Wall clock time and date at job start Sun Mar 7 2021 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86297 * 109.47282 * 2 1 4 4 C 1.50701 * 109.47444 * 120.00660 * 2 1 3 5 5 C 1.38244 * 119.97024 * 245.02051 * 4 2 1 6 6 C 1.38293 * 120.11243 * 179.97438 * 5 4 2 7 7 C 1.38126 * 120.05244 * 359.68366 * 6 5 4 8 8 C 1.38753 * 119.94449 * 0.59316 * 7 6 5 9 9 O 1.35904 * 120.05582 * 179.70317 * 8 7 6 10 10 C 1.42897 * 116.99621 * 359.72387 * 9 8 7 11 11 C 1.50698 * 109.46726 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00445 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00045 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00076 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.85363 * 23.80270 * 14 13 11 16 16 C 1.53780 * 113.61615 * 155.00346 * 14 13 11 17 17 C 1.53782 * 87.08158 * 89.11617 * 16 14 13 18 18 H 1.08997 * 113.61302 * 270.79655 * 17 16 14 19 19 C 1.52999 * 113.61350 * 139.98492 * 17 16 14 20 20 N 1.46502 * 109.47056 * 176.53073 * 19 17 16 21 21 C 1.35315 * 125.87191 * 125.00095 * 20 19 17 22 22 C 1.35344 * 106.17731 * 179.73450 * 21 20 19 23 23 N 1.33776 * 106.49718 * 359.97438 * 22 21 20 24 24 N 1.28633 * 108.88517 * 359.97438 * 23 22 21 25 25 C 1.53772 * 87.17261 * 25.39155 * 17 16 14 26 26 C 1.38160 * 119.97430 * 64.99500 * 4 2 1 27 27 H 0.96706 * 113.99788 * 299.99693 * 1 2 3 28 28 H 1.09006 * 109.47228 * 240.00145 * 2 1 3 29 29 H 1.48493 * 110.00037 * 300.00450 * 3 2 1 30 30 H 1.48510 * 109.99643 * 61.32341 * 3 2 1 31 31 H 1.08001 * 119.94615 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.97277 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.02480 * 180.31892 * 7 6 5 34 34 H 1.09001 * 109.47214 * 60.00399 * 10 9 8 35 35 H 1.09004 * 109.47295 * 299.99896 * 10 9 8 36 36 H 0.96999 * 119.99836 * 0.02562 * 13 11 10 37 37 H 1.09000 * 113.61547 * 334.56974 * 16 14 13 38 38 H 1.09003 * 113.61640 * 203.66305 * 16 14 13 39 39 H 1.09004 * 109.47423 * 56.53031 * 19 17 16 40 40 H 1.09002 * 109.47147 * 296.52962 * 19 17 16 41 41 H 1.07998 * 126.90914 * 359.71348 * 21 20 19 42 42 H 1.08000 * 126.75529 * 179.97438 * 22 21 20 43 43 H 1.09003 * 113.61404 * 89.15886 * 25 17 16 44 44 H 1.08997 * 113.61534 * 220.05938 * 25 17 16 45 45 H 1.07998 * 120.02856 * 0.04709 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6384 -0.0118 2.1911 6 6 3.1004 -0.6608 3.3215 7 6 2.8506 -2.0079 3.4964 8 6 2.1461 -2.7128 2.5309 9 8 1.9043 -4.0397 2.6978 10 6 2.4098 -4.6464 3.8887 11 6 2.0472 -6.1090 3.9002 12 8 1.4181 -6.5851 2.9790 13 7 2.4227 -6.8883 4.9337 14 6 2.0706 -8.3103 4.9446 15 1 1.8920 -8.7099 3.9463 16 6 3.0194 -9.1734 5.7929 17 6 2.0932 -8.8803 6.9850 18 1 2.3623 -7.9790 7.5357 19 6 1.8668 -10.0880 7.8967 20 7 1.0437 -9.6886 9.0409 21 6 -0.1177 -10.2684 9.4231 22 6 -0.5328 -9.5937 10.5205 23 7 0.3832 -8.6469 10.7533 24 7 1.3046 -8.7302 9.8596 25 6 0.9681 -8.6630 5.9596 26 6 1.6845 -2.0596 1.3975 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5614 2.4679 -1.2084 30 1 1.5879 2.4585 1.2244 31 1 2.8303 1.0428 2.0586 32 1 3.6528 -0.1128 4.0704 33 1 3.2071 -2.5132 4.3819 34 1 1.9729 -4.1573 4.7594 35 1 3.4943 -4.5403 3.9184 36 1 2.9261 -6.5077 5.6703 37 1 4.0174 -8.7485 5.9006 38 1 3.0345 -10.2231 5.4996 39 1 2.8277 -10.4599 8.2525 40 1 1.3571 -10.8737 7.3390 41 1 -0.6137 -11.1017 8.9478 42 1 -1.4274 -9.7825 11.0952 43 1 0.4213 -9.5729 5.7119 44 1 0.3124 -7.8266 6.2016 45 1 1.1325 -2.6051 0.6466 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567714_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:05:06 Heat of formation + Delta-G solvation = 59.313195 kcal Electronic energy + Delta-G solvation = -28494.636782 eV Core-core repulsion = 24289.840399 eV Total energy + Delta-G solvation = -4204.796383 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.16042 -41.72793 -41.09237 -39.78001 -38.87757 -37.36409 -35.80650 -34.28800 -32.52274 -31.94788 -31.71040 -30.02296 -28.81111 -26.84823 -26.78601 -24.83572 -23.71657 -23.60533 -22.88325 -22.30698 -21.72567 -20.31016 -19.38959 -18.81363 -18.38864 -17.75452 -17.62625 -17.44193 -17.28264 -17.04584 -16.70616 -16.24640 -16.02347 -15.76468 -15.71748 -15.44690 -15.15281 -14.99326 -14.81069 -14.69103 -14.17092 -14.06397 -14.01884 -13.61387 -13.44665 -13.04030 -12.98865 -12.73269 -12.63758 -12.32641 -12.15700 -12.02459 -11.87959 -11.74831 -11.61562 -11.51645 -11.11488 -10.88209 -10.68115 -10.32409 -10.22904 -9.97374 -9.32304 -4.91894 0.17649 0.36185 0.69622 1.25536 1.33000 1.42944 1.52177 1.60451 1.62795 1.95471 2.52435 2.63438 3.32340 3.37991 3.38764 3.43737 3.52644 3.64024 3.68398 3.73629 3.80726 3.95035 4.00723 4.03479 4.09478 4.14445 4.21950 4.33200 4.34258 4.35809 4.41301 4.51654 4.61093 4.63486 4.71139 4.73918 4.79269 4.93706 4.95550 5.01726 5.09924 5.21398 5.27788 5.34270 5.42113 5.47231 5.66413 5.72376 6.21368 6.37900 6.44488 7.02439 7.54308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.095 4.095 3 Si 0.786 3.214 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.112 3.888 9 O -0.322 6.322 10 C 0.037 3.963 11 C 0.515 3.485 12 O -0.570 6.570 13 N -0.695 5.695 14 C 0.110 3.890 15 H 0.090 0.910 16 C -0.112 4.112 17 C -0.118 4.118 18 H 0.094 0.906 19 C 0.114 3.886 20 N -0.282 5.282 21 C -0.037 4.037 22 C -0.074 4.074 23 N -0.322 5.322 24 N -0.122 5.122 25 C -0.148 4.148 26 C -0.148 4.148 27 H 0.386 0.614 28 H 0.119 0.881 29 H -0.305 1.305 30 H -0.276 1.276 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.419 0.581 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.232 0.768 42 H 0.207 0.793 43 H 0.110 0.890 44 H 0.048 0.952 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 -3.498 2.928 7.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.202 4.202 3 Si 0.690 3.310 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.221 4.221 8 C 0.068 3.932 9 O -0.236 6.236 10 C -0.040 4.040 11 C 0.302 3.698 12 O -0.448 6.448 13 N -0.349 5.349 14 C 0.005 3.995 15 H 0.108 0.892 16 C -0.151 4.151 17 C -0.137 4.137 18 H 0.112 0.888 19 C -0.005 4.005 20 N -0.077 5.077 21 C -0.188 4.188 22 C -0.231 4.231 23 N -0.187 5.187 24 N -0.101 5.101 25 C -0.186 4.186 26 C -0.167 4.167 27 H 0.235 0.765 28 H 0.137 0.863 29 H -0.233 1.233 30 H -0.202 1.202 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.257 0.743 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.248 0.752 42 H 0.224 0.776 43 H 0.128 0.872 44 H 0.067 0.933 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.678 -2.343 1.956 7.342 hybrid contribution -2.028 -0.927 0.520 2.290 sum 4.650 -3.270 2.476 6.200 Atomic orbital electron populations 1.86585 1.18659 1.80573 1.50100 1.25472 0.83457 1.12909 0.98400 0.93840 0.89983 0.70707 0.76448 1.20125 0.98130 0.92917 0.96958 1.21258 1.00593 1.00861 0.94820 1.21328 0.96834 0.93487 0.97185 1.21628 1.03632 0.96426 1.00399 1.19204 0.96366 0.82284 0.95389 1.86119 1.74690 1.20919 1.41855 1.22713 1.02724 0.90118 0.88482 1.20524 0.78721 0.88563 0.82004 1.90764 1.40793 1.75804 1.37461 1.45401 1.57288 1.09334 1.22884 1.21944 0.97240 0.80457 0.99869 0.89227 1.23291 0.98019 1.02007 0.91748 1.22879 0.98016 0.98277 0.94575 0.88782 1.22635 0.96668 0.98597 0.82587 1.47822 1.17264 1.21112 1.21463 1.24371 0.90056 1.04374 1.00035 1.24192 1.02710 0.96125 1.00115 1.75079 1.02267 1.22319 1.19015 1.78175 1.21771 1.09676 1.00516 1.23610 0.96582 1.02652 0.95797 1.20310 1.04149 0.94601 0.97652 0.76456 0.86280 1.23310 1.20186 0.83437 0.82053 0.82375 0.86260 0.85396 0.74318 0.88789 0.85659 0.86538 0.84013 0.75187 0.77578 0.87213 0.93310 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.19 12.83 -148.98 -1.91 -5.10 16 2 C -0.09 -0.18 2.80 71.24 0.20 0.02 16 3 Si 0.79 -1.33 29.88 68.60 2.05 0.72 16 4 C -0.08 -0.21 5.35 -19.88 -0.11 -0.31 16 5 C -0.16 0.25 8.67 22.28 0.19 0.44 16 6 C -0.07 0.25 10.04 22.26 0.22 0.47 16 7 C -0.20 0.37 9.04 22.37 0.20 0.57 16 8 C 0.11 0.55 6.69 22.51 0.15 0.71 16 9 O -0.32 -2.45 9.67 -73.43 -0.71 -3.16 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.30 16 11 C 0.52 1.60 7.91 87.66 0.69 2.29 16 12 O -0.57 -8.36 16.10 16.00 0.26 -8.10 16 13 N -0.70 3.15 5.26 -439.76 -2.31 0.84 16 14 C 0.11 -0.55 4.33 45.58 0.20 -0.35 16 15 H 0.09 -0.02 7.46 -2.39 -0.02 -0.03 16 16 C -0.11 1.35 7.39 31.12 0.23 1.58 16 17 C -0.12 1.09 3.70 -10.27 -0.04 1.05 16 18 H 0.09 -0.53 7.95 -2.39 -0.02 -0.55 16 19 C 0.11 -1.20 6.28 86.38 0.54 -0.66 16 20 N -0.28 0.50 3.44 -347.73 -1.20 -0.69 16 21 C -0.04 0.15 11.57 83.49 0.97 1.11 16 22 C -0.07 -0.14 12.05 83.73 1.01 0.87 16 23 N -0.32 -3.24 12.41 -58.26 -0.72 -3.97 16 24 N -0.12 -0.86 12.79 37.02 0.47 -0.39 16 25 C -0.15 0.86 7.44 31.18 0.23 1.09 16 26 C -0.15 -1.03 9.62 22.37 0.22 -0.81 16 27 H 0.39 -0.13 8.70 -74.05 -0.64 -0.78 16 28 H 0.12 0.15 7.96 -2.38 -0.02 0.13 16 29 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 30 H -0.28 -0.24 7.01 99.48 0.70 0.46 16 31 H 0.15 -0.85 4.84 -2.91 -0.01 -0.87 16 32 H 0.16 -1.55 8.06 -2.91 -0.02 -1.58 16 33 H 0.16 -1.34 6.30 -2.91 -0.02 -1.36 16 34 H 0.12 -0.89 7.65 -2.39 -0.02 -0.90 16 35 H 0.13 -1.14 7.67 -2.38 -0.02 -1.16 16 36 H 0.42 -4.57 8.70 -92.71 -0.81 -5.38 16 37 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 38 H 0.13 -1.96 8.10 -2.39 -0.02 -1.98 16 39 H 0.12 -1.46 8.14 -2.38 -0.02 -1.48 16 40 H 0.14 -2.40 7.80 -2.39 -0.02 -2.42 16 41 H 0.23 -3.13 8.06 -2.91 -0.02 -3.16 16 42 H 0.21 -0.78 8.06 -2.91 -0.02 -0.81 16 43 H 0.11 -0.95 7.92 -2.39 -0.02 -0.97 16 44 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 Total: 0.00 -36.51 382.29 0.83 -35.68 By element: Atomic # 1 Polarization: -23.80 SS G_CDS: -0.38 Total: -24.18 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.28 Total: 8.36 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -3.76 Total: -4.21 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -2.36 Total: -16.37 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.05 Total: 0.72 kcal Total: -36.51 0.83 -35.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567714_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.992 kcal (2) G-P(sol) polarization free energy of solvation -36.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds