Wall clock time and date at job start Sun Mar 7 2021 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47416 * 2 1 4 4 C 1.50701 * 109.47157 * 120.00278 * 2 1 3 5 5 C 1.35091 * 126.07142 * 254.97016 * 4 2 1 6 6 N 1.35043 * 107.97194 * 179.97438 * 5 4 2 7 7 C 1.46507 * 125.92500 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46928 * 125.00590 * 7 6 5 9 9 O 1.21281 * 120.00364 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00012 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00119 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47108 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.85043 * 314.66487 * 12 11 10 14 14 C 1.53785 * 113.69093 * 85.93603 * 12 11 10 15 15 C 1.53779 * 87.08093 * 139.99088 * 14 12 11 16 16 H 1.09003 * 113.61186 * 89.11185 * 15 14 12 17 17 N 1.46495 * 113.69143 * 220.00570 * 15 14 12 18 18 C 1.34438 * 126.82215 * 12.53549 * 17 15 14 19 19 N 1.30824 * 108.07702 * 179.97438 * 18 17 15 20 20 C 1.33243 * 109.83402 * 359.97438 * 19 18 17 21 21 N 1.30714 * 108.94081 * 359.75486 * 20 19 18 22 22 C 1.53781 * 113.61293 * 183.47228 * 12 11 10 23 23 N 1.40069 * 108.14356 * 0.26897 * 6 5 4 24 24 C 1.31617 * 108.10475 * 359.55063 * 23 6 5 25 25 C 1.48424 * 126.03828 * 180.13120 * 24 23 6 26 26 C 1.39320 * 120.11848 * 145.07733 * 25 24 23 27 27 C 1.38025 * 119.87674 * 179.77237 * 26 25 24 28 28 C 1.38322 * 120.11895 * 0.48798 * 27 26 25 29 29 C 1.38322 * 120.24199 * 359.79387 * 28 27 26 30 30 C 1.38022 * 120.11864 * 359.94853 * 29 28 27 31 31 H 0.96701 * 114.00223 * 299.99839 * 1 2 3 32 32 H 1.09001 * 109.47403 * 240.00123 * 2 1 3 33 33 H 1.48492 * 110.00351 * 178.68029 * 3 2 1 34 34 H 1.48501 * 109.99913 * 300.00374 * 3 2 1 35 35 H 1.07991 * 126.01198 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.46880 * 5.00271 * 7 6 5 37 37 H 1.08996 * 109.47091 * 245.00070 * 7 6 5 38 38 H 0.96997 * 119.99419 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.46936 * 59.99437 * 11 10 8 40 40 H 1.09004 * 109.46937 * 300.00111 * 11 10 8 41 41 H 1.09003 * 113.60734 * 254.54208 * 14 12 11 42 42 H 1.08996 * 113.61146 * 25.43706 * 14 12 11 43 43 H 1.08002 * 125.95625 * 359.92971 * 18 17 15 44 44 H 1.07999 * 125.53208 * 180.02562 * 20 19 18 45 45 H 1.09005 * 113.61302 * 334.47929 * 22 12 11 46 46 H 1.08996 * 113.61527 * 105.30092 * 22 12 11 47 47 H 1.08000 * 120.06172 * 0.02562 * 26 25 24 48 48 H 1.07999 * 119.94285 * 180.28323 * 27 26 25 49 49 H 1.08003 * 119.87856 * 179.76276 * 28 27 26 50 50 H 1.08001 * 119.93863 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.06105 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.4634 -0.1250 2.3254 6 7 2.7882 -1.0991 3.2025 7 6 3.3931 -0.9010 4.5220 8 6 2.5388 -1.5649 5.5711 9 8 1.5243 -2.1459 5.2484 10 7 2.9017 -1.5122 6.8681 11 6 2.0709 -2.1570 7.8879 12 6 2.7027 -1.9503 9.2659 13 1 3.7770 -2.1345 9.2709 14 6 2.3016 -0.6261 9.9372 15 6 2.2145 -1.4120 11.2561 16 1 3.1555 -1.4491 11.8052 17 7 1.0795 -1.0255 12.0978 18 6 0.0305 -0.2662 11.7369 19 7 -0.7637 -0.1534 12.7703 20 6 -0.2579 -0.8243 13.8045 21 7 0.8677 -1.3801 13.4401 22 6 1.9502 -2.6632 10.4018 23 7 2.4514 -2.3321 2.6294 24 6 1.9290 -2.1027 1.4433 25 6 1.4321 -3.1302 0.4945 26 6 0.3264 -2.8627 -0.3098 27 6 -0.1286 -3.8201 -1.1937 28 6 0.5049 -5.0470 -1.2747 29 6 1.5995 -5.3201 -0.4743 30 6 2.0661 -4.3680 0.4093 31 1 -0.3934 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8900 33 1 3.5345 1.7703 0.0321 34 1 1.5615 2.4679 -1.2085 35 1 2.6035 0.9355 2.4737 36 1 3.4638 0.1661 4.7328 37 1 4.3904 -1.3406 4.5342 38 1 3.7129 -1.0472 7.1261 39 1 2.0001 -3.2242 7.6774 40 1 1.0735 -1.7174 7.8754 41 1 3.0915 0.1250 9.9277 42 1 1.3421 -0.2370 9.5965 43 1 -0.1285 0.1744 10.7637 44 1 -0.7073 -0.9004 14.7836 45 1 0.8945 -2.8309 10.1883 46 1 2.4556 -3.5573 10.7666 47 1 -0.1713 -1.9064 -0.2446 48 1 -0.9828 -3.6121 -1.8210 49 1 0.1432 -5.7948 -1.9650 50 1 2.0901 -6.2799 -0.5412 51 1 2.9210 -4.5820 1.0335 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567722_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:28:00 Heat of formation + Delta-G solvation = 170.638307 kcal Electronic energy + Delta-G solvation = -35206.151418 eV Core-core repulsion = 30498.259165 eV Total energy + Delta-G solvation = -4707.892253 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.174 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -43.13119 -42.45704 -40.91074 -39.99916 -39.68747 -37.72257 -35.79065 -34.75340 -33.47740 -32.33315 -32.17720 -31.89679 -31.42638 -29.71336 -28.00699 -26.93455 -25.94548 -25.08157 -23.99989 -23.48669 -22.96939 -22.35176 -21.86935 -21.42199 -20.97822 -20.38242 -18.88997 -18.47976 -18.02087 -17.75651 -17.29825 -17.05126 -16.76708 -16.68020 -16.35956 -16.18043 -15.99885 -15.86963 -15.80030 -15.39464 -15.28608 -15.16347 -14.77642 -14.63637 -14.40265 -14.21355 -14.10263 -13.90461 -13.73849 -13.62630 -13.59223 -13.37383 -13.18944 -12.86932 -12.45133 -12.37542 -12.23960 -12.13116 -11.88279 -11.79887 -11.66489 -11.53143 -11.24536 -11.04448 -10.85944 -10.65493 -10.55125 -10.23316 -10.14408 -9.88544 -9.73029 -9.27076 -4.95814 0.06727 0.46388 0.62401 0.86615 1.32484 1.36943 1.46079 1.54046 1.67504 1.81022 1.95630 2.08321 2.13525 2.89722 3.10563 3.29108 3.39276 3.43883 3.51844 3.60578 3.64261 3.71721 3.77407 3.86354 4.00139 4.02554 4.11807 4.13023 4.17417 4.18784 4.20996 4.29614 4.34461 4.45390 4.52598 4.57668 4.61976 4.63127 4.70050 4.77775 4.81728 4.85646 4.89010 4.94186 5.00276 5.14763 5.17456 5.31998 5.34636 5.41289 5.44948 5.56022 5.61522 5.64451 5.89001 5.97239 6.05268 6.51462 6.63253 6.88907 7.08310 7.22283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.042 4.042 3 Si 0.806 3.194 4 C -0.271 4.271 5 C 0.081 3.919 6 N -0.359 5.359 7 C 0.109 3.891 8 C 0.494 3.506 9 O -0.569 6.569 10 N -0.708 5.708 11 C 0.136 3.864 12 C -0.097 4.097 13 H 0.132 0.868 14 C -0.124 4.124 15 C 0.120 3.880 16 H 0.132 0.868 17 N -0.369 5.369 18 C 0.255 3.745 19 N -0.581 5.581 20 C 0.188 3.812 21 N -0.354 5.354 22 C -0.140 4.140 23 N -0.297 5.297 24 C 0.106 3.894 25 C -0.039 4.039 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.118 4.118 29 C -0.132 4.132 30 C -0.112 4.112 31 H 0.393 0.607 32 H 0.089 0.911 33 H -0.280 1.280 34 H -0.304 1.304 35 H 0.231 0.769 36 H 0.186 0.814 37 H 0.139 0.861 38 H 0.424 0.576 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.251 0.749 44 H 0.235 0.765 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.158 0.842 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.141 0.859 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 7.338 1.752 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.152 4.152 3 Si 0.710 3.290 4 C -0.282 4.282 5 C -0.064 4.064 6 N -0.141 5.141 7 C -0.015 4.015 8 C 0.280 3.720 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.116 4.116 13 H 0.150 0.850 14 C -0.163 4.163 15 C 0.018 3.982 16 H 0.150 0.850 17 N -0.159 5.159 18 C -0.041 4.041 19 N -0.309 5.309 20 C -0.115 4.115 21 N -0.182 5.182 22 C -0.179 4.179 23 N -0.119 5.119 24 C -0.059 4.059 25 C -0.041 4.041 26 C -0.131 4.131 27 C -0.150 4.150 28 C -0.137 4.137 29 C -0.150 4.150 30 C -0.132 4.132 31 H 0.244 0.756 32 H 0.107 0.893 33 H -0.207 1.207 34 H -0.232 1.232 35 H 0.247 0.753 36 H 0.203 0.797 37 H 0.156 0.844 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.267 0.733 44 H 0.251 0.749 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.175 0.825 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.159 0.841 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.151 6.065 2.084 9.605 hybrid contribution -0.001 -0.598 -0.595 0.844 sum 7.150 5.467 1.489 9.123 Atomic orbital electron populations 1.86329 1.17962 1.81543 1.50463 1.24624 0.84613 1.11035 0.94898 0.94018 0.77064 0.72834 0.85070 1.20654 1.14600 0.92289 1.00691 1.22910 0.97809 0.96922 0.88801 1.48171 1.48041 1.03536 1.14351 1.22040 0.96722 1.06744 0.75983 1.21081 0.86029 0.80484 0.84443 1.90847 1.27944 1.44123 1.81715 1.45685 1.28787 1.56786 1.05014 1.21203 0.94258 0.97304 0.86050 1.22493 1.01995 0.96160 0.90948 0.85042 1.23581 1.05001 0.97518 0.90164 1.23381 0.87499 0.98214 0.89058 0.85023 1.50772 1.19361 1.37559 1.08257 1.26620 0.83922 0.92622 1.00892 1.70575 1.32517 1.27222 1.00622 1.26513 0.90869 0.93484 1.00599 1.77989 1.20996 1.25555 0.93668 1.23446 1.01767 0.97625 0.95107 1.77676 1.20622 1.04500 1.09079 1.20844 0.98850 0.93788 0.92411 1.18095 0.97100 0.92588 0.96316 1.22075 0.95088 1.01579 0.94391 1.21442 1.00802 0.93687 0.99037 1.21594 0.95459 0.97523 0.99080 1.21344 0.97562 0.99766 0.96356 1.21316 1.00077 0.93041 0.98743 0.75639 0.89337 1.20671 1.23188 0.75294 0.79722 0.84361 0.73807 0.93210 0.91925 0.86683 0.87961 0.73331 0.74936 0.90200 0.89785 0.82509 0.84022 0.83737 0.84136 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.31 10.10 -148.98 -1.50 -1.81 16 2 C -0.04 -0.03 2.00 71.24 0.14 0.12 16 3 Si 0.81 -4.00 30.74 68.60 2.11 -1.89 16 4 C -0.27 -0.80 5.34 -19.95 -0.11 -0.91 16 5 C 0.08 -0.29 9.96 83.47 0.83 0.54 16 6 N -0.36 -0.16 3.40 -351.91 -1.19 -1.35 16 7 C 0.11 -1.09 6.98 85.63 0.60 -0.49 16 8 C 0.49 -1.51 7.86 87.65 0.69 -0.82 16 9 O -0.57 -6.06 15.71 -3.03 -0.05 -6.11 16 10 N -0.71 7.87 5.56 -463.05 -2.57 5.30 16 11 C 0.14 -1.11 5.50 86.38 0.48 -0.63 16 12 C -0.10 1.34 3.75 -10.27 -0.04 1.30 16 13 H 0.13 -2.31 8.14 -2.39 -0.02 -2.33 16 14 C -0.12 1.86 7.00 31.12 0.22 2.07 16 15 C 0.12 -0.95 5.07 45.52 0.23 -0.72 16 16 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 17 N -0.37 0.02 3.83 -328.93 -1.26 -1.24 16 18 C 0.26 -0.15 11.87 180.36 2.14 1.99 16 19 N -0.58 -3.54 11.19 -204.00 -2.28 -5.82 16 20 C 0.19 1.01 13.03 180.76 2.36 3.37 16 21 N -0.35 -2.30 12.70 -61.24 -0.78 -3.08 16 22 C -0.14 1.15 7.44 31.12 0.23 1.38 16 23 N -0.30 -3.25 11.65 -48.16 -0.56 -3.81 16 24 C 0.11 1.11 6.74 42.53 0.29 1.40 16 25 C -0.04 -0.46 5.80 -20.04 -0.12 -0.58 16 26 C -0.11 -1.09 8.95 22.48 0.20 -0.89 16 27 C -0.13 -0.91 10.03 22.24 0.22 -0.68 16 28 C -0.12 -0.67 10.04 22.31 0.22 -0.45 16 29 C -0.13 -0.95 10.03 22.24 0.22 -0.73 16 30 C -0.11 -1.22 9.75 22.48 0.22 -1.01 16 31 H 0.39 -2.90 8.70 -74.06 -0.64 -3.54 16 32 H 0.09 0.41 7.84 -2.39 -0.02 0.39 16 33 H -0.28 0.27 7.11 99.48 0.71 0.97 16 34 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 35 H 0.23 -3.52 6.40 -2.92 -0.02 -3.54 16 36 H 0.19 -3.99 8.07 -2.39 -0.02 -4.01 16 37 H 0.14 -1.93 8.14 -2.39 -0.02 -1.95 16 38 H 0.42 -8.33 8.47 -92.71 -0.79 -9.11 16 39 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 40 H 0.06 -0.34 7.88 -2.39 -0.02 -0.36 16 41 H 0.11 -2.15 8.14 -2.39 -0.02 -2.17 16 42 H 0.10 -1.58 6.18 -2.39 -0.01 -1.59 16 43 H 0.25 -2.48 6.75 -2.91 -0.02 -2.50 16 44 H 0.23 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.08 -0.38 8.10 -2.38 -0.02 -0.40 16 46 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.16 1.35 4.52 -2.91 -0.01 1.33 16 48 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 49 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 50 H 0.14 0.36 8.06 -2.91 -0.02 0.34 16 51 H 0.12 1.25 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -45.42 428.28 0.55 -44.87 By element: Atomic # 1 Polarization: -28.92 SS G_CDS: -0.39 Total: -29.31 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 9.03 Total: 4.26 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -8.65 Total: -10.01 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -1.55 Total: -7.92 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.11 Total: -1.89 kcal Total: -45.42 0.55 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567722_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.512 kcal (2) G-P(sol) polarization free energy of solvation -45.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds