Wall clock time and date at job start Sun Mar 7 2021 07:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33820 * 122.44852 * 2 1 4 4 C 1.50700 * 124.52288 * 359.95113 * 3 2 1 5 5 O 1.42904 * 109.46980 * 330.00154 * 4 3 2 6 6 Si 1.86303 * 109.47407 * 210.00303 * 4 3 2 7 7 S 1.70622 * 110.95538 * 179.97438 * 3 2 1 8 8 C 1.75836 * 91.56034 * 359.97438 * 7 3 2 9 9 C 1.46581 * 125.45490 * 180.02562 * 8 7 3 10 10 O 1.21702 * 119.99851 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00155 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99964 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47059 * 180.02562 * 12 11 9 14 14 H 1.08999 * 112.84649 * 43.80580 * 13 12 11 15 15 C 1.53778 * 113.61320 * 175.00445 * 13 12 11 16 16 C 1.53789 * 87.08002 * 139.98183 * 15 13 12 17 17 H 1.08995 * 113.61339 * 89.20039 * 16 15 13 18 18 N 1.46504 * 113.61260 * 220.01783 * 16 15 13 19 19 C 1.35307 * 125.86774 * 85.00059 * 18 16 15 20 20 C 1.35350 * 106.17738 * 180.02562 * 19 18 16 21 21 N 1.33771 * 106.49501 * 359.97438 * 20 19 18 22 22 N 1.28634 * 108.88748 * 0.02562 * 21 20 19 23 23 C 1.53783 * 87.08185 * 334.56427 * 16 15 13 24 24 C 1.36643 * 109.08523 * 0.26706 * 8 7 3 25 25 H 1.09001 * 109.46810 * 90.00073 * 1 2 3 26 26 H 1.08995 * 109.46833 * 209.99973 * 1 2 3 27 27 H 1.09000 * 109.47082 * 330.00640 * 1 2 3 28 28 H 1.08994 * 109.47005 * 90.00492 * 4 3 2 29 29 H 0.96698 * 113.99524 * 180.02562 * 5 4 3 30 30 H 1.48504 * 110.00023 * 59.99878 * 6 4 3 31 31 H 1.48494 * 110.00092 * 181.31987 * 6 4 3 32 32 H 0.97000 * 119.99577 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.47023 * 60.01076 * 12 11 9 34 34 H 1.08998 * 109.47814 * 300.00930 * 12 11 9 35 35 H 1.08996 * 113.61733 * 25.43717 * 15 13 12 36 36 H 1.08993 * 113.61426 * 254.52521 * 15 13 12 37 37 H 1.08003 * 126.91448 * 359.97115 * 19 18 16 38 38 H 1.07999 * 126.75574 * 180.02562 * 20 19 18 39 39 H 1.08999 * 113.61045 * 139.97609 * 23 16 15 40 40 H 1.08995 * 113.61269 * 270.88373 * 23 16 15 41 41 H 1.07995 * 123.35081 * 179.73977 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 -0.0011 5 8 0.3758 2.4978 -0.6756 6 14 2.7930 3.6824 -0.8791 7 16 3.8970 0.7893 0.0007 8 6 3.5937 -0.9427 0.0018 9 6 4.6231 -1.9862 0.0033 10 8 4.3002 -3.1596 0.0035 11 7 5.9274 -1.6462 0.0046 12 6 6.9562 -2.6891 0.0067 13 6 8.3413 -2.0391 0.0083 14 1 8.4154 -1.2027 0.7033 15 6 9.4950 -3.0481 0.1333 16 6 10.2506 -2.1923 -0.8972 17 1 10.8486 -1.3980 -0.4507 18 7 10.9960 -2.9810 -1.8814 19 6 10.4938 -3.5014 -3.0249 20 6 11.5188 -4.1490 -3.6266 21 7 12.5841 -3.9947 -2.8323 22 7 12.2413 -3.2982 -1.8066 23 6 8.8749 -1.7225 -1.3988 24 6 2.2447 -1.1600 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.4927 2.8510 1.0263 29 1 -0.0619 3.3591 -0.7148 30 1 2.9960 3.2368 -2.2811 31 1 2.2380 5.0596 -0.8591 32 1 6.1847 -0.7109 0.0048 33 1 6.8467 -3.3093 -0.8831 34 1 6.8445 -3.3080 0.8969 35 1 9.2439 -4.0454 -0.2275 36 1 9.9614 -3.0581 1.1184 37 1 9.4790 -3.4177 -3.3848 38 1 11.4838 -4.6843 -4.5639 39 1 8.8406 -0.6625 -1.6505 40 1 8.4542 -2.3575 -2.1785 41 1 1.8020 -2.1451 -0.0093 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567720_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:26:03 Heat of formation + Delta-G solvation = 98.603727 kcal Electronic energy + Delta-G solvation = -25318.011805 eV Core-core repulsion = 21522.753626 eV Total energy + Delta-G solvation = -3795.258179 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.21002 -41.19882 -40.37816 -39.62574 -37.63035 -35.92591 -34.09103 -32.42082 -31.95706 -30.27997 -29.59537 -27.33257 -26.56688 -25.19966 -24.10474 -23.58376 -22.38001 -21.85886 -20.84838 -20.08312 -19.26063 -18.95888 -18.44442 -17.46643 -17.43203 -17.06894 -16.70862 -16.38751 -16.27863 -15.91686 -15.71920 -15.23740 -14.97064 -14.83370 -14.51603 -14.40889 -14.21420 -13.95214 -13.80636 -13.47812 -13.24193 -13.16698 -12.97955 -12.90002 -12.62114 -12.58022 -12.21754 -12.15054 -12.04277 -12.01179 -11.70093 -11.19484 -10.97936 -10.91573 -10.31974 -10.30495 -9.67444 -9.41622 -5.30559 -0.64564 0.22163 0.64016 0.64701 0.96120 1.30400 1.31414 1.41143 1.70703 1.75446 1.90011 2.14358 2.75046 2.90528 3.01196 3.17043 3.25073 3.51982 3.54741 3.63630 3.78290 3.91144 4.04410 4.06538 4.14083 4.19910 4.22755 4.33364 4.34394 4.37149 4.44850 4.52254 4.56746 4.58309 4.76533 4.85208 4.87453 4.88862 5.02414 5.17520 5.25007 5.38325 5.45366 5.63524 6.18870 6.24142 7.01893 7.61577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.034 4.034 5 O -0.524 6.524 6 Si 0.659 3.341 7 S 0.202 5.798 8 C -0.265 4.265 9 C 0.594 3.406 10 O -0.524 6.524 11 N -0.728 5.728 12 C 0.133 3.867 13 C -0.119 4.119 14 H 0.112 0.888 15 C -0.131 4.131 16 C 0.116 3.884 17 H 0.138 0.862 18 N -0.281 5.281 19 C -0.051 4.051 20 C -0.050 4.050 21 N -0.272 5.272 22 N -0.085 5.085 23 C -0.140 4.140 24 C -0.045 4.045 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.382 0.618 30 H -0.242 1.242 31 H -0.242 1.242 32 H 0.400 0.600 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.189 0.811 38 H 0.190 0.810 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 6.659 2.089 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.313 4.313 4 C -0.145 4.145 5 O -0.332 6.332 6 Si 0.556 3.444 7 S 0.470 5.530 8 C -0.384 4.384 9 C 0.380 3.620 10 O -0.401 6.401 11 N -0.380 5.380 12 C 0.009 3.991 13 C -0.139 4.139 14 H 0.130 0.870 15 C -0.170 4.170 16 C 0.014 3.986 17 H 0.155 0.845 18 N -0.075 5.075 19 C -0.202 4.202 20 C -0.207 4.207 21 N -0.137 5.137 22 N -0.065 5.065 23 C -0.178 4.178 24 C -0.079 4.079 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.231 0.769 30 H -0.166 1.166 31 H -0.165 1.165 32 H 0.234 0.766 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.206 0.794 38 H 0.207 0.793 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.353 6.756 2.188 7.111 hybrid contribution -3.479 -0.056 -0.791 3.569 sum -3.833 6.700 1.398 7.844 Atomic orbital electron populations 1.20518 0.88638 1.02537 1.02822 1.18713 0.98583 0.90544 1.02381 1.23274 0.98285 0.98566 1.11211 1.24032 0.91527 0.97541 1.01397 1.86687 1.31763 1.35572 1.79185 0.95591 0.85986 0.78702 0.84078 1.82548 1.02309 0.98586 1.69598 1.24533 0.97911 0.96725 1.19281 1.16913 0.81503 0.87401 0.76155 1.90875 1.81578 1.18190 1.49475 1.45802 1.05385 1.10290 1.76550 1.21351 0.84317 0.89943 1.03446 1.22643 0.93606 0.99947 0.97663 0.86971 1.23420 0.94634 0.98898 1.00093 1.23387 0.91467 0.94705 0.89061 0.84464 1.47509 1.08378 1.35215 1.16409 1.23589 1.02775 1.03761 0.90078 1.23683 0.89342 1.04836 1.02851 1.75162 1.25675 1.12937 0.99963 1.78346 0.94861 1.14272 1.18987 1.23615 0.92397 1.03852 0.97943 1.20724 0.90947 1.00140 0.96066 0.90956 0.92070 0.90356 0.89428 0.76907 1.16569 1.16537 0.76589 0.90644 0.90304 0.88388 0.88801 0.79432 0.79259 0.88870 0.88115 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 8.70 36.01 0.31 0.29 16 2 C -0.09 -0.09 5.75 -106.45 -0.61 -0.70 16 3 C -0.19 0.04 5.57 -35.86 -0.20 -0.16 16 4 C -0.03 0.07 2.75 36.01 0.10 0.16 16 5 O -0.52 0.70 9.81 -35.23 -0.35 0.35 16 6 Si 0.66 -1.62 31.31 -169.99 -5.32 -6.94 16 7 S 0.20 -0.40 19.79 -107.50 -2.13 -2.53 16 8 C -0.26 -0.19 6.45 -36.80 -0.24 -0.43 16 9 C 0.59 0.90 7.78 -12.89 -0.10 0.80 16 10 O -0.52 -2.83 16.84 5.19 0.09 -2.74 16 11 N -0.73 1.61 5.55 -61.65 -0.34 1.26 16 12 C 0.13 -0.41 5.51 -4.04 -0.02 -0.43 16 13 C -0.12 0.67 3.75 -89.80 -0.34 0.33 16 14 H 0.11 -0.78 8.14 -51.93 -0.42 -1.20 16 15 C -0.13 0.55 7.44 -25.92 -0.19 0.36 16 16 C 0.12 -0.39 4.96 -67.11 -0.33 -0.72 16 17 H 0.14 -0.58 8.14 -51.93 -0.42 -1.00 16 18 N -0.28 -0.12 3.53 -53.97 -0.19 -0.31 16 19 C -0.05 0.03 10.77 -17.05 -0.18 -0.15 16 20 C -0.05 -0.08 12.05 -17.74 -0.21 -0.29 16 21 N -0.27 -1.42 12.41 30.23 0.38 -1.05 16 22 N -0.09 -0.37 13.17 60.35 0.79 0.42 16 23 C -0.14 0.76 6.98 -25.91 -0.18 0.58 16 24 C -0.05 -0.07 9.80 -40.44 -0.40 -0.46 16 25 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.08 0.00 6.42 -51.93 -0.33 -0.33 16 28 H 0.09 -0.32 7.96 -51.93 -0.41 -0.74 16 29 H 0.38 -1.98 8.74 45.56 0.40 -1.58 16 30 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 31 H -0.24 0.20 7.11 56.52 0.40 0.60 16 32 H 0.40 -1.86 7.59 -40.82 -0.31 -2.17 16 33 H 0.08 -0.18 7.85 -51.93 -0.41 -0.58 16 34 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.10 -0.31 8.10 -51.93 -0.42 -0.73 16 36 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 37 H 0.19 -0.81 6.73 -52.48 -0.35 -1.16 16 38 H 0.19 -0.28 8.06 -52.49 -0.42 -0.70 16 39 H 0.09 -0.60 8.14 -51.93 -0.42 -1.02 16 40 H 0.10 -0.55 6.08 -51.93 -0.32 -0.86 16 41 H 0.16 0.22 8.06 -52.49 -0.42 -0.21 16 LS Contribution 357.46 15.07 5.39 5.39 Total: 0.00 -11.30 357.46 -9.44 -20.74 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -5.16 Total: -13.77 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.60 Total: -0.83 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: 0.64 Total: 0.33 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: -0.26 Total: -2.39 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -5.32 Total: -6.94 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.13 Total: -2.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -11.30 -9.44 -20.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.340 kcal (2) G-P(sol) polarization free energy of solvation -11.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds