Wall clock time and date at job start Sun Mar 7 2021 07:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86294 * 109.47072 * 2 1 4 4 C 1.50703 * 109.46840 * 119.99659 * 2 1 3 5 5 C 1.38262 * 119.94363 * 65.00669 * 4 2 1 6 6 C 1.38145 * 120.05942 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94244 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05873 * 180.02562 * 7 6 5 9 9 C 1.42905 * 117.00039 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 C 1.36418 * 125.80036 * 90.00389 * 10 9 8 12 12 C 1.47374 * 127.19589 * 0.03055 * 11 10 9 13 13 O 1.21618 * 119.99481 * 0.02562 * 12 11 10 14 14 N 1.34770 * 120.00486 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00486 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47554 * 180.02562 * 15 14 12 17 17 H 1.09003 * 112.84887 * 316.19624 * 16 15 14 18 18 C 1.53780 * 113.61859 * 87.49654 * 16 15 14 19 19 C 1.53777 * 87.08009 * 139.98098 * 18 16 15 20 20 H 1.09009 * 113.69017 * 89.13469 * 19 18 16 21 21 N 1.46499 * 113.61846 * 220.02187 * 19 18 16 22 22 C 1.34431 * 126.82243 * 12.49857 * 21 19 18 23 23 N 1.30830 * 108.07725 * 179.97438 * 22 21 19 24 24 C 1.33236 * 109.83058 * 0.02562 * 23 22 21 25 25 N 1.30713 * 108.94621 * 359.74893 * 24 23 22 26 26 C 1.53778 * 87.08488 * 334.57110 * 19 18 16 27 27 C 1.47026 * 105.61474 * 180.02562 * 11 10 9 28 28 C 1.34184 * 105.95250 * 359.97438 * 27 11 10 29 29 O 1.33656 * 125.80419 * 269.69504 * 10 9 8 30 30 C 1.38738 * 119.88718 * 0.27269 * 7 6 5 31 31 C 1.38148 * 119.94048 * 359.47662 * 30 7 6 32 32 H 0.96699 * 113.99859 * 299.99809 * 1 2 3 33 33 H 1.08995 * 109.46669 * 239.99877 * 2 1 3 34 34 H 1.48498 * 109.99950 * 299.99917 * 3 2 1 35 35 H 1.48504 * 110.00217 * 61.31958 * 3 2 1 36 36 H 1.08009 * 119.97583 * 359.96692 * 5 4 2 37 37 H 1.08000 * 120.03441 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 39 39 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 40 40 H 0.97007 * 119.99874 * 0.02562 * 14 12 11 41 41 H 1.09004 * 109.46942 * 300.00314 * 15 14 12 42 42 H 1.08998 * 109.47195 * 59.99663 * 15 14 12 43 43 H 1.08994 * 113.61824 * 254.53614 * 18 16 15 44 44 H 1.09008 * 113.60855 * 25.44209 * 18 16 15 45 45 H 1.08003 * 125.95656 * 359.97438 * 22 21 19 46 46 H 1.08000 * 125.52553 * 180.02562 * 24 23 22 47 47 H 1.08995 * 113.61584 * 270.88031 * 26 19 18 48 48 H 1.09005 * 113.69099 * 139.98648 * 26 19 18 49 49 H 1.07994 * 127.02262 * 179.97438 * 27 11 10 50 50 H 1.08004 * 125.43527 * 179.97438 * 28 27 11 51 51 H 1.07995 * 120.02746 * 179.71906 * 30 7 6 52 52 H 1.08004 * 119.97067 * 180.22662 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6841 -2.0604 1.3973 6 6 2.1438 -2.7141 2.5241 7 6 2.8547 -2.0148 3.4887 8 8 3.3085 -2.6556 4.5978 9 6 4.0333 -1.8726 5.5485 10 6 4.4540 -2.7461 6.7022 11 6 5.6215 -3.4464 6.7887 12 6 6.7049 -3.4989 5.7910 13 8 6.6080 -2.8700 4.7546 14 7 7.8029 -4.2439 6.0270 15 6 8.8801 -4.2957 5.0355 16 6 9.9994 -5.2055 5.5454 17 1 10.2368 -5.0365 6.5958 18 6 9.7996 -6.6878 5.1880 19 6 11.3111 -6.7433 4.9102 20 1 11.9084 -6.9963 5.7862 21 7 11.6625 -7.5407 3.7325 22 6 10.8213 -7.9981 2.7889 23 7 11.5228 -8.6646 1.9084 24 6 12.8093 -8.6551 2.2545 25 7 12.9458 -7.9749 3.3623 26 6 11.2357 -5.2329 4.6312 27 6 5.5732 -4.1377 8.0854 28 6 4.4030 -3.7926 8.6440 29 8 3.7492 -2.9618 7.8172 30 6 3.0970 -0.6590 3.3215 31 6 2.6395 -0.0112 2.1903 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5615 2.4678 -1.2085 35 1 1.5879 2.4586 1.2243 36 1 1.1309 -2.6046 0.6460 37 1 1.9501 -3.7686 2.6542 38 1 4.9178 -1.4498 5.0720 39 1 3.3978 -1.0666 5.9153 40 1 7.8800 -4.7459 6.8535 41 1 8.4911 -4.6900 4.0967 42 1 9.2728 -3.2920 4.8729 43 1 9.4879 -7.3024 6.0324 44 1 9.1866 -6.8439 4.3002 45 1 9.7529 -7.8424 2.7625 46 1 13.6102 -9.1286 1.7061 47 1 11.0153 -4.9913 3.5915 48 1 12.0829 -4.6718 5.0257 49 1 6.3258 -4.7901 8.5029 50 1 4.0460 -4.1269 9.6069 51 1 3.6462 -0.1115 4.0731 52 1 2.8311 1.0434 2.0579 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567722_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:30:13 Heat of formation + Delta-G solvation = 72.791823 kcal Electronic energy + Delta-G solvation = -37405.169426 eV Core-core repulsion = 32342.059288 eV Total energy + Delta-G solvation = -5063.110138 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.69608 -43.12760 -41.30439 -40.84652 -39.86439 -39.25431 -37.31524 -35.82291 -34.16013 -33.38499 -32.83050 -32.17346 -31.98807 -31.39879 -29.35431 -27.70775 -26.93276 -26.20026 -25.40979 -24.16515 -23.77102 -22.96385 -22.51227 -22.36104 -21.98002 -21.14319 -20.31369 -19.51396 -19.18385 -18.43274 -18.26105 -17.40586 -17.24954 -17.15226 -16.99632 -16.91686 -16.68670 -16.39411 -16.26660 -16.17960 -16.01309 -15.77383 -15.68289 -15.36112 -15.13969 -14.73659 -14.58267 -14.53508 -14.38889 -14.19237 -13.85548 -13.66477 -13.61716 -13.57976 -13.46299 -13.34490 -13.10062 -12.84596 -12.33542 -12.25029 -12.14934 -12.06990 -11.79493 -11.65159 -11.62292 -11.13606 -11.03558 -10.94289 -10.85076 -10.59134 -10.56015 -10.16336 -10.05859 -9.80190 -9.25992 -4.91817 -0.01512 0.25888 0.28886 0.62565 1.06240 1.31963 1.36133 1.53941 1.58523 1.94539 1.96071 2.07766 2.15801 2.48725 2.62929 3.10947 3.30157 3.36038 3.44074 3.44369 3.52176 3.64247 3.66723 3.68852 3.75546 3.79620 3.86906 3.90285 3.94462 4.11843 4.13979 4.18963 4.28490 4.31029 4.41831 4.47796 4.54305 4.57343 4.60206 4.65512 4.68513 4.71513 4.80468 4.83038 4.88259 4.94933 4.95053 5.13574 5.15035 5.24562 5.28952 5.35114 5.42140 5.45032 5.46768 5.67895 5.88550 5.91174 6.25282 6.47490 6.49824 7.08761 7.14338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.077 4.077 3 Si 0.762 3.238 4 C -0.158 4.158 5 C -0.057 4.057 6 C -0.162 4.162 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.134 3.866 10 C 0.037 3.963 11 C -0.221 4.221 12 C 0.582 3.418 13 O -0.572 6.572 14 N -0.704 5.704 15 C 0.133 3.867 16 C -0.099 4.099 17 H 0.131 0.869 18 C -0.130 4.130 19 C 0.121 3.879 20 H 0.133 0.867 21 N -0.368 5.368 22 C 0.254 3.746 23 N -0.581 5.581 24 C 0.188 3.812 25 N -0.352 5.352 26 C -0.135 4.135 27 C -0.194 4.194 28 C -0.016 4.016 29 O -0.180 6.180 30 C -0.206 4.206 31 C -0.078 4.078 32 H 0.385 0.615 33 H 0.124 0.876 34 H -0.303 1.303 35 H -0.280 1.280 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.417 0.583 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.248 0.752 46 H 0.235 0.765 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.196 0.804 50 H 0.250 0.750 51 H 0.147 0.853 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 0.136 8.834 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.668 3.332 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.080 3.920 8 O -0.236 6.236 9 C 0.060 3.940 10 C -0.016 4.016 11 C -0.226 4.226 12 C 0.370 3.630 13 O -0.453 6.453 14 N -0.356 5.356 15 C 0.010 3.990 16 C -0.118 4.118 17 H 0.149 0.851 18 C -0.169 4.169 19 C 0.020 3.980 20 H 0.151 0.849 21 N -0.159 5.159 22 C -0.042 4.042 23 N -0.309 5.309 24 C -0.115 4.115 25 N -0.180 5.180 26 C -0.174 4.174 27 C -0.212 4.212 28 C -0.081 4.081 29 O -0.076 6.076 30 C -0.224 4.224 31 C -0.095 4.095 32 H 0.235 0.765 33 H 0.141 0.859 34 H -0.231 1.231 35 H -0.206 1.206 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.255 0.745 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.264 0.736 46 H 0.251 0.749 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.213 0.787 50 H 0.266 0.734 51 H 0.165 0.835 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.905 0.998 7.829 8.119 hybrid contribution -0.928 -0.356 0.814 1.284 sum 0.978 0.642 8.642 8.721 Atomic orbital electron populations 1.86568 1.18622 1.80384 1.50137 1.25148 0.83320 1.11685 0.98463 0.94063 0.90481 0.72217 0.76444 1.20261 1.02592 0.94982 0.97975 1.20961 0.96576 0.93880 0.96108 1.20630 1.02165 1.01127 0.94131 1.19177 0.94412 0.91677 0.86698 1.86048 1.68942 1.38921 1.29694 1.21148 0.98146 0.90734 0.83962 1.22053 0.91032 1.00529 0.87975 1.21398 0.97107 1.05339 0.98749 1.17399 0.81824 0.78938 0.84830 1.90794 1.80454 1.45964 1.28124 1.45593 1.17807 1.48799 1.23370 1.21336 0.86091 1.00196 0.91391 1.22506 0.93628 0.93834 1.01796 0.85086 1.23607 0.91875 0.96991 1.04408 1.23371 0.98904 0.90163 0.85610 0.84936 1.50770 1.04201 1.39934 1.20961 1.26577 1.00381 0.92241 0.84960 1.70579 1.04675 1.25287 1.30359 1.26521 0.95041 0.97094 0.92795 1.77987 1.01902 1.19999 1.18119 1.23421 0.98980 0.93947 1.01032 1.23272 1.00579 1.04424 0.92946 1.24914 0.92908 0.92940 0.97350 1.83791 1.45042 1.53609 1.25148 1.21407 1.06305 0.93354 1.01341 1.21046 0.95732 1.00260 0.92493 0.76543 0.85850 1.23083 1.20623 0.84228 0.84814 0.87275 0.88493 0.74516 0.91725 0.91687 0.87291 0.88175 0.73629 0.74855 0.89844 0.89274 0.78733 0.73425 0.83511 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.07 12.83 -148.98 -1.91 -3.98 16 2 C -0.08 -0.07 2.80 71.24 0.20 0.13 16 3 Si 0.76 -0.64 29.88 68.60 2.05 1.41 16 4 C -0.16 -0.35 5.35 -19.85 -0.11 -0.46 16 5 C -0.06 -0.21 9.68 22.25 0.22 0.00 16 6 C -0.16 -0.92 9.99 22.37 0.22 -0.70 16 7 C 0.13 0.82 6.69 22.51 0.15 0.97 16 8 O -0.32 -2.58 10.12 -92.39 -0.93 -3.51 16 9 C 0.13 0.48 4.74 71.24 0.34 0.82 16 10 C 0.04 0.12 7.00 25.26 0.18 0.30 16 11 C -0.22 -0.20 6.31 -18.99 -0.12 -0.32 16 12 C 0.58 1.43 7.81 86.65 0.68 2.10 16 13 O -0.57 -5.76 14.84 -4.09 -0.06 -5.82 16 14 N -0.70 4.20 5.55 -466.44 -2.59 1.61 16 15 C 0.13 -0.89 5.51 86.38 0.48 -0.42 16 16 C -0.10 1.22 3.75 -10.27 -0.04 1.18 16 17 H 0.13 -2.11 8.14 -2.39 -0.02 -2.13 16 18 C -0.13 1.62 7.00 31.12 0.22 1.84 16 19 C 0.12 -0.85 5.07 45.52 0.23 -0.61 16 20 H 0.13 -1.05 8.14 -2.38 -0.02 -1.07 16 21 N -0.37 -0.27 3.83 -328.93 -1.26 -1.53 16 22 C 0.25 0.15 11.87 180.36 2.14 2.29 16 23 N -0.58 -4.01 11.19 -204.00 -2.28 -6.30 16 24 C 0.19 1.10 13.03 180.77 2.36 3.45 16 25 N -0.35 -2.41 12.70 -61.25 -0.78 -3.19 16 26 C -0.13 1.10 7.44 31.12 0.23 1.33 16 27 C -0.19 1.27 10.60 23.65 0.25 1.52 16 28 C -0.02 0.10 12.03 66.89 0.80 0.90 16 29 O -0.18 -0.21 10.52 4.51 0.05 -0.16 16 30 C -0.21 -0.61 9.04 22.37 0.20 -0.41 16 31 C -0.08 -0.10 8.66 22.25 0.19 0.10 16 32 H 0.39 -0.69 8.70 -74.06 -0.64 -1.33 16 33 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 16 34 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 35 H -0.28 -0.63 7.01 99.48 0.70 0.07 16 36 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 37 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.11 0.47 6.01 -2.39 -0.01 0.46 16 39 H 0.10 -0.07 7.65 -2.39 -0.02 -0.09 16 40 H 0.42 -5.19 7.64 -92.70 -0.71 -5.90 16 41 H 0.06 -0.27 7.84 -2.39 -0.02 -0.28 16 42 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.11 -1.66 8.14 -2.39 -0.02 -1.68 16 44 H 0.10 -1.25 6.14 -2.38 -0.01 -1.26 16 45 H 0.25 -1.97 6.75 -2.91 -0.02 -1.99 16 46 H 0.24 -0.11 8.06 -2.91 -0.02 -0.13 16 47 H 0.08 -0.44 8.10 -2.39 -0.02 -0.46 16 48 H 0.09 -0.71 8.14 -2.38 -0.02 -0.73 16 49 H 0.20 -2.83 7.74 -2.91 -0.02 -2.85 16 50 H 0.25 -3.72 8.06 -2.91 -0.02 -3.75 16 51 H 0.15 -0.16 6.30 -2.91 -0.02 -0.18 16 52 H 0.15 -0.44 4.83 -2.91 -0.01 -0.46 16 Total: 0.00 -32.94 438.56 0.78 -32.16 By element: Atomic # 1 Polarization: -24.40 SS G_CDS: -0.32 Total: -24.72 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 8.82 Total: 14.03 kcal Atomic # 7 Polarization: -2.50 SS G_CDS: -6.91 Total: -9.41 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -2.86 Total: -13.48 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: 2.05 Total: 1.41 kcal Total: -32.94 0.78 -32.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567722_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.954 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds