Wall clock time and date at job start Sun Mar 7 2021 07:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35990 * 117.00101 * 2 1 4 4 C 1.39150 * 120.07304 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07491 * 0.02562 * 4 3 2 6 6 C 1.42904 * 117.00103 * 179.72385 * 5 4 3 7 7 C 1.50705 * 109.46855 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00071 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99937 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00242 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.47171 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.90908 * 43.75361 * 11 10 9 13 13 C 1.53786 * 113.61464 * 174.99989 * 11 10 9 14 14 C 1.53781 * 87.17350 * 140.02626 * 13 11 10 15 15 H 1.09003 * 113.61462 * 89.16045 * 14 13 11 16 16 N 1.46493 * 113.61552 * 219.97837 * 14 13 11 17 17 C 1.35314 * 125.86772 * 84.71688 * 16 14 13 18 18 C 1.35358 * 106.17467 * 179.90632 * 17 16 14 19 19 N 1.33768 * 106.49440 * 0.35095 * 18 17 16 20 20 N 1.28632 * 108.88679 * 359.77606 * 19 18 17 21 21 C 1.53781 * 87.08070 * 334.52830 * 14 13 11 22 22 C 1.38570 * 119.85639 * 179.72893 * 4 3 2 23 23 C 1.38241 * 119.99709 * 0.27958 * 22 4 3 24 24 N 1.47999 * 119.92650 * 180.02562 * 23 22 4 25 25 O 1.21801 * 120.00439 * 359.97438 * 24 23 22 26 26 O 1.21803 * 120.00206 * 179.97438 * 24 23 22 27 27 C 1.38257 * 120.14751 * 359.97438 * 23 22 4 28 28 C 1.50695 * 119.92810 * 180.02562 * 27 23 22 29 29 O 1.42898 * 109.47484 * 74.99997 * 28 27 23 30 30 Si 1.86300 * 109.47135 * 194.99900 * 28 27 23 31 31 C 1.38250 * 120.14522 * 0.02562 * 27 23 22 32 32 H 1.08995 * 109.47243 * 299.99552 * 1 2 3 33 33 H 1.09002 * 109.47181 * 59.99954 * 1 2 3 34 34 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47110 * 60.00142 * 6 5 4 36 36 H 1.09000 * 109.46960 * 299.99537 * 6 5 4 37 37 H 0.97003 * 119.99582 * 359.97438 * 9 7 6 38 38 H 1.09007 * 109.46596 * 59.99839 * 10 9 7 39 39 H 1.08994 * 109.47005 * 300.00149 * 10 9 7 40 40 H 1.09002 * 113.61357 * 25.43543 * 13 11 10 41 41 H 1.09002 * 113.61608 * 254.61705 * 13 11 10 42 42 H 1.07995 * 126.91635 * 0.02562 * 17 16 14 43 43 H 1.07997 * 126.75030 * 180.12417 * 18 17 16 44 44 H 1.09005 * 113.61471 * 139.98321 * 21 14 13 45 45 H 1.08996 * 113.61178 * 270.79663 * 21 14 13 46 46 H 1.08000 * 120.00367 * 180.30126 * 22 4 3 47 47 H 1.09003 * 109.47028 * 314.99951 * 28 27 23 48 48 H 0.96699 * 114.00316 * 59.99948 * 29 28 27 49 49 H 1.48501 * 110.00230 * 179.97438 * 30 28 27 50 50 H 1.48497 * 110.00030 * 301.31843 * 30 28 27 51 51 H 1.07994 * 120.00096 * 180.02562 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2862 0.0005 5 8 4.1795 0.1476 0.0005 6 6 5.6004 0.3006 -0.0050 7 6 6.2519 -1.0584 -0.0048 8 8 5.5669 -2.0592 0.0002 9 7 7.5957 -1.1614 -0.0091 10 6 8.2291 -2.4824 -0.0083 11 6 9.7502 -2.3186 -0.0144 12 1 10.0970 -1.5505 0.6769 13 6 10.5134 -3.6480 0.1088 14 6 11.5032 -3.0879 -0.9264 15 1 12.3291 -2.5309 -0.4840 16 7 11.9473 -4.0789 -1.9096 17 6 11.2963 -4.4137 -3.0476 18 6 12.0546 -5.3581 -3.6520 19 7 13.1144 -5.5578 -2.8607 20 7 13.0212 -4.7848 -1.8368 21 6 10.3542 -2.1964 -1.4262 22 6 4.0604 2.5233 -0.0051 23 6 3.3031 3.6798 -0.0055 24 7 3.9716 5.0001 -0.0122 25 8 5.1878 5.0670 -0.0168 26 8 3.3057 6.0200 -0.0129 27 6 1.9225 3.6057 -0.0007 28 6 1.1018 4.8696 -0.0017 29 8 1.1304 5.4552 -1.3049 30 14 -0.6579 4.4677 0.4599 31 6 1.2932 2.3747 0.0050 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 5.9098 0.8524 0.8825 36 1 5.9033 0.8482 -0.8975 37 1 8.1434 -0.3608 -0.0126 38 1 7.9198 -3.0341 -0.8961 39 1 7.9258 -3.0302 0.8839 40 1 9.9495 -4.5099 -0.2480 41 1 10.9547 -3.8087 1.0924 42 1 10.3609 -4.0076 -3.4032 43 1 11.8434 -5.8554 -4.5871 44 1 10.6666 -1.1837 -1.6815 45 1 9.7477 -2.6608 -2.2037 46 1 5.1387 2.5839 -0.0097 47 1 1.5157 5.5722 0.7216 48 1 0.7762 4.8845 -2.0005 49 1 -1.4776 5.7060 0.4631 50 1 -1.2233 3.4863 -0.5004 51 1 0.2147 2.3196 0.0083 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567720_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:25:10 Heat of formation + Delta-G solvation = 37.533816 kcal Electronic energy + Delta-G solvation = -39690.193747 eV Core-core repulsion = 34179.216693 eV Total energy + Delta-G solvation = -5510.977054 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.161 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -44.26240 -43.37281 -42.10268 -41.13137 -40.27656 -39.51235 -39.21689 -37.71824 -37.23241 -35.92562 -34.11046 -32.69148 -32.56894 -32.01815 -30.68418 -28.96043 -28.31854 -27.89614 -26.96543 -25.86545 -25.16378 -23.84023 -23.62382 -23.18675 -22.29833 -21.83878 -20.77052 -20.53379 -19.83183 -19.53374 -19.02404 -18.70946 -18.61920 -18.21830 -17.75954 -17.58682 -17.42470 -17.35043 -16.94908 -16.87317 -16.49940 -16.33610 -16.19565 -15.99548 -15.73680 -15.61400 -15.22163 -14.99087 -14.77001 -14.55998 -14.45427 -13.87996 -13.76881 -13.65086 -13.53567 -13.46237 -13.24435 -13.06041 -12.82052 -12.69299 -12.55966 -12.47717 -12.46058 -12.35365 -12.23316 -12.11107 -11.87025 -11.76646 -11.70936 -11.69892 -11.08271 -10.94525 -10.64709 -10.47683 -10.37856 -10.21744 -9.48636 -5.00574 -1.34069 -0.43032 0.18592 0.32794 0.62233 1.13349 1.25257 1.41780 1.46064 1.46291 1.58583 1.87762 1.89037 1.93965 2.35626 2.98427 3.03740 3.17362 3.22134 3.27044 3.42149 3.44897 3.49042 3.56386 3.64095 3.67698 3.90672 3.94767 3.97470 3.98338 4.07001 4.10290 4.19341 4.24007 4.25579 4.29090 4.31914 4.38260 4.42521 4.58137 4.60079 4.67299 4.71374 4.72457 4.77193 4.80125 4.85919 4.95157 5.15554 5.23912 5.28700 5.35357 5.58537 5.70671 6.04993 6.40954 6.43099 6.50346 7.10152 7.50233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.307 6.307 3 C 0.168 3.832 4 C 0.103 3.897 5 O -0.291 6.291 6 C 0.025 3.975 7 C 0.515 3.485 8 O -0.569 6.569 9 N -0.706 5.706 10 C 0.133 3.867 11 C -0.097 4.097 12 H 0.136 0.864 13 C -0.134 4.134 14 C 0.099 3.901 15 H 0.144 0.856 16 N -0.274 5.274 17 C -0.037 4.037 18 C -0.069 4.069 19 N -0.320 5.320 20 N -0.129 5.129 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.043 4.043 24 N 0.036 4.964 25 O -0.184 6.184 26 O -0.166 6.166 27 C -0.035 4.035 28 C -0.101 4.101 29 O -0.529 6.529 30 Si 0.773 3.227 31 C -0.173 4.173 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.228 0.772 43 H 0.211 0.789 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.186 0.814 47 H 0.128 0.872 48 H 0.383 0.617 49 H -0.295 1.295 50 H -0.250 1.250 51 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 1.039 2.075 6.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.218 6.218 3 C 0.120 3.880 4 C 0.056 3.944 5 O -0.204 6.204 6 C -0.053 4.053 7 C 0.301 3.699 8 O -0.447 6.447 9 N -0.361 5.361 10 C 0.010 3.990 11 C -0.116 4.116 12 H 0.153 0.847 13 C -0.173 4.173 14 C -0.001 4.001 15 H 0.162 0.838 16 N -0.068 5.068 17 C -0.189 4.189 18 C -0.227 4.227 19 N -0.185 5.185 20 N -0.108 5.108 21 C -0.166 4.166 22 C -0.127 4.127 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.395 6.395 26 O -0.380 6.380 27 C -0.037 4.037 28 C -0.208 4.208 29 O -0.336 6.336 30 Si 0.674 3.326 31 C -0.191 4.191 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.262 0.738 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.244 0.756 43 H 0.228 0.772 44 H 0.130 0.870 45 H 0.122 0.878 46 H 0.203 0.797 47 H 0.146 0.854 48 H 0.232 0.768 49 H -0.223 1.223 50 H -0.175 1.175 51 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.850 -0.535 3.006 6.599 hybrid contribution 0.046 1.059 -1.850 2.132 sum -5.804 0.524 1.156 5.942 Atomic orbital electron populations 1.23740 0.75008 1.06947 1.03705 1.86323 1.24504 1.24680 1.86307 1.18681 0.89300 0.86228 0.93840 1.17928 0.88646 0.85203 1.02641 1.86305 1.18652 1.26760 1.88692 1.22954 0.78672 0.96248 1.07404 1.20289 0.83183 0.90301 0.76129 1.90799 1.64088 1.39882 1.49961 1.45621 1.05002 1.10736 1.74716 1.21316 0.91276 0.84044 1.02402 1.22562 0.92252 0.98648 0.98150 0.84663 1.23421 0.95913 0.98220 0.99788 1.23825 0.98457 0.88647 0.89154 0.83820 1.47844 1.14587 1.27172 1.17238 1.24177 1.03496 1.02003 0.89190 1.24228 0.92980 1.01819 1.03646 1.75082 1.23464 1.18744 1.01216 1.78251 1.06772 1.06148 1.19585 1.23676 0.93772 1.01316 0.97855 1.20916 1.03074 0.88002 1.00736 1.20539 0.92646 0.82020 1.17508 1.43694 1.00812 1.03382 0.97185 1.94500 0.96496 1.94096 1.54454 1.94586 1.64471 1.25369 1.53537 1.20080 0.91074 0.97295 0.95230 1.25755 1.11615 0.93883 0.89588 1.86774 1.85283 1.45065 1.16472 0.94256 0.70294 0.79711 0.88322 1.21209 1.02188 0.88469 1.07282 0.89309 0.90756 0.85937 0.85231 0.85362 0.73825 0.91564 0.91831 0.89590 0.88828 0.75598 0.77213 0.86999 0.87764 0.79664 0.85398 0.76816 1.22263 1.17528 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 0.30 10.28 -79.58 -0.82 -0.52 16 3 C 0.17 -0.36 6.70 22.57 0.15 -0.21 16 4 C 0.10 -0.16 6.70 22.57 0.15 -0.01 16 5 O -0.29 -0.19 9.45 -67.09 -0.63 -0.83 16 6 C 0.02 -0.20 5.22 71.24 0.37 0.18 16 7 C 0.52 -1.53 7.91 87.66 0.69 -0.83 16 8 O -0.57 -5.16 16.50 16.00 0.26 -4.89 16 9 N -0.71 7.83 5.56 -463.07 -2.57 5.26 16 10 C 0.13 -1.30 5.52 86.38 0.48 -0.82 16 11 C -0.10 1.45 3.76 -10.18 -0.04 1.41 16 12 H 0.14 -2.55 8.14 -2.39 -0.02 -2.57 16 13 C -0.13 1.33 7.43 31.12 0.23 1.56 16 14 C 0.10 -0.84 4.96 45.52 0.23 -0.61 16 15 H 0.14 -1.41 8.14 -2.39 -0.02 -1.43 16 16 N -0.27 -0.06 3.53 -324.67 -1.15 -1.21 16 17 C -0.04 0.10 10.78 83.49 0.90 1.00 16 18 C -0.07 -0.20 12.05 83.73 1.01 0.81 16 19 N -0.32 -3.75 12.41 -58.26 -0.72 -4.47 16 20 N -0.13 -1.25 13.16 37.02 0.49 -0.77 16 21 C -0.13 1.89 6.99 31.21 0.22 2.11 16 22 C -0.11 0.33 8.54 22.35 0.19 0.52 16 23 C -0.04 -0.05 6.85 36.38 0.25 0.20 16 24 N 0.04 0.26 4.45 -46.46 -0.21 0.05 16 25 O -0.18 -1.51 18.44 18.88 0.35 -1.16 16 26 O -0.17 -1.79 14.62 25.10 0.37 -1.42 16 27 C -0.03 0.07 5.26 -19.86 -0.10 -0.04 16 28 C -0.10 0.12 1.74 71.23 0.12 0.24 16 29 O -0.53 -1.22 11.80 -129.62 -1.53 -2.75 16 30 Si 0.77 -4.90 30.24 68.60 2.07 -2.82 16 31 C -0.17 0.98 7.65 22.35 0.17 1.15 16 32 H 0.09 -1.23 7.65 -2.39 -0.02 -1.25 16 33 H 0.07 -0.89 7.67 -2.39 -0.02 -0.90 16 34 H 0.12 -1.39 8.14 -2.39 -0.02 -1.41 16 35 H 0.13 -1.82 7.66 -2.39 -0.02 -1.83 16 36 H 0.13 -1.79 7.66 -2.39 -0.02 -1.81 16 37 H 0.42 -7.91 8.47 -92.71 -0.79 -8.70 16 38 H 0.07 -0.48 7.85 -2.38 -0.02 -0.50 16 39 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.09 -0.61 8.10 -2.39 -0.02 -0.63 16 41 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.23 -2.69 6.73 -2.91 -0.02 -2.71 16 43 H 0.21 -0.71 8.06 -2.91 -0.02 -0.73 16 44 H 0.11 -1.97 8.14 -2.38 -0.02 -1.99 16 45 H 0.10 -1.57 6.09 -2.39 -0.01 -1.58 16 46 H 0.19 -1.52 5.85 -2.91 -0.02 -1.53 16 47 H 0.13 0.18 6.07 -2.39 -0.01 0.17 16 48 H 0.38 -2.02 8.70 -74.06 -0.64 -2.67 16 49 H -0.30 -0.67 7.11 99.48 0.71 0.04 16 50 H -0.25 1.83 6.68 99.48 0.66 2.50 16 51 H 0.19 -1.99 3.09 -2.91 -0.01 -2.00 16 Total: 0.00 -42.31 430.62 1.66 -40.65 By element: Atomic # 1 Polarization: -32.50 SS G_CDS: -0.38 Total: -32.89 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.13 Total: 7.76 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -4.16 Total: -1.14 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -2.00 Total: -11.57 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: 2.07 Total: -2.82 kcal Total: -42.31 1.66 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.187 kcal (2) G-P(sol) polarization free energy of solvation -42.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds