O -0.491 6.491 12 N -0.712 5.712 13 C 0.122 3.878 14 H 0.112 0.888 15 C -0.138 4.138 16 C -0.126 4.126 17 H 0.098 0.902 18 C 0.123 3.877 19 N -0.291 5.291 20 C -0.054 4.054 21 C -0.051 4.051 22 N -0.273 5.273 23 N -0.078 5.078 24 C -0.133 4.133 25 C -0.075 4.075 26 N 0.028 4.972 27 O -0.176 6.176 28 O -0.118 6.118 29 C 0.009 3.991 30 H 0.381 0.619 31 H 0.121 0.879 32 H -0.248 1.248 33 H -0.254 1.254 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.401 0.599 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.190 0.810 44 H 0.190 0.810 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 10.070 -2.264 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.593 3.407 4 C -0.159 4.159 5 C -0.043 4.043 6 C -0.228 4.228 7 C 0.150 3.850 8 O -0.162 6.162 9 C -0.047 4.047 10 C 0.301 3.699 11 O -0.362 6.362 12 N -0.366 5.366 13 C 0.016 3.984 14 H 0.130 0.870 15 C -0.177 4.177 16 C -0.145 4.145 17 H 0.116 0.884 18 C 0.002 3.998 19 N -0.085 5.085 20 C -0.205 4.205 21 C -0.209 4.209 22 N -0.139 5.139 23 N -0.058 5.058 24 C -0.172 4.172 25 C -0.159 4.159 26 N 0.548 4.452 27 O -0.385 6.385 28 O -0.342 6.342 29 C -0.009 4.009 30 H 0.229 0.771 31 H 0.138 0.862 32 H -0.173 1.173 33 H -0.179 1.179 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.207 0.793 44 H 0.207 0.793 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.290 9.228 -0.770 12.429 hybrid contribution 1.499 0.354 -0.338 1.577 sum 9.789 9.582 -1.109 13.743 Atomic orbital electron populations 1.86562 1.16557 1.81611 1.49350 1.25095 0.85716 1.10244 0.96561 0.94889 0.80656 0.77016 0.88108 1.20322 1.02195 0.93973 0.99395 1.21266 0.91889 0.99808 0.91318 1.21266 1.07165 0.92655 1.01761 1.18686 0.89932 0.90806 0.85593 1.86502 1.62919 1.37464 1.29359 1.22709 0.96420 0.94906 0.90696 1.19802 0.79152 0.88157 0.82837 1.90877 1.51697 1.17056 1.76613 1.45421 1.53007 1.15639 1.22490 1.21888 0.94809 0.96590 0.85067 0.86988 1.23537 0.98384 0.98911 0.96834 1.22947 0.98636 1.00194 0.92717 0.88410 1.22239 0.94136 0.92195 0.91267 1.47552 1.06534 1.21195 1.33196 1.23745 1.02442 0.93030 1.01255 1.23694 0.88309 1.03634 1.05217 1.75185 1.26642 1.02557 1.09534 1.78361 0.92353 1.17628 1.17504 1.23347 0.96226 0.99790 0.97852 1.20587 1.10407 0.84173 1.00757 1.43337 0.99219 1.02258 1.00354 1.94560 1.34999 1.66684 1.42275 1.94698 1.54886 1.67488 1.17084 1.20843 0.93492 0.93555 0.93056 0.77102 0.86155 1.17261 1.17938 0.83412 0.82633 0.88033 0.87934 0.76429 0.90115 0.88371 0.87290 0.87808 0.79296 0.79337 0.87723 0.90023 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.87 12.77 -35.23 -0.45 0.42 16 2 C -0.07 0.17 2.82 36.00 0.10 0.27 16 3 Si 0.69 -2.66 29.78 -169.99 -5.06 -7.72 16 4 C -0.16 0.34 5.39 -104.60 -0.56 -0.22 16 5 C -0.03 0.10 8.66 -39.60 -0.34 -0.24 16 6 C -0.21 0.73 9.04 -39.43 -0.36 0.37 16 7 C 0.20 0.11 6.67 -39.22 -0.26 -0.15 16 8 O -0.25 -0.50 7.68 -49.78 -0.38 -0.88 16 9 C 0.03 -0.09 5.22 36.00 0.19 0.10 16 10 C 0.52 0.02 7.91 -10.99 -0.09 -0.07 16 11 O -0.49 -2.80 16.10 -14.35 -0.23 -3.03 16 12 N -0.71 2.39 5.26 -52.88 -0.28 2.11 16 13 C 0.12 -0.35 4.34 -66.97 -0.29 -0.64 16 14 H 0.11 -0.09 7.47 -51.93 -0.39 -0.47 16 15 C -0.14 0.34 7.44 -25.78 -0.19 0.15 16 16 C -0.13 0.60 3.64 -89.81 -0.33 0.27 16 17 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 18 C 0.12 -0.58 6.29 -4.04 -0.03 -0.60 16 19 N -0.29 0.27 3.44 -61.26 -0.21 0.06 16 20 C -0.05 0.10 11.57 -17.04 -0.20 -0.09 16 21 C -0.05 -0.02 12.05 -17.73 -0.21 -0.23 16 22 N -0.27 -1.13 12.41 30.24 0.38 -0.75 16 23 N -0.08 -0.23 12.94 60.35 0.78 0.55 16 24 C -0.13 0.77 7.38 -25.92 -0.19 0.58 16 25 C -0.07 -0.20 6.87 -79.81 -0.55 -0.75 16 26 N 0.03 0.18 4.45 34.03 0.15 0.34 16 27 O -0.18 -1.29 18.45 -29.46 -0.54 -1.83 16 28 O -0.12 -1.01 17.24 -36.49 -0.63 -1.64 16 29 C 0.01 0.00 9.12 -39.60 -0.36 -0.36 16 30 H 0.38 -2.12 8.70 45.56 0.40 -1.73 16 31 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H -0.25 0.01 7.11 56.52 0.40 0.41 16 33 H -0.25 0.52 7.11 56.52 0.40 0.93 16 34 H 0.15 -0.99 4.87 -52.49 -0.26 -1.24 16 35 H 0.16 -1.10 6.30 -52.48 -0.33 -1.44 16 36 H 0.10 -0.63 7.66 -51.93 -0.40 -1.03 16 37 H 0.10 -0.61 7.66 -51.93 -0.40 -1.01 16 38 H 0.40 -2.65 8.70 -40.82 -0.36 -3.00 16 39 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 40 H 0.10 -0.24 7.90 -51.93 -0.41 -0.65 16 41 H 0.11 -0.81 8.07 -51.93 -0.42 -1.23 16 42 H 0.10 -0.53 7.84 -51.93 -0.41 -0.94 16 43 H 0.19 -1.12 8.06 -52.49 -0.42 -1.54 16 44 H 0.19 -0.47 8.06 -52.49 -0.42 -0.90 16 45 H 0.10 -0.70 8.10 -51.93 -0.42 -1.12 16 46 H 0.08 -0.53 8.14 -51.93 -0.42 -0.95 16 47 H 0.16 0.09 7.61 -52.48 -0.40 -0.31 16 LS Contribution 408.53 15.07 6.16 6.16 Total: 0.00 -16.52 408.53 -9.50 -26.02 By element: Atomic # 1 Polarization: -12.67 SS G_CDS: -5.51 Total: -18.18 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.67 Total: -1.63 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: 0.82 Total: 2.30 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -2.24 Total: -6.96 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: -5.06 Total: -7.72 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -16.52 -9.50 -26.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.585 kcal (2) G-P(sol) polarization free energy of solvation -16.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds