Wall clock time and date at job start Sun Mar 7 2021 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38271 * 119.94563 * 119.72381 * 4 2 1 6 6 C 1.38146 * 120.05540 * 179.72476 * 5 4 2 7 7 C 1.38728 * 119.94378 * 0.55158 * 6 5 4 8 8 O 1.35895 * 120.05721 * 179.74753 * 7 6 5 9 9 C 1.42904 * 116.99866 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47020 * 179.97438 * 9 8 7 11 11 C 1.36415 * 125.79974 * 89.99763 * 10 9 8 12 12 C 1.47384 * 127.19375 * 359.95511 * 11 10 9 13 13 O 1.21611 * 119.99996 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99925 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99982 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47108 * 179.97438 * 15 14 12 17 17 H 1.08997 * 112.84968 * 43.80790 * 16 15 14 18 18 C 1.53781 * 113.61161 * 174.99576 * 16 15 14 19 19 C 1.53782 * 87.07952 * 139.98449 * 18 16 15 20 20 H 1.08999 * 113.61742 * 89.11998 * 19 18 16 21 21 N 1.46500 * 113.61502 * 219.93731 * 19 18 16 22 22 C 1.35318 * 125.86803 * 84.71786 * 21 19 18 23 23 C 1.35356 * 106.17199 * 179.90665 * 22 21 19 24 24 N 1.33766 * 106.50056 * 0.34590 * 23 22 21 25 25 N 1.28646 * 108.88322 * 359.77931 * 24 23 22 26 26 C 1.53779 * 113.61725 * 272.49623 * 16 15 14 27 27 C 1.47018 * 105.61735 * 179.97438 * 11 10 9 28 28 C 1.34179 * 105.95183 * 359.97438 * 27 11 10 29 29 O 1.33653 * 125.80155 * 269.68986 * 10 9 8 30 30 C 1.38735 * 119.89088 * 359.71936 * 7 6 5 31 31 C 1.38147 * 119.94129 * 0.02562 * 30 7 6 32 32 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 33 33 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 34 34 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 35 35 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 36 36 H 1.08003 * 119.96765 * 359.97438 * 5 4 2 37 37 H 1.08003 * 120.02767 * 180.27535 * 6 5 4 38 38 H 1.08994 * 109.46578 * 299.99532 * 9 8 7 39 39 H 1.08990 * 109.47287 * 60.00031 * 9 8 7 40 40 H 0.97003 * 120.00759 * 0.02562 * 14 12 11 41 41 H 1.08995 * 109.47028 * 300.00011 * 15 14 12 42 42 H 1.09003 * 109.47001 * 60.00087 * 15 14 12 43 43 H 1.08996 * 113.61942 * 254.52983 * 18 16 15 44 44 H 1.09008 * 113.61577 * 25.43957 * 18 16 15 45 45 H 1.07999 * 126.91292 * 0.02562 * 22 21 19 46 46 H 1.08002 * 126.74756 * 180.12306 * 23 22 21 47 47 H 1.08997 * 113.61361 * 334.57098 * 26 16 15 48 48 H 1.08997 * 113.61492 * 105.46989 * 26 16 15 49 49 H 1.07998 * 127.02784 * 180.02562 * 27 11 10 50 50 H 1.08008 * 125.43923 * 180.02562 * 28 27 11 51 51 H 1.07994 * 120.03367 * 180.02562 * 30 7 6 52 52 H 1.07996 * 119.97399 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7214 -0.0355 -2.1428 6 6 3.1879 -0.6861 -3.2687 7 6 2.8534 -2.0142 -3.4894 8 8 3.3068 -2.6549 -4.5988 9 6 4.1232 -1.8996 -5.4961 10 6 4.5291 -2.7687 -6.6584 11 6 3.8406 -2.9103 -7.8276 12 6 2.5733 -2.2566 -8.2000 13 8 2.0307 -1.4948 -7.4228 14 7 2.0163 -2.5022 -9.4024 15 6 0.7568 -1.8520 -9.7729 16 6 0.3463 -2.2984 -11.1776 17 1 0.4700 -3.3699 -11.3342 18 6 -1.0285 -1.7665 -11.6157 19 6 -0.4114 -1.5438 -13.0066 20 1 -0.4943 -2.4088 -13.6646 21 7 -0.8419 -0.2986 -13.6470 22 6 -0.2912 0.9227 -13.4561 23 6 -0.9903 1.7779 -14.2385 24 7 -1.9269 1.0491 -14.8556 25 7 -1.8123 -0.1772 -14.4838 26 6 0.9497 -1.4363 -12.2989 27 6 4.6267 -3.8517 -8.6383 28 6 5.6931 -4.1793 -7.8926 29 8 5.6276 -3.5273 -6.7213 30 6 2.0558 -2.6875 -2.5755 31 6 1.5963 -2.0340 -1.4484 32 1 -0.3934 0.4417 -0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5614 2.4679 1.2086 35 1 3.5344 1.7704 -0.0321 36 1 2.9775 0.9999 -1.9728 37 1 3.8087 -0.1599 -3.9787 38 1 3.5612 -1.0408 -5.8630 39 1 5.0145 -1.5539 -4.9728 40 1 2.4492 -3.1096 -10.0226 41 1 -0.0196 -2.1317 -9.0609 42 1 0.8890 -0.7701 -9.7600 43 1 -1.8137 -2.5224 -11.6024 44 1 -1.3196 -0.8434 -11.1143 45 1 0.5401 1.1657 -12.8110 46 1 -0.8266 2.8405 -14.3412 47 1 1.1994 -0.4230 -11.9843 48 1 1.7615 -1.9256 -12.8371 49 1 4.3940 -4.2065 -9.6314 50 1 6.4804 -4.8565 -8.1892 51 1 1.7944 -3.7215 -2.7448 52 1 0.9751 -2.5574 -0.7368 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567720_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:25:06 Heat of formation + Delta-G solvation = 78.155797 kcal Electronic energy + Delta-G solvation = -37394.815114 eV Core-core repulsion = 32331.937576 eV Total energy + Delta-G solvation = -5062.877539 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -44.24283 -43.69750 -41.30540 -40.90374 -39.93683 -39.22186 -37.18864 -35.90318 -34.30932 -33.82909 -32.84085 -31.99567 -31.98343 -31.38447 -29.53141 -27.75311 -26.96500 -26.19705 -25.55981 -24.17841 -23.77232 -23.60434 -22.47824 -22.32898 -21.98282 -21.17596 -20.37270 -19.51111 -19.23700 -18.62113 -18.23580 -17.39075 -17.35703 -17.21843 -17.13532 -16.93377 -16.72990 -16.47874 -16.27156 -16.12203 -15.95962 -15.80626 -15.70482 -15.39558 -15.12466 -14.71840 -14.58941 -14.46442 -14.34660 -14.20101 -13.85187 -13.63166 -13.61402 -13.52853 -13.50793 -13.26052 -13.08057 -12.79431 -12.53303 -12.25020 -12.10823 -12.07020 -11.85490 -11.75969 -11.75155 -11.69014 -11.14014 -10.94508 -10.94068 -10.42229 -10.35773 -10.16873 -10.07065 -9.80430 -9.24516 -4.99816 -0.01675 0.25606 0.28205 0.64224 1.06006 1.32798 1.45168 1.54301 1.60683 1.62591 1.95648 2.07223 2.15761 2.48451 2.63671 3.05217 3.23693 3.35936 3.48547 3.54312 3.58208 3.65257 3.68541 3.69005 3.75674 3.80052 3.90841 3.94669 3.99317 4.12339 4.21328 4.25292 4.28217 4.30514 4.41321 4.43445 4.47705 4.49668 4.59079 4.61542 4.64964 4.69140 4.75574 4.81879 4.82897 4.86818 4.94152 4.96518 5.12982 5.17985 5.23860 5.26325 5.29640 5.40339 5.46418 5.67474 5.72221 5.91025 6.25124 6.46968 6.77556 7.13855 7.52160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.069 4.069 3 Si 0.774 3.226 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.204 4.204 7 C 0.125 3.875 8 O -0.323 6.323 9 C 0.134 3.866 10 C 0.037 3.963 11 C -0.221 4.221 12 C 0.583 3.417 13 O -0.572 6.572 14 N -0.704 5.704 15 C 0.133 3.867 16 C -0.099 4.099 17 H 0.131 0.869 18 C -0.133 4.133 19 C 0.101 3.899 20 H 0.144 0.856 21 N -0.275 5.275 22 C -0.036 4.036 23 C -0.069 4.069 24 N -0.320 5.320 25 N -0.130 5.130 26 C -0.126 4.126 27 C -0.193 4.193 28 C -0.016 4.016 29 O -0.180 6.180 30 C -0.163 4.163 31 C -0.058 4.058 32 H 0.395 0.605 33 H 0.106 0.894 34 H -0.299 1.299 35 H -0.283 1.283 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.228 0.772 46 H 0.212 0.788 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.196 0.804 50 H 0.249 0.751 51 H 0.133 0.867 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 -2.107 -3.203 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.179 4.179 3 Si 0.680 3.320 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.223 4.223 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.016 4.016 11 C -0.226 4.226 12 C 0.371 3.629 13 O -0.453 6.453 14 N -0.356 5.356 15 C 0.010 3.990 16 C -0.118 4.118 17 H 0.149 0.851 18 C -0.172 4.172 19 C 0.001 3.999 20 H 0.161 0.839 21 N -0.068 5.068 22 C -0.188 4.188 23 C -0.227 4.227 24 N -0.185 5.185 25 N -0.108 5.108 26 C -0.164 4.164 27 C -0.212 4.212 28 C -0.081 4.081 29 O -0.076 6.076 30 C -0.181 4.181 31 C -0.077 4.077 32 H 0.244 0.756 33 H 0.124 0.876 34 H -0.227 1.227 35 H -0.210 1.210 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.244 0.756 46 H 0.228 0.772 47 H 0.124 0.876 48 H 0.129 0.871 49 H 0.213 0.787 50 H 0.265 0.735 51 H 0.150 0.850 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.613 -2.280 -2.367 7.384 hybrid contribution 0.890 -0.339 0.343 1.013 sum 7.503 -2.619 -2.024 8.201 Atomic orbital electron populations 1.86452 1.17399 1.82188 1.50466 1.25119 0.85159 1.10737 0.96906 0.93728 0.77904 0.75551 0.84844 1.20355 1.01971 0.95469 0.98356 1.21024 0.95681 0.99917 0.92746 1.21419 1.05957 0.93761 1.01146 1.19165 0.94611 0.91896 0.86368 1.86049 1.65267 1.40667 1.31726 1.21158 0.95318 0.91370 0.86162 1.22063 0.87100 0.96193 0.96243 1.21398 0.98583 1.05676 0.96938 1.17386 0.83230 0.80402 0.81923 1.90790 1.64222 1.38435 1.51832 1.45590 1.25012 1.48308 1.16693 1.21335 0.84867 0.97563 0.95240 1.22510 0.95151 1.02044 0.92120 0.85102 1.23419 0.98173 1.03034 0.92618 1.23801 0.98736 0.83436 0.93943 0.83865 1.47834 1.20784 1.10055 1.28173 1.24184 1.04681 0.83973 1.05941 1.24231 0.95814 1.03229 0.99392 1.75086 1.22759 0.97771 1.22863 1.78258 1.08957 1.15017 1.08572 1.23614 0.94572 1.02791 0.95465 1.23269 0.95122 1.00014 1.02806 1.24914 1.02295 0.98523 0.82417 1.83795 1.38680 1.47044 1.38098 1.20620 1.01230 1.01389 0.94903 1.20927 0.97033 0.93907 0.95785 0.75562 0.87617 1.22731 1.20993 0.83282 0.83320 0.87143 0.88478 0.74511 0.92062 0.91188 0.88904 0.89410 0.75568 0.77172 0.87631 0.87079 0.78725 0.73463 0.84955 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.92 12.77 -148.98 -1.90 -2.82 16 2 C -0.07 -0.06 2.82 71.24 0.20 0.14 16 3 Si 0.77 -1.06 29.78 68.60 2.04 0.98 16 4 C -0.16 -0.35 5.39 -19.85 -0.11 -0.45 16 5 C -0.08 -0.05 8.66 22.26 0.19 0.14 16 6 C -0.20 -0.50 9.04 22.37 0.20 -0.29 16 7 C 0.12 0.79 6.69 22.51 0.15 0.94 16 8 O -0.32 -2.51 10.12 -92.36 -0.93 -3.45 16 9 C 0.13 0.40 4.74 71.24 0.34 0.74 16 10 C 0.04 0.11 7.00 25.26 0.18 0.28 16 11 C -0.22 -0.06 6.31 -18.99 -0.12 -0.18 16 12 C 0.58 0.97 7.81 86.65 0.68 1.64 16 13 O -0.57 -5.24 14.85 -4.06 -0.06 -5.30 16 14 N -0.70 4.81 5.55 -466.41 -2.59 2.22 16 15 C 0.13 -1.03 5.51 86.38 0.48 -0.56 16 16 C -0.10 1.33 3.75 -10.27 -0.04 1.29 16 17 H 0.13 -2.20 8.14 -2.39 -0.02 -2.22 16 18 C -0.13 1.22 7.44 31.12 0.23 1.45 16 19 C 0.10 -0.82 4.96 45.52 0.23 -0.59 16 20 H 0.14 -1.36 8.14 -2.39 -0.02 -1.38 16 21 N -0.27 -0.06 3.53 -324.66 -1.15 -1.21 16 22 C -0.04 0.10 10.78 83.49 0.90 1.00 16 23 C -0.07 -0.18 12.05 83.73 1.01 0.83 16 24 N -0.32 -3.69 12.41 -58.26 -0.72 -4.41 16 25 N -0.13 -1.25 13.17 37.02 0.49 -0.76 16 26 C -0.13 1.77 6.98 31.12 0.22 1.99 16 27 C -0.19 1.36 10.60 23.65 0.25 1.61 16 28 C -0.02 0.10 12.03 66.89 0.80 0.91 16 29 O -0.18 -0.14 10.52 4.45 0.05 -0.09 16 30 C -0.16 -0.94 9.99 22.37 0.22 -0.72 16 31 C -0.06 -0.23 9.60 22.25 0.21 -0.02 16 32 H 0.39 -2.38 8.70 -74.06 -0.64 -3.03 16 33 H 0.11 0.19 7.96 -2.39 -0.02 0.17 16 34 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 35 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 36 H 0.15 -0.62 4.87 -2.91 -0.01 -0.64 16 37 H 0.15 -0.28 6.30 -2.91 -0.02 -0.30 16 38 H 0.11 0.38 6.01 -2.39 -0.01 0.36 16 39 H 0.10 -0.12 7.66 -2.39 -0.02 -0.14 16 40 H 0.42 -5.53 7.64 -92.71 -0.71 -6.24 16 41 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.07 -0.44 7.84 -2.39 -0.02 -0.46 16 43 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 44 H 0.09 -0.58 8.10 -2.38 -0.02 -0.60 16 45 H 0.23 -2.74 6.74 -2.91 -0.02 -2.76 16 46 H 0.21 -0.78 8.06 -2.91 -0.02 -0.80 16 47 H 0.11 -1.54 6.09 -2.39 -0.01 -1.55 16 48 H 0.11 -1.88 8.14 -2.39 -0.02 -1.90 16 49 H 0.20 -2.93 7.74 -2.91 -0.02 -2.95 16 50 H 0.25 -3.79 8.06 -2.91 -0.02 -3.81 16 51 H 0.13 0.61 8.06 -2.91 -0.02 0.59 16 52 H 0.14 0.31 8.06 -2.91 -0.02 0.29 16 Total: 0.00 -35.47 437.67 1.14 -34.34 By element: Atomic # 1 Polarization: -29.33 SS G_CDS: -0.31 Total: -29.64 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.22 Total: 10.16 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -3.97 Total: -4.16 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -2.85 Total: -11.67 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.04 Total: 0.98 kcal Total: -35.47 1.14 -34.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.491 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds