Wall clock time and date at job start Sun Mar 7 2021 07:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47240 * 2 1 4 4 C 1.50703 * 109.47152 * 120.00127 * 2 1 3 5 5 C 1.34245 * 126.49618 * 254.97680 * 4 2 1 6 6 N 1.36835 * 109.93172 * 180.02562 * 5 4 2 7 7 C 1.46508 * 125.05637 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47268 * 265.02687 * 7 6 5 9 9 O 1.21280 * 119.99790 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00036 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.90752 * 316.24725 * 12 11 10 14 14 C 1.53784 * 113.61673 * 87.50094 * 12 11 10 15 15 C 1.53778 * 87.08081 * 139.98135 * 14 12 11 16 16 H 1.09004 * 113.61886 * 89.12045 * 15 14 12 17 17 N 1.46506 * 113.68980 * 220.00924 * 15 14 12 18 18 C 1.34424 * 126.82193 * 12.24454 * 17 15 14 19 19 N 1.30834 * 108.07549 * 179.89382 * 18 17 15 20 20 C 1.33238 * 109.82945 * 0.38097 * 19 18 17 21 21 N 1.30713 * 108.94736 * 359.76325 * 20 19 18 22 22 C 1.53778 * 87.08449 * 334.56700 * 15 14 12 23 23 C 1.37684 * 109.88200 * 0.22932 * 6 5 4 24 24 C 1.39084 * 133.51395 * 180.39965 * 23 6 5 25 25 C 1.37791 * 119.77844 * 179.64854 * 24 23 6 26 26 C 1.38784 * 120.66556 * 359.75049 * 25 24 23 27 27 C 1.36657 * 120.53029 * 0.02562 * 26 25 24 28 28 C 1.39589 * 119.76677 * 359.97438 * 27 26 25 29 29 H 0.96701 * 113.99844 * 60.00569 * 1 2 3 30 30 H 1.09004 * 109.47315 * 239.99359 * 2 1 3 31 31 H 1.48501 * 109.99667 * 298.68215 * 3 2 1 32 32 H 1.48498 * 109.99834 * 59.99857 * 3 2 1 33 33 H 1.07994 * 125.03124 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46450 * 145.02468 * 7 6 5 35 35 H 1.08995 * 109.47033 * 25.02925 * 7 6 5 36 36 H 0.97004 * 119.99934 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47072 * 59.99516 * 11 10 8 38 38 H 1.09007 * 109.46579 * 299.99681 * 11 10 8 39 39 H 1.08993 * 113.61313 * 254.52732 * 14 12 11 40 40 H 1.09000 * 113.61578 * 25.43464 * 14 12 11 41 41 H 1.08004 * 125.96425 * 0.03950 * 18 17 15 42 42 H 1.08001 * 125.52566 * 179.72180 * 20 19 18 43 43 H 1.08998 * 113.61879 * 270.88747 * 22 15 14 44 44 H 1.08999 * 113.61887 * 139.97854 * 22 15 14 45 45 H 1.07997 * 120.10721 * 359.39728 * 24 23 6 46 46 H 1.08001 * 119.66485 * 179.72723 * 25 24 23 47 47 H 1.08002 * 119.73267 * 180.02562 * 26 25 24 48 48 H 1.08008 * 120.11750 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4613 -0.1376 2.3228 6 7 2.8036 -1.0991 3.2342 7 6 3.4094 -0.8404 4.5429 8 6 4.9076 -0.9625 4.4359 9 8 5.4191 -1.2379 3.3713 10 7 5.6791 -0.7656 5.5233 11 6 7.1356 -0.8848 5.4194 12 6 7.7681 -0.6158 6.7863 13 1 7.3291 0.2422 7.2955 14 6 7.8770 -1.8683 7.6719 15 6 9.2591 -1.3484 8.1012 16 1 9.2278 -0.6908 8.9699 17 7 10.2727 -2.3996 8.2198 18 6 10.1739 -3.6670 7.7828 19 7 11.2883 -4.2860 8.0773 20 6 12.1154 -3.4526 8.7070 21 7 11.5382 -2.2851 8.8180 22 6 9.3056 -0.5965 6.7606 23 6 2.4994 -2.3460 2.7361 24 6 2.6303 -3.6362 3.2388 25 6 2.2167 -4.7108 2.4820 26 6 1.6649 -4.5194 1.2230 27 6 1.5228 -3.2602 0.7115 28 6 1.9350 -2.1571 1.4610 29 1 -0.3933 0.4416 -0.7651 30 1 1.7924 -0.5139 -0.8899 31 1 1.5879 2.4585 -1.2242 32 1 1.5615 2.4678 1.2085 33 1 2.5972 0.9247 2.4616 34 1 3.0364 -1.5661 5.2656 35 1 3.1494 0.1659 4.8711 36 1 5.2700 -0.5449 6.3747 37 1 7.5089 -0.1592 4.6967 38 1 7.3952 -1.8913 5.0911 39 1 7.1492 -1.8943 8.4828 40 1 7.9170 -2.8000 7.1076 41 1 9.3239 -4.0984 7.2749 42 1 13.1024 -3.7016 9.0679 43 1 9.7360 -1.1804 5.9470 44 1 9.7309 0.4043 6.8357 45 1 3.0585 -3.7954 4.2174 46 1 2.3233 -5.7121 2.8724 47 1 1.3454 -5.3725 0.6429 48 1 1.0929 -3.1189 -0.2692 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567722_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:32:20 Heat of formation + Delta-G solvation = 131.769514 kcal Electronic energy + Delta-G solvation = -31889.189182 eV Core-core repulsion = 27528.801122 eV Total energy + Delta-G solvation = -4360.388060 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.13296 -42.50713 -40.85689 -39.90266 -38.08165 -37.70946 -35.77073 -34.20509 -33.45197 -32.19561 -31.52321 -30.28286 -29.76014 -28.16992 -26.92983 -25.79099 -24.87690 -23.71022 -22.96985 -22.69706 -22.30292 -21.62200 -20.57426 -20.37434 -18.80510 -18.46867 -18.15950 -17.96441 -17.68891 -17.08861 -16.78226 -16.51828 -16.41192 -16.16096 -15.86039 -15.70945 -15.48231 -15.19794 -15.01708 -14.80561 -14.73115 -14.53662 -14.38239 -14.11613 -13.70784 -13.59971 -13.51439 -13.36701 -13.18293 -12.86632 -12.71986 -12.54730 -12.48283 -12.23444 -12.08319 -11.79092 -11.71497 -11.64785 -11.10526 -11.04039 -10.85950 -10.57729 -10.51634 -10.34630 -10.13293 -9.14441 -8.61912 -4.88154 0.15489 0.62006 0.65765 1.33175 1.35482 1.45108 1.51960 1.60153 1.65209 1.93404 1.95328 2.24589 2.95887 3.11406 3.30240 3.43485 3.51623 3.54742 3.64183 3.66510 3.78318 3.81640 3.85905 3.86628 4.03174 4.13291 4.17253 4.19438 4.24375 4.29084 4.31643 4.41992 4.58288 4.58709 4.63109 4.71257 4.72292 4.79478 4.80743 4.88909 4.91450 4.95341 5.15512 5.15528 5.34849 5.41251 5.45884 5.52486 5.67350 5.74271 5.76545 5.88501 6.19035 6.25985 6.52340 6.67446 7.08073 7.19637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.053 4.053 3 Si 0.762 3.238 4 C -0.182 4.182 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.492 3.508 9 O -0.569 6.569 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.096 4.096 13 H 0.133 0.867 14 C -0.129 4.129 15 C 0.119 3.881 16 H 0.132 0.868 17 N -0.369 5.369 18 C 0.255 3.745 19 N -0.582 5.582 20 C 0.188 3.812 21 N -0.353 5.353 22 C -0.137 4.137 23 C 0.091 3.909 24 C -0.132 4.132 25 C -0.107 4.107 26 C -0.154 4.154 27 C -0.088 4.088 28 C -0.119 4.119 29 H 0.389 0.611 30 H 0.072 0.928 31 H -0.285 1.285 32 H -0.276 1.276 33 H 0.193 0.807 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.422 0.578 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.249 0.751 42 H 0.235 0.765 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.147 0.853 47 H 0.137 0.863 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 3.825 4.899 6.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.162 4.162 3 Si 0.664 3.336 4 C -0.190 4.190 5 C -0.052 4.052 6 N -0.149 5.149 7 C -0.039 4.039 8 C 0.277 3.723 9 O -0.447 6.447 10 N -0.362 5.362 11 C 0.010 3.990 12 C -0.116 4.116 13 H 0.151 0.849 14 C -0.167 4.167 15 C 0.017 3.983 16 H 0.150 0.850 17 N -0.159 5.159 18 C -0.041 4.041 19 N -0.310 5.310 20 C -0.115 4.115 21 N -0.181 5.181 22 C -0.176 4.176 23 C -0.014 4.014 24 C -0.152 4.152 25 C -0.126 4.126 26 C -0.173 4.173 27 C -0.107 4.107 28 C -0.123 4.123 29 H 0.239 0.761 30 H 0.090 0.910 31 H -0.211 1.211 32 H -0.203 1.203 33 H 0.210 0.790 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.265 0.735 42 H 0.251 0.749 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.155 0.845 46 H 0.165 0.835 47 H 0.155 0.845 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.089 4.584 5.282 7.078 hybrid contribution -1.129 -0.231 -0.563 1.282 sum -2.218 4.353 4.719 6.792 Atomic orbital electron populations 1.86591 1.19184 1.80703 1.50501 1.24365 0.83365 1.11627 0.96807 0.94110 0.90443 0.71334 0.77665 1.19762 1.10099 0.91542 0.97547 1.21912 0.99806 0.95028 0.88469 1.43423 1.52154 1.03731 1.15567 1.22006 0.89173 1.08874 0.83805 1.21308 0.90310 0.76620 0.84078 1.90816 1.75676 1.48325 1.29919 1.45753 1.06897 1.71276 1.12309 1.21250 0.79228 1.01550 0.96928 1.22503 0.94563 0.99748 0.94739 0.84911 1.23602 0.93348 0.98972 1.00776 1.23398 0.85628 0.88782 1.00452 0.85047 1.50781 1.12299 1.11009 1.41819 1.26589 0.98660 0.82581 0.96297 1.70579 1.03660 1.35129 1.21588 1.26516 1.01649 0.86470 0.96838 1.77990 0.94364 1.24086 1.21661 1.23431 0.96556 1.01852 0.95790 1.18412 1.01610 0.87077 0.94264 1.20261 1.04627 0.88854 1.01501 1.21152 0.98078 0.99085 0.94301 1.20925 1.02342 0.96941 0.97076 1.20442 0.99116 0.91667 0.99468 1.19364 1.04126 0.93667 0.95175 0.76115 0.90995 1.21140 1.20262 0.79012 0.83752 0.82339 0.73998 0.92186 0.92133 0.87102 0.88172 0.73506 0.74905 0.90077 0.89475 0.84525 0.83507 0.84497 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.52 12.86 -148.98 -1.92 -5.44 16 2 C -0.05 -0.22 3.05 71.24 0.22 -0.01 16 3 Si 0.76 -0.34 30.79 68.60 2.11 1.77 16 4 C -0.18 -1.40 5.61 -18.62 -0.10 -1.50 16 5 C 0.07 0.24 9.89 83.00 0.82 1.06 16 6 N -0.47 -0.97 2.27 -519.98 -1.18 -2.15 16 7 C 0.09 -0.71 6.48 85.63 0.55 -0.15 16 8 C 0.49 -1.97 7.90 87.66 0.69 -1.28 16 9 O -0.57 -4.51 16.42 -3.03 -0.05 -4.56 16 10 N -0.71 8.26 5.56 -463.07 -2.57 5.69 16 11 C 0.13 -1.27 5.51 86.38 0.48 -0.80 16 12 C -0.10 1.40 3.75 -10.27 -0.04 1.36 16 13 H 0.13 -2.46 8.14 -2.39 -0.02 -2.48 16 14 C -0.13 1.86 7.00 31.12 0.22 2.07 16 15 C 0.12 -0.96 5.07 45.51 0.23 -0.73 16 16 H 0.13 -1.16 8.14 -2.38 -0.02 -1.18 16 17 N -0.37 0.00 3.83 -328.93 -1.26 -1.26 16 18 C 0.25 -0.06 11.87 180.36 2.14 2.08 16 19 N -0.58 -3.68 11.19 -204.00 -2.28 -5.97 16 20 C 0.19 1.02 13.03 180.77 2.36 3.37 16 21 N -0.35 -2.27 12.70 -61.25 -0.78 -3.04 16 22 C -0.14 1.26 7.44 31.12 0.23 1.49 16 23 C 0.09 0.67 6.80 39.03 0.27 0.94 16 24 C -0.13 -0.58 10.00 22.37 0.22 -0.36 16 25 C -0.11 -0.44 10.01 22.29 0.22 -0.22 16 26 C -0.15 -0.95 9.97 22.03 0.22 -0.73 16 27 C -0.09 -0.84 10.05 22.23 0.22 -0.61 16 28 C -0.12 -1.27 6.35 -20.20 -0.13 -1.40 16 29 H 0.39 -0.85 8.74 -74.06 -0.65 -1.50 16 30 H 0.07 0.21 7.96 -2.39 -0.02 0.19 16 31 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 32 H -0.28 -0.83 7.04 99.48 0.70 -0.13 16 33 H 0.19 -0.60 6.30 -2.91 -0.02 -0.61 16 34 H 0.14 -1.95 8.14 -2.39 -0.02 -1.97 16 35 H 0.16 -2.49 8.12 -2.39 -0.02 -2.51 16 36 H 0.42 -8.14 8.47 -92.70 -0.79 -8.92 16 37 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.06 -0.38 7.84 -2.38 -0.02 -0.39 16 39 H 0.11 -1.94 8.14 -2.39 -0.02 -1.96 16 40 H 0.10 -1.45 6.15 -2.39 -0.01 -1.47 16 41 H 0.25 -2.28 6.75 -2.91 -0.02 -2.30 16 42 H 0.23 -0.17 8.06 -2.91 -0.02 -0.20 16 43 H 0.08 -0.48 8.10 -2.39 -0.02 -0.50 16 44 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 45 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 46 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 47 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 48 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 Total: 0.00 -37.50 407.11 0.51 -36.99 By element: Atomic # 1 Polarization: -26.23 SS G_CDS: -0.39 Total: -26.62 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 8.82 Total: 4.59 kcal Atomic # 7 Polarization: 1.34 SS G_CDS: -8.07 Total: -6.73 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.97 Total: -10.00 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.11 Total: 1.77 kcal Total: -37.50 0.51 -36.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567722_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.760 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds