Wall clock time and date at job start Sun Mar 7 2021 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.47220 * 2 1 4 4 C 1.50699 * 109.47254 * 240.00000 * 2 1 3 5 5 C 1.38239 * 119.94375 * 120.00342 * 4 2 1 6 6 C 1.38167 * 120.05707 * 180.02562 * 5 4 2 7 7 C 1.38716 * 119.94123 * 359.97300 * 6 5 4 8 8 O 1.35905 * 120.05249 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00157 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47126 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99668 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00231 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47084 * 179.97438 * 13 12 10 15 15 H 1.09000 * 112.90903 * 43.74420 * 14 13 12 16 16 C 1.53784 * 113.61330 * 174.99792 * 14 13 12 17 17 C 1.53787 * 87.07923 * 139.97966 * 16 14 13 18 18 H 1.08998 * 113.61103 * 89.12089 * 17 16 14 19 19 N 1.46499 * 113.61131 * 219.93470 * 17 16 14 20 20 C 1.35311 * 125.86924 * 84.72233 * 19 17 16 21 21 C 1.35354 * 106.17621 * 179.90374 * 20 19 17 22 22 N 1.33768 * 106.49440 * 0.34417 * 21 20 19 23 23 N 1.28636 * 108.88620 * 359.78173 * 22 21 20 24 24 C 1.53778 * 87.08035 * 334.56830 * 17 16 14 25 25 C 1.38748 * 119.88915 * 0.25893 * 7 6 5 26 26 N 1.48004 * 120.02949 * 179.72744 * 25 7 6 27 27 O 1.21801 * 120.00052 * 179.97438 * 26 25 7 28 28 O 1.21803 * 119.99937 * 359.97438 * 26 25 7 29 29 C 1.38121 * 119.94472 * 359.50941 * 25 7 6 30 30 H 0.96705 * 113.99120 * 59.99784 * 1 2 3 31 31 H 1.09005 * 109.46968 * 119.99629 * 2 1 3 32 32 H 1.48488 * 110.00172 * 298.68060 * 3 2 1 33 33 H 1.48502 * 109.99634 * 60.00045 * 3 2 1 34 34 H 1.08007 * 119.97294 * 359.97438 * 5 4 2 35 35 H 1.07997 * 120.03267 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47688 * 59.99345 * 9 8 7 37 37 H 1.09007 * 109.46951 * 299.99637 * 9 8 7 38 38 H 0.97005 * 119.99833 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47092 * 59.99495 * 13 12 10 40 40 H 1.08995 * 109.46661 * 299.99459 * 13 12 10 41 41 H 1.09004 * 113.61451 * 25.43452 * 16 14 13 42 42 H 1.08994 * 113.61477 * 254.52754 * 16 14 13 43 43 H 1.07996 * 126.90923 * 0.02562 * 20 19 17 44 44 H 1.07994 * 126.74935 * 180.12807 * 21 20 19 45 45 H 1.08999 * 113.61111 * 139.98327 * 24 17 16 46 46 H 1.08999 * 113.61280 * 270.79710 * 24 17 16 47 47 H 1.07998 * 119.97728 * 180.23360 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7261 -0.0375 -2.1396 6 6 3.1876 -0.6864 -3.2688 7 6 2.8531 -2.0144 -3.4894 8 8 3.3054 -2.6547 -4.5996 9 6 4.1214 -1.8994 -5.4971 10 6 4.5249 -2.7677 -6.6608 11 8 4.1508 -3.9200 -6.7159 12 7 5.3023 -2.2640 -7.6398 13 6 5.6950 -3.1082 -8.7708 14 6 6.5687 -2.2994 -9.7317 15 1 7.3182 -1.6969 -9.2187 16 6 7.1365 -3.1297 -10.8950 17 6 6.8542 -1.9155 -11.7957 18 1 7.6819 -1.2081 -11.8470 19 7 6.3293 -2.2736 -13.1158 20 6 5.0314 -2.5121 -13.4149 21 6 4.9963 -2.8029 -14.7364 22 7 6.2588 -2.7365 -15.1736 23 7 7.0242 -2.4207 -14.1892 24 6 5.7656 -1.5180 -10.7850 25 6 2.0513 -2.6861 -2.5778 26 7 1.6876 -4.1013 -2.8133 27 8 0.9841 -4.6907 -2.0125 28 8 2.0919 -4.6767 -3.8079 29 6 1.5966 -2.0344 -1.4482 30 1 -0.3932 0.4418 -0.7651 31 1 1.7923 -0.5138 0.8901 32 1 1.5880 2.4586 -1.2241 33 1 1.5615 2.4678 1.2085 34 1 2.9859 0.9967 -1.9675 35 1 3.8081 -0.1601 -3.9790 36 1 5.0134 -1.5543 -4.9742 37 1 3.5596 -1.0399 -5.8631 38 1 5.6018 -1.3424 -7.5955 39 1 4.8029 -3.4529 -9.2939 40 1 6.2565 -3.9677 -8.4048 41 1 6.5353 -4.0050 -11.1411 42 1 8.1970 -3.3589 -10.7910 43 1 4.1922 -2.4757 -12.7362 44 1 4.1216 -3.0447 -15.3217 45 1 5.7194 -0.4462 -10.5921 46 1 4.7893 -1.9515 -11.0017 47 1 0.9756 -2.5579 -0.7364 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567720_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:25:17 Heat of formation + Delta-G solvation = 71.167721 kcal Electronic energy + Delta-G solvation = -34779.871704 eV Core-core repulsion = 29744.572936 eV Total energy + Delta-G solvation = -5035.298768 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.146 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.26043 -43.08013 -41.85441 -41.17433 -40.40283 -39.48908 -37.69826 -37.18185 -36.06174 -34.17719 -33.57814 -32.48007 -32.00851 -30.98172 -28.76255 -27.65007 -27.40291 -26.77872 -25.42096 -24.09560 -23.63849 -22.88286 -22.45463 -21.99083 -20.87853 -20.53445 -19.51039 -19.42206 -19.10667 -18.44930 -18.40825 -18.23851 -17.80832 -17.51545 -17.42564 -17.11911 -16.67402 -16.59959 -16.30934 -16.20362 -15.90365 -15.86236 -15.39321 -15.18728 -14.99535 -14.80871 -14.20153 -14.05238 -14.02176 -13.89452 -13.87482 -13.49455 -13.36624 -12.98360 -12.67977 -12.62690 -12.59577 -12.25307 -12.24945 -12.10944 -12.06540 -11.90808 -11.78784 -11.75226 -11.14204 -11.03062 -11.01672 -10.95026 -10.43405 -10.35202 -9.98626 -5.26995 -1.19222 -0.44885 0.32232 0.47274 0.59476 0.93364 0.98331 1.26813 1.28071 1.28253 1.66375 1.71247 1.86645 2.04749 2.66339 2.81251 2.90940 2.94290 3.06384 3.11421 3.15649 3.16649 3.32291 3.44996 3.48431 3.49053 3.51549 3.62888 3.64958 3.81371 3.98276 4.05997 4.07828 4.11589 4.15406 4.24741 4.28239 4.29028 4.36448 4.36711 4.45135 4.50304 4.61360 4.70222 4.80156 4.86141 5.02698 5.20607 5.35929 5.58184 5.63799 6.06484 6.10746 6.87560 6.88162 7.56910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.073 4.073 3 Si 0.688 3.312 4 C -0.155 4.155 5 C -0.024 4.024 6 C -0.209 4.209 7 C 0.200 3.800 8 O -0.254 6.254 9 C 0.031 3.969 10 C 0.513 3.487 11 O -0.494 6.494 12 N -0.728 5.728 13 C 0.133 3.867 14 C -0.118 4.118 15 H 0.112 0.888 16 C -0.132 4.132 17 C 0.115 3.885 18 H 0.137 0.863 19 N -0.282 5.282 20 C -0.052 4.052 21 C -0.049 4.049 22 N -0.271 5.271 23 N -0.085 5.085 24 C -0.139 4.139 25 C -0.075 4.075 26 N 0.028 4.972 27 O -0.176 6.176 28 O -0.118 6.118 29 C 0.009 3.991 30 H 0.378 0.622 31 H 0.126 0.874 32 H -0.256 1.256 33 H -0.250 1.250 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.189 0.811 44 H 0.191 0.809 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 10.713 3.341 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.182 4.182 3 Si 0.588 3.412 4 C -0.157 4.157 5 C -0.042 4.042 6 C -0.229 4.229 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.048 4.048 10 C 0.296 3.704 11 O -0.365 6.365 12 N -0.383 5.383 13 C 0.010 3.990 14 C -0.137 4.137 15 H 0.130 0.870 16 C -0.171 4.171 17 C 0.014 3.986 18 H 0.155 0.845 19 N -0.076 5.076 20 C -0.203 4.203 21 C -0.206 4.206 22 N -0.137 5.137 23 N -0.064 5.064 24 C -0.178 4.178 25 C -0.159 4.159 26 N 0.548 4.452 27 O -0.385 6.385 28 O -0.342 6.342 29 C -0.010 4.010 30 H 0.226 0.774 31 H 0.144 0.856 32 H -0.181 1.181 33 H -0.175 1.175 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.206 0.794 44 H 0.208 0.792 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.016 10.879 3.311 12.429 hybrid contribution -2.027 0.166 -0.053 2.035 sum 2.989 11.045 3.259 11.897 Atomic orbital electron populations 1.86665 1.17201 1.79827 1.49406 1.25078 0.84366 1.11182 0.97586 0.95188 0.91225 0.73740 0.81077 1.20262 1.02204 0.93873 0.99330 1.21267 0.91746 0.99964 0.91222 1.21261 1.07217 0.92598 1.01777 1.18687 0.89934 0.90799 0.85598 1.86503 1.62889 1.37513 1.29406 1.22717 0.96436 0.94850 0.90749 1.19820 0.79344 0.88167 0.83051 1.90887 1.52088 1.17080 1.76483 1.45737 1.53249 1.16166 1.23172 1.21356 0.98622 0.93256 0.85735 1.22626 0.98541 0.98160 0.94385 0.87029 1.23430 1.03911 0.96939 0.92845 1.23365 0.99548 0.99927 0.75789 0.84517 1.47495 1.05957 1.44225 1.09899 1.23586 0.88761 1.08980 0.98925 1.23693 0.97121 1.06531 0.93279 1.75169 1.01641 1.15625 1.21233 1.78349 1.21110 1.18258 0.88717 1.23606 0.98118 1.02604 0.93431 1.20588 1.10438 0.84165 1.00756 1.43342 0.99215 1.02261 1.00357 1.94562 1.35036 1.66664 1.42229 1.94696 1.54874 1.67492 1.17136 1.20852 0.93483 0.93570 0.93049 0.77419 0.85592 1.18132 1.17470 0.83328 0.82601 0.87908 0.88069 0.76306 0.90599 0.90263 0.88324 0.88791 0.79437 0.79218 0.89002 0.88114 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.62 12.77 -35.23 -0.45 0.17 16 2 C -0.07 0.23 2.82 36.01 0.10 0.33 16 3 Si 0.69 -2.96 29.78 -169.99 -5.06 -8.03 16 4 C -0.16 0.45 5.39 -104.60 -0.56 -0.12 16 5 C -0.02 0.12 8.66 -39.61 -0.34 -0.23 16 6 C -0.21 0.92 9.04 -39.43 -0.36 0.57 16 7 C 0.20 -0.07 6.67 -39.22 -0.26 -0.34 16 8 O -0.25 -0.24 7.68 -49.79 -0.38 -0.62 16 9 C 0.03 -0.13 5.22 36.01 0.19 0.06 16 10 C 0.51 -0.72 7.91 -10.99 -0.09 -0.81 16 11 O -0.49 -2.25 16.50 -14.35 -0.24 -2.49 16 12 N -0.73 3.85 5.56 -60.30 -0.33 3.51 16 13 C 0.13 -0.62 5.51 -4.04 -0.02 -0.64 16 14 C -0.12 0.82 3.75 -89.81 -0.34 0.48 16 15 H 0.11 -0.94 8.14 -51.93 -0.42 -1.36 16 16 C -0.13 0.65 7.44 -25.91 -0.19 0.46 16 17 C 0.12 -0.48 4.96 -67.12 -0.33 -0.81 16 18 H 0.14 -0.67 8.14 -51.93 -0.42 -1.10 16 19 N -0.28 0.04 3.53 -53.97 -0.19 -0.15 16 20 C -0.05 0.06 10.78 -17.05 -0.18 -0.12 16 21 C -0.05 -0.05 12.05 -17.74 -0.21 -0.27 16 22 N -0.27 -1.32 12.41 30.23 0.38 -0.94 16 23 N -0.09 -0.34 13.16 60.35 0.79 0.46 16 24 C -0.14 0.93 6.98 -25.92 -0.18 0.75 16 25 C -0.08 -0.14 6.86 -79.81 -0.55 -0.69 16 26 N 0.03 0.16 4.45 34.03 0.15 0.32 16 27 O -0.18 -1.17 18.45 -29.46 -0.54 -1.72 16 28 O -0.12 -0.92 17.24 -36.49 -0.63 -1.55 16 29 C 0.01 0.00 9.12 -39.60 -0.36 -0.36 16 30 H 0.38 -1.56 8.70 45.56 0.40 -1.17 16 31 H 0.13 -0.48 7.96 -51.93 -0.41 -0.89 16 32 H -0.26 0.73 7.11 56.52 0.40 1.13 16 33 H -0.25 0.09 7.11 56.52 0.40 0.49 16 34 H 0.15 -1.10 4.87 -52.48 -0.26 -1.36 16 35 H 0.16 -1.27 6.30 -52.49 -0.33 -1.60 16 36 H 0.10 -0.77 7.66 -51.93 -0.40 -1.17 16 37 H 0.10 -0.75 7.66 -51.92 -0.40 -1.15 16 38 H 0.40 -3.57 8.47 -40.82 -0.35 -3.91 16 39 H 0.08 -0.26 7.85 -51.93 -0.41 -0.67 16 40 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 41 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 42 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 43 H 0.19 -0.92 6.74 -52.49 -0.35 -1.27 16 44 H 0.19 -0.35 8.06 -52.49 -0.42 -0.77 16 45 H 0.09 -0.71 8.14 -51.93 -0.42 -1.13 16 46 H 0.10 -0.66 6.09 -51.93 -0.32 -0.97 16 47 H 0.16 -0.02 7.61 -52.49 -0.40 -0.42 16 LS Contribution 405.70 15.07 6.11 6.11 Total: 0.00 -16.88 405.70 -9.47 -26.35 By element: Atomic # 1 Polarization: -14.31 SS G_CDS: -5.38 Total: -19.69 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.69 Total: -1.75 kcal Atomic # 7 Polarization: 2.40 SS G_CDS: 0.80 Total: 3.19 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -2.24 Total: -6.20 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: -5.06 Total: -8.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -16.88 -9.47 -26.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.519 kcal (2) G-P(sol) polarization free energy of solvation -16.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds