Wall clock time and date at job start Sun Mar 7 2021 07:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35992 * 117.00102 * 2 1 4 4 C 1.39155 * 120.07450 * 180.02562 * 3 2 1 5 5 O 1.35991 * 120.07316 * 0.02562 * 4 3 2 6 6 C 1.42904 * 117.00377 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47355 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99853 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99933 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47357 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.84114 * 43.80590 * 11 10 9 13 13 C 1.53777 * 113.61596 * 174.99756 * 11 10 9 14 14 C 1.53777 * 87.07815 * 139.98491 * 13 11 10 15 15 H 1.09003 * 113.61823 * 89.20590 * 14 13 11 16 16 N 1.46500 * 113.61604 * 220.02002 * 14 13 11 17 17 C 1.34429 * 126.82322 * 84.99830 * 16 14 13 18 18 N 1.30830 * 108.07794 * 179.97438 * 17 16 14 19 19 C 1.33236 * 109.83161 * 0.02562 * 18 17 16 20 20 N 1.30713 * 108.94661 * 359.75296 * 19 18 17 21 21 C 1.53776 * 113.61625 * 272.50019 * 11 10 9 22 22 C 1.38563 * 119.85389 * 180.02562 * 4 3 2 23 23 C 1.38242 * 120.00125 * 359.97438 * 22 4 3 24 24 C 1.38258 * 120.14563 * 359.97438 * 23 22 4 25 25 C 1.50699 * 119.92693 * 179.97438 * 24 23 22 26 26 O 1.42901 * 109.46830 * 119.99588 * 25 24 23 27 27 Si 1.86298 * 109.46950 * 0.02562 * 25 24 23 28 28 C 1.38240 * 120.14267 * 0.26821 * 24 23 22 29 29 H 1.08999 * 109.46951 * 60.00278 * 1 2 3 30 30 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47107 * 300.00192 * 1 2 3 32 32 H 1.09000 * 109.46714 * 300.00675 * 6 5 4 33 33 H 1.08999 * 109.46710 * 60.00327 * 6 5 4 34 34 H 0.96998 * 120.00225 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47549 * 299.99677 * 10 9 7 36 36 H 1.08999 * 109.47077 * 60.00065 * 10 9 7 37 37 H 1.08993 * 113.61724 * 254.53507 * 13 11 10 38 38 H 1.09000 * 113.61318 * 25.44090 * 13 11 10 39 39 H 1.08002 * 125.96165 * 0.02562 * 17 16 14 40 40 H 1.07997 * 125.52848 * 179.97438 * 19 18 17 41 41 H 1.09002 * 113.61517 * 334.56616 * 21 11 10 42 42 H 1.08998 * 113.61319 * 105.46488 * 21 11 10 43 43 H 1.07999 * 120.00038 * 180.02562 * 22 4 3 44 44 H 1.07994 * 119.92863 * 180.02562 * 23 22 4 45 45 H 1.08991 * 109.47351 * 239.99735 * 25 24 23 46 46 H 0.96708 * 114.00246 * 299.99864 * 26 25 24 47 47 H 1.48506 * 109.99834 * 180.02562 * 27 25 24 48 48 H 1.48502 * 110.00011 * 301.31529 * 27 25 24 49 49 H 1.08000 * 119.99501 * 179.74641 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0016 6 6 5.6004 0.3006 -0.0027 7 6 6.2519 -1.0583 -0.0044 8 8 5.5670 -2.0592 -0.0042 9 7 7.5957 -1.1612 -0.0051 10 6 8.2291 -2.4822 -0.0062 11 6 9.7503 -2.3185 -0.0074 12 1 10.0941 -1.5526 0.6880 13 6 10.5132 -3.6481 0.1142 14 6 11.5039 -3.0835 -0.9175 15 1 12.3289 -2.5277 -0.4720 16 7 11.9501 -4.0705 -1.9039 17 6 11.3239 -4.4100 -3.0440 18 7 12.0420 -5.3237 -3.6450 19 6 13.1286 -5.5924 -2.9221 20 7 13.1195 -4.8463 -1.8489 21 6 10.3550 -2.1908 -1.4155 22 6 4.0603 2.5233 0.0000 23 6 3.3030 3.6798 0.0005 24 6 1.9224 3.6057 0.0000 25 6 1.1016 4.8696 0.0012 26 8 0.2777 4.9035 -1.1659 27 14 2.2365 6.3470 0.0024 28 6 1.2933 2.3748 0.0045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 5.9058 0.8508 -0.8926 33 1 5.9073 0.8499 0.8873 34 1 8.1435 -0.3607 -0.0049 35 1 7.9233 -3.0325 0.8836 36 1 7.9224 -3.0314 -0.8963 37 1 10.9528 -3.8109 1.0982 38 1 9.9503 -4.5090 -0.2466 39 1 10.3912 -3.9996 -3.4018 40 1 13.8945 -6.3078 -3.1826 41 1 9.7489 -2.6533 -2.1946 42 1 10.6670 -1.1771 -1.6665 43 1 5.1386 2.5840 -0.0008 44 1 3.7908 4.6433 0.0005 45 1 0.4725 4.8934 0.8909 46 1 0.7719 4.8849 -1.9970 47 1 1.4392 7.5999 0.0042 48 1 3.1212 6.3069 1.1945 49 1 0.2147 2.3197 0.0082 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567722_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:30:53 Heat of formation + Delta-G solvation = 18.672414 kcal Electronic energy + Delta-G solvation = -32659.201166 eV Core-core repulsion = 27978.422656 eV Total energy + Delta-G solvation = -4680.778510 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.12544 -41.80062 -40.98079 -40.08657 -39.22976 -38.84070 -36.91785 -35.80586 -33.50351 -32.21031 -32.03964 -31.46186 -30.35138 -28.55981 -28.04697 -26.92133 -26.16509 -25.02525 -23.51737 -22.96430 -22.56730 -22.31518 -21.67748 -20.40748 -19.76132 -18.81480 -18.43051 -18.14850 -17.73165 -17.53422 -17.18969 -17.03099 -16.82791 -16.69506 -16.21815 -16.07812 -15.99365 -15.79250 -15.66184 -15.60196 -15.22934 -15.11902 -14.64326 -14.53012 -14.29677 -13.77226 -13.69250 -13.59717 -13.55778 -13.42263 -13.32151 -12.87046 -12.63473 -12.53184 -12.24372 -12.14773 -12.05703 -11.99037 -11.79233 -11.72511 -11.63519 -11.04812 -10.97223 -10.85011 -10.55354 -10.42860 -10.17589 -9.77609 -8.89819 -4.95944 0.18129 0.29075 0.62814 1.34803 1.35672 1.49384 1.53739 1.67775 1.96143 2.01274 2.31529 2.57739 2.59611 3.12187 3.30619 3.44468 3.49816 3.51112 3.62870 3.68331 3.71787 3.87070 3.88785 3.94625 4.07467 4.13749 4.14929 4.15701 4.19437 4.29837 4.30210 4.31656 4.37460 4.50441 4.59167 4.63168 4.65173 4.66453 4.71467 4.79115 4.89914 4.95485 5.01761 5.13627 5.15063 5.33025 5.38505 5.41952 5.45132 5.60707 5.89336 5.98378 6.44061 6.56737 6.78522 7.08881 7.18388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.085 3.915 5 O -0.316 6.316 6 C 0.033 3.967 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.132 3.868 11 C -0.096 4.096 12 H 0.135 0.865 13 C -0.138 4.138 14 C 0.120 3.880 15 H 0.133 0.867 16 N -0.369 5.369 17 C 0.255 3.745 18 N -0.582 5.582 19 C 0.188 3.812 20 N -0.353 5.353 21 C -0.128 4.128 22 C -0.158 4.158 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.077 4.077 26 O -0.558 6.558 27 Si 0.789 3.211 28 C -0.153 4.153 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.424 0.576 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.235 0.765 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.103 0.897 46 H 0.395 0.605 47 H -0.304 1.304 48 H -0.278 1.278 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 8.641 -0.399 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.045 4.045 7 C 0.296 3.704 8 O -0.455 6.455 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.115 4.115 12 H 0.152 0.848 13 C -0.178 4.178 14 C 0.019 3.981 15 H 0.151 0.849 16 N -0.159 5.159 17 C -0.041 4.041 18 N -0.310 5.310 19 C -0.115 4.115 20 N -0.181 5.181 21 C -0.167 4.167 22 C -0.176 4.176 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.187 4.187 26 O -0.366 6.366 27 Si 0.694 3.306 28 C -0.172 4.172 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.265 0.735 40 H 0.251 0.749 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.196 0.804 44 H 0.176 0.824 45 H 0.120 0.880 46 H 0.245 0.755 47 H -0.233 1.233 48 H -0.204 1.204 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.889 8.125 0.762 9.039 hybrid contribution -0.722 -0.439 0.492 0.977 sum 3.167 7.686 1.253 8.407 Atomic orbital electron populations 1.23271 0.76885 1.05164 1.02033 1.86186 1.22925 1.26702 1.89111 1.18685 0.90023 0.85530 1.02741 1.18577 0.88116 0.86605 1.02702 1.86224 1.18414 1.29011 1.89284 1.22814 0.79212 0.95278 1.07155 1.20569 0.83170 0.90761 0.75856 1.90790 1.64303 1.40310 1.50128 1.45589 1.04943 1.10580 1.74848 1.21305 0.91559 0.84229 1.02039 1.22505 0.91922 0.98729 0.98393 0.84752 1.23441 0.96355 0.97975 0.99982 1.23391 0.97332 0.88402 0.89020 0.84892 1.50780 1.15655 1.30848 1.18613 1.26600 0.99901 0.93116 0.84511 1.70576 1.07687 1.19113 1.33608 1.26511 0.97182 0.99077 0.88694 1.77989 1.04862 1.11015 1.24241 1.23608 0.93965 1.01464 0.97620 1.21395 1.02348 0.89198 1.04662 1.21020 0.92233 0.99096 1.00441 1.20200 0.94557 0.94748 1.02503 1.25280 0.99819 1.02593 0.90964 1.86464 1.36811 1.96947 1.16390 0.93634 0.78266 0.72313 0.86361 1.20995 1.00456 0.90650 1.05131 0.91669 0.87106 0.92014 0.85061 0.85591 0.73734 0.92381 0.91850 0.89472 0.90092 0.73470 0.74912 0.88118 0.86838 0.80403 0.82355 0.87973 0.75455 1.23299 1.20431 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.51 10.28 -79.59 -0.82 -4.33 16 3 C 0.08 0.54 6.70 22.57 0.15 0.69 16 4 C 0.09 0.34 6.70 22.57 0.15 0.49 16 5 O -0.32 -2.10 9.45 -67.03 -0.63 -2.73 16 6 C 0.03 -0.18 5.22 71.24 0.37 0.20 16 7 C 0.51 0.10 7.91 87.66 0.69 0.79 16 8 O -0.58 -7.85 16.50 16.00 0.26 -7.59 16 9 N -0.70 6.49 5.56 -463.07 -2.57 3.92 16 10 C 0.13 -0.99 5.51 86.38 0.48 -0.52 16 11 C -0.10 1.30 3.75 -10.27 -0.04 1.27 16 12 H 0.13 -2.39 8.14 -2.38 -0.02 -2.41 16 13 C -0.14 1.16 7.44 31.12 0.23 1.39 16 14 C 0.12 -0.92 5.07 45.52 0.23 -0.69 16 15 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 16 N -0.37 -0.12 3.83 -328.94 -1.26 -1.38 16 17 C 0.25 0.02 11.87 180.36 2.14 2.16 16 18 N -0.58 -3.86 11.19 -204.01 -2.28 -6.15 16 19 C 0.19 1.07 13.03 180.77 2.36 3.42 16 20 N -0.35 -2.36 12.70 -61.25 -0.78 -3.14 16 21 C -0.13 1.79 7.00 31.12 0.22 2.01 16 22 C -0.16 0.70 9.04 22.35 0.20 0.90 16 23 C -0.11 0.52 8.66 22.28 0.19 0.71 16 24 C -0.12 0.09 5.39 -19.86 -0.11 -0.01 16 25 C -0.08 0.14 2.82 71.24 0.20 0.35 16 26 O -0.56 0.43 12.77 -148.98 -1.90 -1.47 16 27 Si 0.79 -3.96 29.78 68.60 2.04 -1.92 16 28 C -0.15 -0.49 8.60 22.35 0.19 -0.30 16 29 H 0.06 -0.01 7.67 -2.39 -0.02 -0.03 16 30 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.06 0.01 7.65 -2.39 -0.02 -0.01 16 32 H 0.13 -1.72 7.66 -2.39 -0.02 -1.74 16 33 H 0.13 -1.54 7.66 -2.39 -0.02 -1.56 16 34 H 0.42 -7.58 8.47 -92.71 -0.79 -8.37 16 35 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 -0.29 7.84 -2.39 -0.02 -0.31 16 37 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.08 -0.41 8.10 -2.39 -0.02 -0.43 16 39 H 0.25 -2.20 6.75 -2.91 -0.02 -2.22 16 40 H 0.23 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.10 -1.42 6.14 -2.39 -0.01 -1.43 16 42 H 0.11 -1.99 8.14 -2.39 -0.02 -2.01 16 43 H 0.18 -2.36 6.30 -2.91 -0.02 -2.38 16 44 H 0.16 -1.66 4.87 -2.91 -0.01 -1.67 16 45 H 0.10 -0.02 7.96 -2.39 -0.02 -0.03 16 46 H 0.40 -3.52 8.70 -74.05 -0.64 -4.16 16 47 H -0.30 -1.01 7.11 99.48 0.71 -0.31 16 48 H -0.28 0.43 7.11 99.48 0.71 1.14 16 49 H 0.14 0.31 6.30 -2.91 -0.02 0.29 16 Total: 0.00 -41.14 409.78 0.46 -40.68 By element: Atomic # 1 Polarization: -29.53 SS G_CDS: -0.37 Total: -29.90 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 8.77 Total: 14.01 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -6.89 Total: -6.75 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -3.09 Total: -16.12 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.04 Total: -1.92 kcal Total: -41.14 0.46 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567722_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -41.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds