Wall clock time and date at job start Sun Mar 7 2021 07:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47109 * 2 1 4 4 C 1.50695 * 109.47029 * 120.00179 * 2 1 3 5 5 C 1.38273 * 119.94361 * 65.00352 * 4 2 1 6 6 C 1.38145 * 120.05465 * 180.02562 * 5 4 2 7 7 C 1.38734 * 119.94552 * 359.97438 * 6 5 4 8 8 O 1.35897 * 120.05665 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99793 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46876 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09000 * 112.84729 * 43.80692 * 14 13 12 16 16 C 1.53782 * 113.61653 * 174.99994 * 14 13 12 17 17 C 1.53780 * 87.07872 * 139.98291 * 16 14 13 18 18 H 1.09011 * 113.61353 * 89.11949 * 17 16 14 19 19 N 1.46499 * 113.61584 * 219.93121 * 17 16 14 20 20 C 1.35318 * 125.86463 * 85.00468 * 19 17 16 21 21 C 1.35348 * 106.17319 * 180.02562 * 20 19 17 22 22 N 1.33765 * 106.50187 * 359.97438 * 21 20 19 23 23 N 1.28636 * 108.88301 * 359.73419 * 22 21 20 24 24 C 1.53774 * 87.08411 * 334.56798 * 17 16 14 25 25 C 1.38733 * 119.88395 * 0.27895 * 7 6 5 26 26 C 1.38147 * 119.94799 * 359.42093 * 25 7 6 27 27 H 0.96695 * 113.99887 * 300.00089 * 1 2 3 28 28 H 1.09004 * 109.46831 * 240.00080 * 2 1 3 29 29 H 1.48497 * 109.99707 * 178.67972 * 3 2 1 30 30 H 1.48497 * 110.00012 * 299.99943 * 3 2 1 31 31 H 1.07994 * 119.97341 * 359.97099 * 5 4 2 32 32 H 1.07993 * 120.03046 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47206 * 60.00256 * 9 8 7 34 34 H 1.08994 * 109.47548 * 299.99913 * 9 8 7 35 35 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 36 36 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 37 37 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 38 38 H 1.08997 * 113.61383 * 254.53330 * 16 14 13 39 39 H 1.08997 * 113.61199 * 25.35148 * 16 14 13 40 40 H 1.08000 * 126.91146 * 0.02562 * 20 19 17 41 41 H 1.08007 * 126.74713 * 180.02562 * 21 20 19 42 42 H 1.08998 * 113.61544 * 270.88323 * 24 17 16 43 43 H 1.09004 * 113.61702 * 139.97454 * 24 17 16 44 44 H 1.08009 * 120.02352 * 179.72687 * 25 7 6 45 45 H 1.07996 * 119.97029 * 180.32168 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6840 -2.0606 1.3971 6 6 2.1430 -2.7141 2.5244 7 6 2.8530 -2.0146 3.4894 8 8 3.3059 -2.6552 4.5990 9 6 4.0299 -1.8721 5.5501 10 6 4.4486 -2.7452 6.7049 11 8 4.1563 -3.9222 6.7125 12 7 5.1532 -2.2193 7.7264 13 6 5.5654 -3.0693 8.8462 14 6 6.3448 -2.2320 9.8622 15 1 5.8820 -1.2647 10.0574 16 6 6.7201 -3.0040 11.1382 17 6 8.0781 -2.2849 11.0794 18 1 8.0905 -1.3313 11.6074 19 7 9.2124 -3.1435 11.4292 20 6 9.8730 -3.9680 10.5837 21 6 10.8399 -4.5656 11.3185 22 7 10.7255 -4.0834 12.5610 23 7 9.7558 -3.2388 12.5922 24 6 7.8512 -2.1475 9.5647 25 6 3.0952 -0.6588 3.3223 26 6 2.6395 -0.0113 2.1903 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7702 0.0322 30 1 1.5615 2.4679 -1.2085 31 1 1.1309 -2.6046 0.6458 32 1 1.9499 -3.7687 2.6540 33 1 3.3940 -1.0661 5.9164 34 1 4.9147 -1.4493 5.0744 35 1 5.3873 -1.2780 7.7204 36 1 4.6826 -3.4924 9.3254 37 1 6.1994 -3.8752 8.4763 38 1 6.1191 -2.7318 12.0058 39 1 6.7886 -4.0820 10.9920 40 1 9.6696 -4.1189 9.5339 41 1 11.5623 -5.2889 10.9700 42 1 8.2304 -2.9912 8.9881 43 1 8.1633 -1.1838 9.1620 44 1 3.6439 -0.1111 4.0743 45 1 2.8323 1.0430 2.0573 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567720_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:24:40 Heat of formation + Delta-G solvation = 57.328136 kcal Electronic energy + Delta-G solvation = -28119.749485 eV Core-core repulsion = 23914.867023 eV Total energy + Delta-G solvation = -4204.882461 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.25827 -41.55497 -40.83293 -40.04509 -38.94096 -37.11293 -35.90351 -34.10362 -32.40730 -32.01459 -31.74222 -30.53071 -28.32900 -26.96551 -26.21054 -25.19907 -23.92721 -23.62113 -22.43382 -22.25241 -21.70081 -20.49176 -19.46810 -19.01633 -18.27741 -17.91925 -17.48071 -17.34335 -17.14382 -16.76851 -16.54312 -16.19899 -15.99421 -15.89059 -15.67248 -15.53091 -15.19220 -14.82806 -14.59816 -14.50937 -14.31350 -13.75703 -13.64988 -13.57111 -13.52585 -13.42186 -13.22113 -12.81709 -12.54234 -12.23922 -12.06919 -12.02338 -11.86073 -11.76821 -11.75611 -11.67318 -11.02911 -10.92623 -10.38891 -10.37579 -10.19671 -10.03052 -9.21894 -4.98039 0.28779 0.31924 0.62525 1.35345 1.41620 1.46580 1.54643 1.58781 1.66579 2.00957 2.60299 2.66831 3.05171 3.23275 3.45770 3.56915 3.58069 3.64179 3.68116 3.77319 3.85778 3.96731 3.98527 4.07509 4.12754 4.20020 4.24656 4.29731 4.32395 4.42863 4.44218 4.50390 4.58942 4.67350 4.68665 4.72851 4.80833 4.86801 4.95818 4.98440 5.16716 5.17120 5.24629 5.26451 5.37661 5.51349 5.70687 5.71272 6.28238 6.49216 6.80968 7.15317 7.50454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.075 4.075 3 Si 0.784 3.216 4 C -0.163 4.163 5 C -0.063 4.063 6 C -0.168 4.168 7 C 0.122 3.878 8 O -0.321 6.321 9 C 0.035 3.965 10 C 0.511 3.489 11 O -0.577 6.577 12 N -0.705 5.705 13 C 0.132 3.868 14 C -0.096 4.096 15 H 0.137 0.863 16 C -0.136 4.136 17 C 0.100 3.900 18 H 0.145 0.855 19 N -0.274 5.274 20 C -0.037 4.037 21 C -0.069 4.069 22 N -0.320 5.320 23 N -0.129 5.129 24 C -0.127 4.127 25 C -0.198 4.198 26 C -0.074 4.074 27 H 0.395 0.605 28 H 0.101 0.899 29 H -0.281 1.281 30 H -0.305 1.305 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.424 0.576 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.227 0.773 41 H 0.211 0.789 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.169 0.831 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 9.209 -1.421 9.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.184 4.184 3 Si 0.690 3.310 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.187 4.187 7 C 0.077 3.923 8 O -0.235 6.235 9 C -0.043 4.043 10 C 0.297 3.703 11 O -0.456 6.456 12 N -0.360 5.360 13 C 0.008 3.992 14 C -0.115 4.115 15 H 0.155 0.845 16 C -0.175 4.175 17 C 0.000 4.000 18 H 0.163 0.837 19 N -0.068 5.068 20 C -0.189 4.189 21 C -0.227 4.227 22 N -0.185 5.185 23 N -0.107 5.107 24 C -0.165 4.165 25 C -0.216 4.216 26 C -0.091 4.091 27 H 0.245 0.755 28 H 0.118 0.882 29 H -0.208 1.208 30 H -0.234 1.234 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.244 0.756 41 H 0.228 0.772 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.186 0.814 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.498 8.945 -0.795 8.994 hybrid contribution 0.224 -1.108 -1.201 1.649 sum -0.274 7.838 -1.996 8.093 Atomic orbital electron populations 1.86470 1.17557 1.82242 1.50486 1.25209 0.85117 1.11141 0.96980 0.93803 0.77716 0.74714 0.84796 1.20358 1.02819 0.94854 0.98288 1.20902 0.96860 0.94190 0.96123 1.20610 1.02514 1.00997 0.94560 1.19192 0.94672 0.91980 0.86505 1.86130 1.69248 1.38512 1.29585 1.22792 0.99548 0.93682 0.88271 1.20561 0.77886 0.87872 0.83975 1.90785 1.56146 1.19068 1.79573 1.45599 1.55437 1.14678 1.20273 1.21306 0.98776 0.93152 0.85923 1.22516 0.94552 1.00912 0.93505 0.84469 1.23428 0.93862 1.00519 0.99679 1.23837 0.81460 0.94476 1.00261 0.83693 1.47852 1.23677 1.28734 1.06585 1.24173 0.96640 0.97002 1.01041 1.24225 1.03283 1.05452 0.89754 1.75083 1.12477 1.08661 1.22287 1.78249 1.07725 1.18274 1.06477 1.23625 0.95424 1.06150 0.91345 1.21528 1.06155 0.92624 1.01323 1.21073 0.95440 1.00168 0.92434 0.75525 0.88177 1.20791 1.23388 0.85218 0.85763 0.85298 0.85478 0.73733 0.92107 0.91828 0.88811 0.89761 0.75623 0.77244 0.87906 0.86774 0.81365 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.11 12.83 -148.98 -1.91 -1.80 16 2 C -0.08 0.11 2.80 71.23 0.20 0.31 16 3 Si 0.78 -3.53 29.80 68.60 2.04 -1.49 16 4 C -0.16 0.20 5.35 -19.85 -0.11 0.09 16 5 C -0.06 -0.11 9.68 22.26 0.22 0.10 16 6 C -0.17 -0.58 9.99 22.37 0.22 -0.35 16 7 C 0.12 0.12 6.69 22.51 0.15 0.27 16 8 O -0.32 -0.97 9.67 -73.35 -0.71 -1.68 16 9 C 0.03 -0.26 5.22 71.24 0.37 0.11 16 10 C 0.51 -1.08 7.91 87.66 0.69 -0.39 16 11 O -0.58 -6.25 16.50 16.00 0.26 -5.98 16 12 N -0.70 7.80 5.56 -463.06 -2.57 5.22 16 13 C 0.13 -1.24 5.51 86.38 0.48 -0.76 16 14 C -0.10 1.46 3.75 -10.27 -0.04 1.42 16 15 H 0.14 -2.69 8.14 -2.39 -0.02 -2.71 16 16 C -0.14 1.35 7.44 31.12 0.23 1.58 16 17 C 0.10 -0.88 4.96 45.52 0.23 -0.66 16 18 H 0.15 -1.53 8.14 -2.38 -0.02 -1.55 16 19 N -0.27 0.00 3.53 -324.67 -1.15 -1.15 16 20 C -0.04 0.10 10.78 83.49 0.90 1.00 16 21 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 22 N -0.32 -3.71 12.41 -58.26 -0.72 -4.44 16 23 N -0.13 -1.22 13.17 37.02 0.49 -0.74 16 24 C -0.13 1.94 6.98 31.12 0.22 2.16 16 25 C -0.20 1.08 9.04 22.37 0.20 1.29 16 26 C -0.07 0.38 8.66 22.25 0.19 0.58 16 27 H 0.39 -3.37 8.70 -74.06 -0.64 -4.02 16 28 H 0.10 0.04 7.96 -2.38 -0.02 0.02 16 29 H -0.28 0.18 7.11 99.48 0.71 0.88 16 30 H -0.31 -1.21 7.11 99.48 0.71 -0.51 16 31 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.12 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.13 -1.86 7.65 -2.38 -0.02 -1.88 16 34 H 0.13 -1.80 7.67 -2.39 -0.02 -1.82 16 35 H 0.42 -8.26 8.47 -92.71 -0.79 -9.04 16 36 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.06 -0.41 7.85 -2.39 -0.02 -0.43 16 38 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H 0.08 -0.57 8.10 -2.39 -0.02 -0.59 16 40 H 0.23 -2.68 6.74 -2.91 -0.02 -2.70 16 41 H 0.21 -0.70 8.06 -2.91 -0.02 -0.72 16 42 H 0.10 -1.56 6.09 -2.39 -0.01 -1.57 16 43 H 0.11 -2.13 8.14 -2.38 -0.02 -2.15 16 44 H 0.17 -2.29 6.30 -2.91 -0.02 -2.31 16 45 H 0.16 -1.69 4.90 -2.91 -0.01 -1.70 16 Total: 0.00 -38.45 379.80 0.55 -37.90 By element: Atomic # 1 Polarization: -33.06 SS G_CDS: -0.34 Total: -33.41 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.16 Total: 7.56 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -3.96 Total: -1.10 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -2.36 Total: -9.46 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.04 Total: -1.49 kcal Total: -38.45 0.55 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.226 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds