Wall clock time and date at job start Sun Mar 7 2021 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86293 * 109.47308 * 2 1 4 4 C 1.50703 * 109.46715 * 240.00311 * 2 1 3 5 5 C 1.34236 * 126.50163 * 105.02726 * 4 2 1 6 6 N 1.36837 * 109.93711 * 180.22767 * 5 4 2 7 7 C 1.46495 * 125.05897 * 179.72930 * 6 5 4 8 8 C 1.50702 * 109.47463 * 265.02477 * 7 6 5 9 9 O 1.21281 * 119.99863 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99950 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46810 * 180.02562 * 11 10 8 13 13 H 1.08997 * 112.84817 * 314.66263 * 12 11 10 14 14 C 1.53773 * 113.61620 * 85.86731 * 12 11 10 15 15 C 1.53956 * 87.02510 * 139.94788 * 14 12 11 16 16 H 1.09006 * 113.53612 * 89.18214 * 15 14 12 17 17 N 1.46497 * 113.67159 * 220.06713 * 15 14 12 18 18 C 1.35319 * 125.86395 * 12.26716 * 17 15 14 19 19 C 1.35350 * 106.17188 * 179.90705 * 18 17 15 20 20 N 1.33769 * 106.49685 * 0.35223 * 19 18 17 21 21 N 1.28634 * 108.88575 * 359.77588 * 20 19 18 22 22 C 1.53787 * 113.60889 * 183.47249 * 12 11 10 23 23 C 1.37689 * 109.87393 * 359.55777 * 6 5 4 24 24 C 1.39087 * 133.51282 * 180.09798 * 23 6 5 25 25 C 1.37788 * 119.77795 * 180.36513 * 24 23 6 26 26 C 1.38784 * 120.66934 * 359.97438 * 25 24 23 27 27 C 1.36667 * 120.52601 * 0.02562 * 26 25 24 28 28 C 1.39587 * 119.76286 * 359.97438 * 27 26 25 29 29 H 0.96702 * 114.00644 * 59.99353 * 1 2 3 30 30 H 1.08996 * 109.47026 * 120.00744 * 2 1 3 31 31 H 1.48503 * 109.99708 * 60.00337 * 3 2 1 32 32 H 1.48497 * 110.00270 * 181.31986 * 3 2 1 33 33 H 1.08002 * 125.02686 * 359.95835 * 5 4 2 34 34 H 1.09004 * 109.47318 * 25.02832 * 7 6 5 35 35 H 1.09004 * 109.47068 * 145.02521 * 7 6 5 36 36 H 0.97005 * 119.99829 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46835 * 299.99883 * 11 10 8 38 38 H 1.08993 * 109.46921 * 60.00580 * 11 10 8 39 39 H 1.09004 * 113.61262 * 254.52191 * 14 12 11 40 40 H 1.08998 * 113.61625 * 25.42661 * 14 12 11 41 41 H 1.07998 * 126.91048 * 0.02562 * 18 17 15 42 42 H 1.07994 * 126.74795 * 180.13015 * 19 18 17 43 43 H 1.08991 * 113.61462 * 334.56335 * 22 12 11 44 44 H 1.08997 * 113.61343 * 105.38835 * 22 12 11 45 45 H 1.08000 * 120.10849 * 0.33823 * 24 23 6 46 46 H 1.08005 * 119.66558 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.73904 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.11550 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 2.4611 -0.1376 -2.3228 6 7 2.7982 -1.0987 -3.2367 7 6 3.3967 -0.8395 -4.5485 8 6 2.3120 -0.7813 -5.5930 9 8 1.1530 -0.9401 -5.2731 10 7 2.6298 -0.5517 -6.8825 11 6 1.5752 -0.4945 -7.8978 12 6 2.2005 -0.2240 -9.2678 13 1 2.9481 0.5688 -9.2427 14 6 2.6750 -1.4957 -9.9903 15 6 2.1271 -0.8679 -11.2849 16 1 2.8557 -0.2520 -11.8122 17 7 1.4490 -1.8257 -12.1618 18 6 1.0789 -3.0834 -11.8265 19 6 0.4884 -3.6083 -12.9255 20 7 0.5326 -2.6614 -13.8693 21 7 1.1078 -1.6176 -13.3853 22 6 1.1672 -0.0608 -10.3950 23 6 2.4946 -2.3457 -2.7381 24 6 2.6296 -3.6362 -3.2390 25 6 2.2153 -4.7107 -2.4825 26 6 1.6639 -4.5194 -1.2234 27 6 1.5220 -3.2600 -0.7118 28 6 1.9351 -2.1571 -1.4610 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5139 0.8899 31 1 1.5616 2.4677 1.2086 32 1 3.5346 1.7702 -0.0321 33 1 2.5969 0.9248 -2.4617 34 1 3.9287 0.1116 -4.5237 35 1 4.0948 -1.6400 -4.7939 36 1 3.5568 -0.4243 -7.1382 37 1 1.0432 -1.4455 -7.9230 38 1 0.8774 0.3059 -7.6521 39 1 3.7578 -1.6205 -9.9888 40 1 2.1437 -2.3965 -9.6831 41 1 1.2237 -3.5696 -10.8731 42 1 0.0679 -4.5982 -13.0224 43 1 0.2229 -0.5685 -10.1986 44 1 1.0335 0.9714 -10.7187 45 1 3.0575 -3.7954 -4.2178 46 1 2.3214 -5.7120 -2.8731 47 1 1.3445 -5.3724 -0.6431 48 1 1.0917 -3.1188 0.2687 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567720_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:26:20 Heat of formation + Delta-G solvation = 139.725200 kcal Electronic energy + Delta-G solvation = -32012.584077 eV Core-core repulsion = 27652.541002 eV Total energy + Delta-G solvation = -4360.043076 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.26839 -42.54020 -41.18286 -40.21652 -38.03810 -37.56790 -36.05876 -34.27833 -33.98277 -32.01898 -31.57128 -30.18820 -29.99203 -28.43800 -27.41295 -25.95594 -25.12908 -23.66895 -23.63968 -22.69073 -22.44104 -21.85021 -20.90284 -20.60090 -19.24962 -18.50471 -18.37915 -17.77040 -17.54689 -17.36203 -17.07429 -16.67375 -16.43698 -16.34327 -15.97754 -15.94760 -15.54727 -15.41333 -15.21179 -14.95871 -14.71618 -14.59735 -14.40726 -14.04119 -13.98577 -13.89269 -13.75572 -13.54047 -13.34407 -12.95091 -12.67061 -12.64594 -12.50420 -12.25532 -12.15183 -12.12295 -12.05182 -11.76098 -11.72193 -11.22681 -11.03879 -10.47722 -10.42940 -10.36182 -10.24652 -9.07753 -8.58193 -5.04969 0.22461 0.58623 0.73726 1.23394 1.27954 1.34455 1.35891 1.63378 1.65472 1.68440 1.98568 2.00518 2.65424 2.81301 3.04415 3.08852 3.16001 3.37941 3.40725 3.48068 3.59845 3.65045 3.71833 3.73624 3.80538 3.80880 3.97157 4.03257 4.05201 4.14434 4.23915 4.26449 4.27978 4.31262 4.35437 4.43680 4.48945 4.53536 4.66375 4.69277 4.74354 4.79681 4.85236 4.93742 5.04250 5.19629 5.20223 5.57315 5.59310 5.75404 5.80867 5.85010 6.02257 6.23304 6.30638 6.74829 6.87180 7.56048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.030 4.030 3 Si 0.682 3.318 4 C -0.197 4.197 5 C 0.068 3.932 6 N -0.467 5.467 7 C 0.092 3.908 8 C 0.491 3.509 9 O -0.510 6.510 10 N -0.729 5.729 11 C 0.133 3.867 12 C -0.118 4.118 13 H 0.111 0.889 14 C -0.139 4.139 15 C 0.116 3.884 16 H 0.137 0.863 17 N -0.282 5.282 18 C -0.052 4.052 19 C -0.049 4.049 20 N -0.271 5.271 21 N -0.085 5.085 22 C -0.132 4.132 23 C 0.108 3.892 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.146 4.146 27 C -0.065 4.065 28 C -0.087 4.087 29 H 0.377 0.623 30 H 0.110 0.890 31 H -0.254 1.254 32 H -0.256 1.256 33 H 0.171 0.829 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.188 0.812 42 H 0.191 0.809 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 2.262 -0.398 6.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.584 3.416 4 C -0.204 4.204 5 C -0.057 4.057 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.274 3.726 9 O -0.384 6.384 10 N -0.383 5.383 11 C 0.009 3.991 12 C -0.137 4.137 13 H 0.129 0.871 14 C -0.177 4.177 15 C 0.014 3.986 16 H 0.155 0.845 17 N -0.076 5.076 18 C -0.203 4.203 19 C -0.206 4.206 20 N -0.137 5.137 21 N -0.064 5.064 22 C -0.171 4.171 23 C 0.004 3.996 24 C -0.149 4.149 25 C -0.116 4.116 26 C -0.165 4.165 27 C -0.084 4.084 28 C -0.091 4.091 29 H 0.225 0.775 30 H 0.128 0.872 31 H -0.179 1.179 32 H -0.180 1.180 33 H 0.188 0.812 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.205 0.795 42 H 0.208 0.792 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.132 0.868 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.793 3.545 -0.648 6.822 hybrid contribution 0.648 -1.346 0.763 1.677 sum 6.441 2.199 0.115 6.807 Atomic orbital electron populations 1.86493 1.17406 1.81816 1.48971 1.24333 0.84804 1.08757 0.96220 0.95267 0.80615 0.77824 0.87895 1.20662 1.09521 0.92409 0.97842 1.21506 1.01299 0.93776 0.89078 1.43181 1.54233 1.04621 1.13001 1.21574 0.94540 1.06002 0.81325 1.21024 0.90880 0.77247 0.83414 1.90833 1.20058 1.46961 1.80544 1.45918 1.11065 1.74280 1.07068 1.21319 0.89950 1.02852 0.84961 1.22626 0.99298 0.98545 0.93263 0.87066 1.23625 1.03090 0.98620 0.92390 1.23398 0.96185 0.90721 0.88313 0.84515 1.47495 1.38514 1.11300 1.10263 1.23582 1.06194 0.87098 1.03375 1.23692 1.04986 1.01759 0.90187 1.75169 1.14801 0.97527 1.26157 1.78347 1.14659 1.20709 0.92705 1.23414 0.98044 1.02157 0.93477 1.18161 1.01458 0.85829 0.94153 1.19938 1.05406 0.89275 1.00290 1.20827 0.98325 0.97955 0.94456 1.20678 1.02392 0.96960 0.96436 1.20319 0.97817 0.90957 0.99284 1.18949 1.03114 0.92827 0.94187 0.77548 0.87240 1.17873 1.18042 0.81196 0.85880 0.86483 0.76280 0.90903 0.90511 0.88960 0.88193 0.79472 0.79216 0.88423 0.88808 0.86788 0.85721 0.85910 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.05 12.88 -35.23 -0.45 -1.50 16 2 C -0.03 -0.03 3.06 36.01 0.11 0.08 16 3 Si 0.68 -0.65 30.75 -169.99 -5.23 -5.88 16 4 C -0.20 -0.36 5.58 -102.71 -0.57 -0.93 16 5 C 0.07 -0.01 9.89 -16.73 -0.17 -0.18 16 6 N -0.47 -0.07 2.27 -115.71 -0.26 -0.33 16 7 C 0.09 -0.37 6.48 -5.20 -0.03 -0.40 16 8 C 0.49 -1.01 7.90 -10.99 -0.09 -1.09 16 9 O -0.51 -1.67 16.43 5.56 0.09 -1.58 16 10 N -0.73 3.94 5.56 -60.29 -0.33 3.61 16 11 C 0.13 -0.63 5.50 -4.04 -0.02 -0.65 16 12 C -0.12 0.81 3.75 -89.81 -0.34 0.47 16 13 H 0.11 -0.92 8.14 -51.93 -0.42 -1.34 16 14 C -0.14 0.91 6.99 -25.83 -0.18 0.73 16 15 C 0.12 -0.47 4.96 -67.02 -0.33 -0.80 16 16 H 0.14 -0.66 8.14 -51.93 -0.42 -1.08 16 17 N -0.28 0.03 3.53 -53.88 -0.19 -0.16 16 18 C -0.05 0.06 10.78 -17.04 -0.18 -0.12 16 19 C -0.05 -0.05 12.05 -17.74 -0.21 -0.27 16 20 N -0.27 -1.31 12.41 30.23 0.38 -0.94 16 21 N -0.08 -0.34 13.16 60.35 0.79 0.46 16 22 C -0.13 0.65 7.44 -25.91 -0.19 0.46 16 23 C 0.11 0.29 6.81 -83.99 -0.57 -0.29 16 24 C -0.13 -0.22 10.00 -39.43 -0.39 -0.62 16 25 C -0.10 -0.16 10.01 -39.54 -0.40 -0.55 16 26 C -0.15 -0.33 9.97 -39.95 -0.40 -0.72 16 27 C -0.07 -0.22 10.05 -39.65 -0.40 -0.62 16 28 C -0.09 -0.32 6.35 -105.14 -0.67 -0.99 16 29 H 0.38 -0.59 8.70 45.56 0.40 -0.20 16 30 H 0.11 0.18 7.96 -51.93 -0.41 -0.24 16 31 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 32 H -0.26 -0.27 7.11 56.52 0.40 0.14 16 33 H 0.17 -0.64 6.35 -52.49 -0.33 -0.97 16 34 H 0.12 -0.90 8.12 -51.93 -0.42 -1.32 16 35 H 0.12 -0.70 8.14 -51.93 -0.42 -1.12 16 36 H 0.40 -3.44 8.47 -40.82 -0.35 -3.79 16 37 H 0.07 -0.24 7.87 -51.93 -0.41 -0.65 16 38 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 39 H 0.09 -0.69 8.14 -51.93 -0.42 -1.11 16 40 H 0.10 -0.64 6.11 -51.93 -0.32 -0.95 16 41 H 0.19 -0.91 6.74 -52.49 -0.35 -1.26 16 42 H 0.19 -0.35 8.06 -52.49 -0.42 -0.78 16 43 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 44 H 0.09 -0.47 8.14 -51.93 -0.42 -0.89 16 45 H 0.11 -0.05 8.06 -52.49 -0.42 -0.47 16 46 H 0.12 -0.07 8.06 -52.48 -0.42 -0.50 16 47 H 0.12 0.05 8.06 -52.49 -0.42 -0.38 16 48 H 0.12 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 406.32 15.07 6.12 6.12 Total: 0.00 -14.82 406.32 -10.59 -25.41 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: -6.47 Total: -18.71 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -5.04 Total: -6.50 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: 0.38 Total: 2.63 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -0.36 Total: -3.08 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.23 Total: -5.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -14.82 -10.59 -25.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567720_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.132 kcal (2) G-P(sol) polarization free energy of solvation -14.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds