Wall clock time and date at job start Sun Mar 7 2021 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37867 * 126.45755 * 2 1 4 4 C 1.46685 * 126.23276 * 359.97438 * 3 2 1 5 5 O 1.21688 * 119.99901 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99753 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99478 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46903 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.85108 * 43.80374 * 8 7 6 10 10 C 1.53779 * 113.61667 * 174.99753 * 8 7 6 11 11 C 1.53779 * 87.08351 * 139.98085 * 10 8 7 12 12 H 1.09000 * 113.61213 * 89.11568 * 11 10 8 13 13 N 1.46496 * 113.61659 * 219.93610 * 11 10 8 14 14 C 1.35311 * 125.86838 * 84.71241 * 13 11 10 15 15 C 1.35351 * 106.17787 * 179.90609 * 14 13 11 16 16 N 1.33778 * 106.49493 * 0.35650 * 15 14 13 17 17 N 1.28631 * 108.88296 * 359.77198 * 16 15 14 18 18 C 1.53775 * 113.61612 * 272.49568 * 8 7 6 19 19 N 1.37654 * 107.53256 * 179.75202 * 3 2 1 20 20 C 1.35522 * 108.64466 * 0.36283 * 19 3 2 21 21 C 1.50699 * 125.56308 * 179.89129 * 20 19 3 22 22 O 1.42903 * 109.47152 * 119.69799 * 21 20 19 23 23 Si 1.86293 * 109.47431 * 359.69691 * 21 20 19 24 24 C 1.35455 * 108.87606 * 359.63223 * 20 19 3 25 25 H 1.08998 * 109.47227 * 270.00149 * 1 2 3 26 26 H 1.08994 * 109.46863 * 30.00710 * 1 2 3 27 27 H 1.09000 * 109.46760 * 150.00448 * 1 2 3 28 28 H 0.96996 * 120.00253 * 359.97438 * 6 4 3 29 29 H 1.09007 * 109.47171 * 299.99529 * 7 6 4 30 30 H 1.08995 * 109.47208 * 59.99614 * 7 6 4 31 31 H 1.09003 * 113.61555 * 254.53044 * 10 8 7 32 32 H 1.09002 * 113.61163 * 25.34417 * 10 8 7 33 33 H 1.08005 * 126.91073 * 0.02562 * 14 13 11 34 34 H 1.07997 * 126.75498 * 180.12119 * 15 14 13 35 35 H 1.08998 * 113.61512 * 334.56695 * 18 8 7 36 36 H 1.09001 * 113.61732 * 105.46712 * 18 8 7 37 37 H 0.97003 * 125.67324 * 180.23892 * 19 3 2 38 38 H 1.09008 * 109.47393 * 239.69194 * 21 20 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 40 40 H 1.48506 * 109.99973 * 59.99460 * 23 21 20 41 41 H 1.48493 * 110.00375 * 181.31561 * 23 21 20 42 42 H 1.07993 * 126.07210 * 180.19201 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 -0.0005 5 8 0.7027 2.7766 -0.0006 6 7 2.8038 3.4999 -0.0010 7 6 2.3678 4.8985 -0.0009 8 6 3.5932 5.8146 -0.0009 9 1 4.3663 5.4875 -0.6961 10 6 3.2462 7.3077 -0.1237 11 6 4.3564 7.5700 0.9075 12 1 5.3392 7.7230 0.4616 13 7 4.0120 8.5988 1.8919 14 6 3.3109 8.4018 3.0324 15 6 3.2271 9.6099 3.6370 16 7 3.8657 10.4770 2.8433 17 7 4.3192 9.8466 1.8178 18 6 4.1233 6.1343 1.4068 19 7 3.6284 0.6624 0.0057 20 6 3.6218 -0.6928 0.0010 21 6 4.8434 -1.5752 0.0024 22 8 4.8345 -2.3992 1.1699 23 14 6.3753 -0.5151 0.0023 24 6 2.3380 -1.1248 0.0007 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 3.7500 3.2868 -0.0006 29 1 1.7688 5.0925 -0.8908 30 1 1.7694 5.0926 0.8892 31 1 3.4571 7.7255 -1.1081 32 1 2.2473 7.5548 0.2358 33 1 2.9023 7.4680 3.3894 34 1 2.7374 9.8311 4.5738 35 1 3.3648 6.0608 2.1861 36 1 5.0423 5.6047 1.6580 37 1 4.4191 1.2244 0.0103 38 1 4.8375 -2.2054 -0.8870 39 1 5.5937 -2.9943 1.2372 40 1 6.3952 0.3488 1.2101 41 1 7.5869 -1.3732 -0.0283 42 1 2.0137 -2.1549 0.0003 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567720_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:24:21 Heat of formation + Delta-G solvation = 107.491294 kcal Electronic energy + Delta-G solvation = -25846.077955 eV Core-core repulsion = 22024.853153 eV Total energy + Delta-G solvation = -3821.224802 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.26629 -42.60370 -40.77227 -39.80744 -37.84749 -36.01075 -34.18486 -33.60709 -32.02607 -31.70564 -29.36667 -28.34800 -27.00135 -26.70080 -25.10694 -23.62903 -22.52513 -22.26733 -21.51767 -20.83392 -20.22329 -19.50858 -18.68766 -18.57235 -17.37338 -17.13405 -16.80321 -16.52424 -16.36210 -15.97339 -15.80189 -15.36409 -15.17591 -15.09369 -14.85872 -14.29812 -14.00870 -13.99853 -13.67284 -13.64980 -13.54808 -13.53222 -13.22823 -13.05846 -12.82222 -12.56817 -12.54832 -12.06420 -11.86895 -11.77398 -11.70874 -11.12313 -10.95382 -10.60009 -10.38324 -10.25450 -9.80508 -9.16331 -5.08042 0.27883 0.61695 1.12885 1.43642 1.48128 1.54071 1.58017 1.79368 1.94022 2.08804 2.27339 3.03519 3.22399 3.36832 3.48675 3.56486 3.66834 3.72358 3.84346 3.97039 4.13592 4.19057 4.23788 4.28188 4.29602 4.42330 4.43023 4.58025 4.67414 4.72240 4.73133 4.80401 4.83847 4.86240 4.89002 4.95447 5.11927 5.16254 5.23457 5.32865 5.40125 5.65152 5.70172 5.84828 6.28045 6.47427 6.57114 7.09413 7.49667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.093 4.093 3 C -0.060 4.060 4 C 0.590 3.410 5 O -0.561 6.561 6 N -0.715 5.715 7 C 0.133 3.867 8 C -0.099 4.099 9 H 0.137 0.863 10 C -0.132 4.132 11 C 0.101 3.899 12 H 0.146 0.854 13 N -0.274 5.274 14 C -0.038 4.038 15 C -0.068 4.068 16 N -0.320 5.320 17 N -0.128 5.128 18 C -0.131 4.131 19 N -0.519 5.519 20 C 0.067 3.933 21 C -0.064 4.064 22 O -0.554 6.554 23 Si 0.758 3.242 24 C -0.193 4.193 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.411 0.589 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.226 0.774 34 H 0.211 0.789 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.427 0.573 38 H 0.112 0.888 39 H 0.401 0.599 40 H -0.281 1.281 41 H -0.277 1.277 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -6.302 -3.198 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.173 4.173 4 C 0.378 3.622 5 O -0.440 6.440 6 N -0.367 5.367 7 C 0.010 3.990 8 C -0.118 4.118 9 H 0.154 0.846 10 C -0.171 4.171 11 C 0.001 3.999 12 H 0.163 0.837 13 N -0.068 5.068 14 C -0.189 4.189 15 C -0.226 4.226 16 N -0.184 5.184 17 N -0.106 5.106 18 C -0.169 4.169 19 N -0.120 5.120 20 C -0.050 4.050 21 C -0.173 4.173 22 O -0.364 6.364 23 Si 0.660 3.340 24 C -0.217 4.217 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.248 0.752 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.242 0.758 34 H 0.228 0.772 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.269 0.731 38 H 0.129 0.871 39 H 0.252 0.748 40 H -0.208 1.208 41 H -0.202 1.202 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.911 -4.300 -3.532 8.119 hybrid contribution 0.184 -1.722 1.407 2.231 sum 6.095 -6.022 -2.126 8.828 Atomic orbital electron populations 1.20314 0.89342 1.02870 1.02062 1.20226 0.96318 0.91529 1.02149 1.20060 0.83948 0.93254 1.20017 1.17060 0.85625 0.83459 0.76073 1.90836 1.17688 1.83669 1.51802 1.45689 1.09729 1.05958 1.75328 1.21357 0.96463 0.78580 1.02629 1.22545 0.97962 0.93228 0.98087 0.84564 1.23408 0.98195 0.95611 0.99892 1.23819 1.02287 0.84737 0.89079 0.83653 1.47839 1.34138 1.07747 1.17105 1.24159 1.02267 1.03315 0.89175 1.24219 1.04787 0.90005 1.03622 1.75085 1.13398 1.28822 1.01133 1.78246 1.22084 0.90738 1.19569 1.23642 1.04372 0.90884 0.98029 1.41797 1.06959 1.06047 1.57243 1.19735 0.96131 0.82676 1.06489 1.24493 1.02972 0.98220 0.91590 1.86560 1.50670 1.55867 1.43339 0.94776 0.72866 0.81350 0.84974 1.20750 0.91353 0.99085 1.10547 0.91831 0.91503 0.90735 0.75243 0.91356 0.91507 0.88562 0.89532 0.75773 0.77234 0.87919 0.87211 0.73121 0.87071 0.74787 1.20777 1.20245 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 9.83 71.24 0.70 0.22 16 2 C -0.09 -0.50 6.21 -19.56 -0.12 -0.62 16 3 C -0.06 -0.12 7.06 40.35 0.28 0.16 16 4 C 0.59 1.36 7.79 86.45 0.67 2.04 16 5 O -0.56 -5.88 14.80 -4.31 -0.06 -5.94 16 6 N -0.71 5.01 5.55 -467.07 -2.59 2.42 16 7 C 0.13 -1.06 5.51 86.38 0.48 -0.59 16 8 C -0.10 1.38 3.75 -10.27 -0.04 1.34 16 9 H 0.14 -2.49 8.14 -2.39 -0.02 -2.51 16 10 C -0.13 1.26 7.44 31.12 0.23 1.49 16 11 C 0.10 -0.81 4.96 45.52 0.23 -0.59 16 12 H 0.15 -1.43 8.14 -2.39 -0.02 -1.45 16 13 N -0.27 -0.17 3.53 -324.68 -1.15 -1.32 16 14 C -0.04 0.07 10.78 83.49 0.90 0.97 16 15 C -0.07 -0.23 12.05 83.73 1.01 0.78 16 16 N -0.32 -3.83 12.41 -58.25 -0.72 -4.55 16 17 N -0.13 -1.27 13.16 37.02 0.49 -0.78 16 18 C -0.13 1.78 6.98 31.12 0.22 2.00 16 19 N -0.52 2.10 5.47 -171.93 -0.94 1.16 16 20 C 0.07 -0.07 6.15 41.35 0.25 0.18 16 21 C -0.06 0.38 2.97 71.24 0.21 0.59 16 22 O -0.55 1.28 12.85 -148.98 -1.91 -0.63 16 23 Si 0.76 -7.26 30.96 68.60 2.12 -5.14 16 24 C -0.19 -0.63 10.64 22.01 0.23 -0.40 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.56 6.48 -2.39 -0.02 0.55 16 27 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.41 -5.72 7.60 -92.71 -0.70 -6.43 16 29 H 0.07 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.07 -0.38 7.84 -2.39 -0.02 -0.39 16 31 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.09 -0.58 8.10 -2.39 -0.02 -0.60 16 33 H 0.23 -2.42 6.74 -2.91 -0.02 -2.44 16 34 H 0.21 -0.59 8.06 -2.91 -0.02 -0.62 16 35 H 0.10 -1.38 6.09 -2.39 -0.01 -1.39 16 36 H 0.11 -1.81 8.14 -2.39 -0.02 -1.82 16 37 H 0.43 -4.87 5.98 -92.71 -0.55 -5.42 16 38 H 0.11 -1.09 7.96 -2.38 -0.02 -1.11 16 39 H 0.40 -4.28 8.74 -74.06 -0.65 -4.93 16 40 H -0.28 1.16 7.11 99.48 0.71 1.86 16 41 H -0.28 1.24 7.11 99.48 0.71 1.95 16 42 H 0.15 0.33 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -32.18 353.72 -0.29 -32.47 By element: Atomic # 1 Polarization: -24.48 SS G_CDS: -0.78 Total: -25.26 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.26 Total: 7.56 kcal Atomic # 7 Polarization: 1.84 SS G_CDS: -4.92 Total: -3.07 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -1.98 Total: -6.57 kcal Atomic # 14 Polarization: -7.26 SS G_CDS: 2.12 Total: -5.14 kcal Total: -32.18 -0.29 -32.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.962 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds