Wall clock time and date at job start Sun Mar 7 2021 09:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35660 * 116.99705 * 2 1 4 4 C 1.38400 * 120.12284 * 0.22604 * 3 2 1 5 5 C 1.38730 * 120.03113 * 180.28077 * 4 3 2 6 6 O 1.35717 * 119.86137 * 179.76842 * 5 4 3 7 7 C 1.42900 * 117.00046 * 359.97438 * 6 5 4 8 8 C 1.39142 * 120.27120 * 359.74247 * 5 4 3 9 9 C 1.50706 * 119.87689 * 180.02562 * 8 5 4 10 10 O 1.42896 * 109.47052 * 74.98278 * 9 8 5 11 11 Si 1.86300 * 109.46762 * 194.97910 * 9 8 5 12 12 C 1.37587 * 120.24413 * 0.02562 * 8 5 4 13 13 C 1.39811 * 119.96060 * 359.97438 * 12 8 5 14 14 C 1.47304 * 120.13384 * 179.97438 * 13 12 8 15 15 O 1.21622 * 120.00189 * 180.02562 * 14 13 12 16 16 N 1.34775 * 119.99934 * 0.02562 * 14 13 12 17 17 C 1.46501 * 120.00084 * 179.97438 * 16 14 13 18 18 H 1.08996 * 112.84790 * 23.80471 * 17 16 14 19 19 C 1.53775 * 113.61482 * 155.00087 * 17 16 14 20 20 C 1.53782 * 87.08076 * 89.11719 * 19 17 16 21 21 H 1.09001 * 113.61481 * 270.80186 * 20 19 17 22 22 N 1.46502 * 113.61472 * 139.97875 * 20 19 17 23 23 C 1.35315 * 125.87191 * 276.53444 * 22 20 19 24 24 C 1.35344 * 106.17731 * 179.73450 * 23 22 20 25 25 N 1.33776 * 106.49718 * 359.97438 * 24 23 22 26 26 N 1.28633 * 108.88517 * 359.97438 * 25 24 23 27 27 C 1.53781 * 87.17369 * 25.39114 * 20 19 17 28 28 H 1.09004 * 109.47160 * 60.00315 * 1 2 3 29 29 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47708 * 300.00697 * 1 2 3 31 31 H 1.07997 * 119.98325 * 0.04903 * 4 3 2 32 32 H 1.09000 * 109.46968 * 60.00475 * 7 6 5 33 33 H 1.08998 * 109.46760 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47154 * 299.99990 * 7 6 5 35 35 H 1.08996 * 109.47105 * 314.98177 * 9 8 5 36 36 H 0.96707 * 114.00182 * 299.99840 * 10 9 8 37 37 H 1.48495 * 110.00130 * 298.67833 * 11 9 8 38 38 H 1.48500 * 110.00169 * 60.00282 * 11 9 8 39 39 H 1.07995 * 120.01689 * 179.97438 * 12 8 5 40 40 H 0.96996 * 119.99763 * 0.02562 * 16 14 13 41 41 H 1.08998 * 113.61740 * 334.57092 * 19 17 16 42 42 H 1.09000 * 113.61657 * 203.66282 * 19 17 16 43 43 H 1.07998 * 126.90946 * 359.75328 * 23 22 20 44 44 H 1.08000 * 126.75551 * 180.02562 * 24 23 22 45 45 H 1.09001 * 113.61427 * 89.15588 * 27 20 19 46 46 H 1.08995 * 113.61332 * 220.06100 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2935 2.3711 0.0047 5 6 1.9252 3.6062 -0.0012 6 8 1.1850 4.7437 -0.0013 7 6 -0.2360 4.5931 0.0043 8 6 3.3144 3.6834 -0.0064 9 6 3.9914 5.0299 -0.0122 10 8 3.8983 5.6154 1.2879 11 14 5.7846 4.8212 -0.4723 12 6 4.0724 2.5352 -0.0064 13 6 3.4461 1.2852 -0.0005 14 6 4.2539 0.0533 -0.0009 15 8 3.7066 -1.0328 0.0038 16 7 5.5994 0.1299 -0.0066 17 6 6.4028 -1.0952 -0.0065 18 1 5.8648 -1.9542 -0.4074 19 6 7.8060 -0.9117 -0.6081 20 6 8.2781 -0.5386 0.8071 21 1 8.1945 0.5253 1.0290 22 7 9.5906 -1.0903 1.1525 23 6 9.8280 -2.3366 1.6228 24 6 11.1670 -2.4242 1.7996 25 7 11.6767 -1.2429 1.4331 26 7 10.7170 -0.4750 1.0539 27 6 7.1003 -1.3729 1.3376 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2149 2.3165 0.0092 32 1 -0.5399 4.0461 0.8968 33 1 -0.7056 5.5768 0.0040 34 1 -0.5464 4.0417 -0.8831 35 1 3.5030 5.6790 -0.7389 36 1 2.9910 5.7535 1.5930 37 1 6.4693 3.9641 0.5285 38 1 5.8952 4.2131 -1.8225 39 1 5.1504 2.5994 -0.0109 40 1 6.0359 0.9961 -0.0099 41 1 7.8714 -0.0898 -1.3210 42 1 8.2439 -1.8360 -0.9848 43 1 9.0963 -3.1066 1.8176 44 1 11.7162 -3.2798 2.1641 45 1 7.3449 -2.4236 1.4937 46 1 6.5968 -0.9229 2.1931 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_12297780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:43:18 Heat of formation + Delta-G solvation = 32.308902 kcal Electronic energy + Delta-G solvation = -32681.263929 eV Core-core repulsion = 28156.614360 eV Total energy + Delta-G solvation = -4524.649569 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.152 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.29800 -42.28043 -41.24981 -40.24658 -39.38417 -38.44065 -37.05013 -35.27883 -33.56437 -32.33610 -32.04089 -31.66056 -29.05745 -28.30495 -27.14840 -26.89367 -26.12885 -24.84572 -23.65900 -23.29594 -22.71014 -21.82294 -20.73087 -20.09879 -19.20460 -18.62356 -18.57210 -17.83965 -17.43761 -17.40233 -17.23080 -16.89805 -16.66735 -16.45900 -16.13673 -15.95867 -15.87026 -15.80687 -15.42897 -15.33412 -14.91891 -14.41916 -14.29038 -14.00809 -13.97363 -13.80987 -13.64822 -13.47001 -13.34090 -12.77574 -12.70143 -12.61054 -12.59567 -12.40779 -12.23730 -12.09021 -11.78606 -11.70602 -11.41754 -11.22002 -11.05046 -10.95116 -10.40253 -10.36301 -10.05643 -9.32524 -4.82403 -0.43804 -0.05791 0.59372 1.34013 1.35825 1.53366 1.58318 1.65481 1.82461 1.87036 1.96816 2.05846 2.43343 2.87034 3.07958 3.27965 3.36680 3.44232 3.53914 3.57464 3.63155 3.63682 3.92473 3.95792 4.03806 4.11634 4.15108 4.20170 4.22823 4.23002 4.26062 4.27325 4.34768 4.40004 4.45855 4.57112 4.59425 4.64013 4.65955 4.68503 4.73170 4.80915 4.81031 4.90282 5.13371 5.22032 5.29134 5.63781 5.89769 6.14019 6.26844 6.62708 7.01246 7.48303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.302 6.302 3 C 0.219 3.781 4 C -0.304 4.304 5 C 0.212 3.788 6 O -0.312 6.312 7 C 0.011 3.989 8 C -0.200 4.200 9 C -0.076 4.076 10 O -0.546 6.546 11 Si 0.786 3.214 12 C -0.012 4.012 13 C -0.230 4.230 14 C 0.570 3.430 15 O -0.550 6.550 16 N -0.711 5.711 17 C 0.130 3.870 18 H 0.116 0.884 19 C -0.138 4.138 20 C 0.106 3.894 21 H 0.135 0.865 22 N -0.277 5.277 23 C -0.036 4.036 24 C -0.065 4.065 25 N -0.316 5.316 26 N -0.128 5.128 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.373 0.627 37 H -0.270 1.270 38 H -0.258 1.258 39 H 0.143 0.857 40 H 0.405 0.595 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.214 0.786 45 H 0.129 0.871 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 2.165 -0.937 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.213 6.213 3 C 0.170 3.830 4 C -0.324 4.324 5 C 0.164 3.836 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.201 4.201 9 C -0.184 4.184 10 O -0.353 6.353 11 Si 0.686 3.314 12 C -0.031 4.031 13 C -0.234 4.234 14 C 0.359 3.641 15 O -0.428 6.428 16 N -0.364 5.364 17 C 0.023 3.977 18 H 0.134 0.866 19 C -0.177 4.177 20 C 0.005 3.995 21 H 0.152 0.848 22 N -0.070 5.070 23 C -0.187 4.187 24 C -0.223 4.223 25 N -0.181 5.181 26 N -0.106 5.106 27 C -0.182 4.182 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.222 0.778 37 H -0.196 1.196 38 H -0.183 1.183 39 H 0.160 0.840 40 H 0.242 0.758 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.246 0.754 44 H 0.231 0.769 45 H 0.147 0.853 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.661 2.167 -1.596 7.184 hybrid contribution -2.394 -1.179 0.570 2.729 sum -9.055 0.988 -1.026 9.166 Atomic orbital electron populations 1.23516 0.76213 1.05995 1.02783 1.86359 1.23448 1.25564 1.85903 1.18917 0.90763 0.85056 0.88307 1.21484 1.02261 0.90593 1.18021 1.18822 0.90345 0.85407 0.89069 1.86050 1.21506 1.28156 1.86633 1.23530 0.75606 1.06338 1.02751 1.19681 0.91100 0.97091 1.12248 1.25284 1.14513 0.89993 0.88648 1.86682 1.33051 1.83138 1.32410 0.92175 0.74262 0.87730 0.77233 1.20842 0.99338 0.90014 0.92880 1.19126 0.91256 0.93514 1.19471 1.17951 0.82189 0.88411 0.75512 1.90827 1.72042 1.29753 1.50171 1.45570 1.05340 1.09642 1.75852 1.21636 0.90762 0.88703 0.96551 0.86636 1.23809 0.93633 1.05194 0.95032 1.23774 0.75827 1.00995 0.98889 0.84760 1.47717 1.08264 1.10393 1.40652 1.24242 0.99492 0.90167 1.04821 1.24244 0.93315 0.98335 1.06407 1.75089 1.23989 1.03835 1.15154 1.78274 0.88163 1.22511 1.21686 1.24009 0.92653 1.02627 0.98945 0.90875 0.86676 0.90879 0.81256 0.91091 0.85578 0.91269 0.89761 0.77790 1.19646 1.18341 0.83969 0.75771 0.88421 0.86524 0.75366 0.76898 0.85297 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.30 -2.01 8.56 -68.80 -0.59 -2.60 16 3 C 0.22 1.16 6.70 22.82 0.15 1.31 16 4 C -0.30 -0.03 8.01 22.43 0.18 0.15 16 5 C 0.21 0.14 6.62 22.60 0.15 0.29 16 6 O -0.31 0.78 9.36 -90.39 -0.85 -0.06 16 7 C 0.01 -0.11 9.80 113.37 1.11 1.01 16 8 C -0.20 -0.42 5.28 -19.80 -0.10 -0.52 16 9 C -0.08 0.01 2.32 71.24 0.17 0.17 16 10 O -0.55 -0.81 12.65 -148.98 -1.89 -2.69 16 11 Si 0.79 -1.80 30.39 68.60 2.08 0.29 16 12 C -0.01 -0.03 8.14 22.50 0.18 0.15 16 13 C -0.23 -1.32 5.89 -20.00 -0.12 -1.44 16 14 C 0.57 3.96 7.76 86.63 0.67 4.63 16 15 O -0.55 -7.54 14.75 16.86 0.25 -7.30 16 16 N -0.71 0.15 5.21 -443.14 -2.31 -2.16 16 17 C 0.13 -0.43 4.33 45.58 0.20 -0.23 16 18 H 0.12 -0.10 7.46 -2.39 -0.02 -0.12 16 19 C -0.14 0.74 7.63 31.12 0.24 0.97 16 20 C 0.11 -0.36 4.82 45.52 0.22 -0.14 16 21 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 22 N -0.28 -0.69 3.53 -324.66 -1.15 -1.83 16 23 C -0.04 0.05 10.78 83.49 0.90 0.95 16 24 C -0.07 -0.23 12.05 83.73 1.01 0.78 16 25 N -0.32 -3.89 12.41 -58.26 -0.72 -4.61 16 26 N -0.13 -1.41 13.17 37.02 0.49 -0.92 16 27 C -0.14 0.84 7.25 31.18 0.23 1.07 16 28 H 0.07 -0.48 7.67 -2.38 -0.02 -0.49 16 29 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.07 -0.47 7.65 -2.39 -0.02 -0.49 16 31 H 0.17 -0.98 4.50 -2.91 -0.01 -0.99 16 32 H 0.07 -0.77 7.65 -2.39 -0.02 -0.78 16 33 H 0.13 -1.57 8.14 -2.39 -0.02 -1.59 16 34 H 0.07 -0.73 7.65 -2.39 -0.02 -0.75 16 35 H 0.08 -0.16 7.82 -2.39 -0.02 -0.18 16 36 H 0.37 -0.90 8.58 -74.05 -0.64 -1.54 16 37 H -0.27 -0.19 6.81 99.48 0.68 0.49 16 38 H -0.26 0.05 7.11 99.48 0.71 0.76 16 39 H 0.14 -0.07 3.24 -2.91 -0.01 -0.08 16 40 H 0.41 -1.52 6.72 -92.71 -0.62 -2.14 16 41 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.23 -2.44 6.74 -2.91 -0.02 -2.46 16 44 H 0.21 -0.69 8.06 -2.91 -0.02 -0.71 16 45 H 0.13 -1.28 6.33 -2.39 -0.02 -1.29 16 46 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: 0.00 -28.38 380.03 1.43 -26.94 By element: Atomic # 1 Polarization: -15.10 SS G_CDS: -0.18 Total: -15.28 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.29 Total: 10.23 kcal Atomic # 7 Polarization: -5.84 SS G_CDS: -3.69 Total: -9.53 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -3.07 Total: -12.65 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.08 Total: 0.29 kcal Total: -28.38 1.43 -26.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_12297780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.254 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds