Wall clock time and date at job start Sun Mar 7 2021 09:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47511 * 2 1 4 4 C 1.50699 * 109.46971 * 120.00474 * 2 1 3 5 5 C 1.35088 * 126.07284 * 255.13592 * 4 2 1 6 6 N 1.35039 * 107.97784 * 180.27994 * 5 4 2 7 7 C 1.46496 * 125.93009 * 179.74977 * 6 5 4 8 8 C 1.50702 * 109.47260 * 125.02291 * 7 6 5 9 9 O 1.21287 * 119.99968 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00279 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00204 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.84545 * 23.80509 * 11 10 8 13 13 C 1.53781 * 113.61400 * 154.99858 * 11 10 8 14 14 C 1.53779 * 87.08232 * 139.98233 * 13 11 10 15 15 H 1.08994 * 113.61616 * 220.01842 * 14 13 11 16 16 N 1.46502 * 113.61419 * 89.11314 * 14 13 11 17 17 C 1.35313 * 125.87177 * 275.00592 * 16 14 13 18 18 C 1.35347 * 106.17518 * 180.02562 * 17 16 14 19 19 N 1.33769 * 106.49813 * 359.97438 * 18 17 16 20 20 N 1.28635 * 108.88443 * 359.73919 * 19 18 17 21 21 C 1.53774 * 113.61603 * 252.49745 * 11 10 8 22 22 N 1.40071 * 108.14089 * 359.74508 * 6 5 4 23 23 C 1.31631 * 108.10775 * 0.02562 * 22 6 5 24 24 C 1.48414 * 126.03983 * 179.97438 * 23 22 6 25 25 C 1.39317 * 120.12177 * 145.29867 * 24 23 22 26 26 C 1.38021 * 119.88270 * 180.23465 * 25 24 23 27 27 C 1.38322 * 120.11602 * 359.46521 * 26 25 24 28 28 C 1.38317 * 120.24054 * 0.30341 * 27 26 25 29 29 C 1.38020 * 120.12095 * 359.95566 * 28 27 26 30 30 H 0.96706 * 113.99711 * 300.00411 * 1 2 3 31 31 H 1.08999 * 109.46789 * 240.00001 * 2 1 3 32 32 H 1.48498 * 110.00170 * 300.00184 * 3 2 1 33 33 H 1.48503 * 110.00014 * 61.31999 * 3 2 1 34 34 H 1.08003 * 126.01054 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46932 * 245.02156 * 7 6 5 36 36 H 1.09002 * 109.47253 * 5.02198 * 7 6 5 37 37 H 0.97003 * 119.99731 * 359.97438 * 10 8 7 38 38 H 1.09002 * 113.61509 * 254.53528 * 13 11 10 39 39 H 1.09003 * 113.61451 * 25.35169 * 13 11 10 40 40 H 1.07997 * 126.91082 * 0.02562 * 17 16 14 41 41 H 1.08003 * 126.74663 * 179.97438 * 18 17 16 42 42 H 1.09004 * 113.61406 * 334.56802 * 21 11 10 43 43 H 1.09002 * 113.61319 * 105.47058 * 21 11 10 44 44 H 1.08004 * 120.06224 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.94618 * 179.75015 * 26 25 24 46 46 H 1.07998 * 119.87742 * 180.27742 * 27 26 25 47 47 H 1.07997 * 119.93938 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.05800 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 1.2304 5 6 2.4604 -0.1249 2.3267 6 7 2.7925 -1.0995 3.2005 7 6 3.4026 -0.9018 4.5177 8 6 2.5555 -1.5711 5.5692 9 8 1.5422 -2.1561 5.2497 10 7 2.9244 -1.5205 6.8645 11 6 2.1006 -2.1706 7.8867 12 1 1.4857 -2.9762 7.4854 13 6 2.8838 -2.5643 9.1502 14 6 1.6598 -2.1013 9.9579 15 1 1.9168 -1.5617 10.8694 16 7 0.6698 -3.1580 10.1807 17 6 -0.3173 -3.5127 9.3258 18 6 -0.9910 -4.5217 9.9256 19 7 -0.3907 -4.7327 11.1023 20 7 0.5932 -3.9125 11.2207 21 6 1.3233 -1.1821 8.7718 22 7 2.4524 -2.3322 2.6289 23 6 1.9303 -2.1029 1.4426 24 6 1.4335 -3.1304 0.4938 25 6 0.3309 -2.8611 -0.3141 26 6 -0.1300 -3.8220 -1.1912 27 6 0.5077 -5.0465 -1.2769 28 6 1.6057 -5.3174 -0.4806 29 6 2.0716 -4.3656 0.4038 30 1 -0.3933 0.4418 0.7651 31 1 1.7922 -0.5138 -0.8900 32 1 1.5616 2.4679 -1.2084 33 1 1.5880 2.4585 1.2243 34 1 2.5979 0.9358 2.4762 35 1 4.4016 -1.3376 4.5245 36 1 3.4701 0.1651 4.7304 37 1 3.7354 -1.0535 7.1199 38 1 3.0788 -3.6340 9.2275 39 1 3.7742 -1.9586 9.3185 40 1 -0.5257 -3.0780 8.3594 41 1 -1.8453 -5.0522 9.5317 42 1 1.7863 -0.1975 8.8374 43 1 0.2585 -1.1359 8.5436 44 1 -0.1650 -1.9037 -0.2512 45 1 -0.9871 -3.6158 -1.8151 46 1 0.1465 -5.7939 -1.9678 47 1 2.0996 -6.2752 -0.5512 48 1 2.9293 -4.5781 1.0248 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_12622748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:44:07 Heat of formation + Delta-G solvation = 186.078581 kcal Electronic energy + Delta-G solvation = -34008.474615 eV Core-core repulsion = 29456.789521 eV Total energy + Delta-G solvation = -4551.685094 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.159 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.42515 -42.48654 -41.23031 -39.88804 -39.50133 -37.87755 -35.32516 -34.76949 -33.41918 -32.28850 -32.09761 -31.85668 -31.40135 -28.93881 -27.09546 -26.72693 -25.82958 -24.26611 -23.68191 -23.50039 -23.18327 -21.92044 -21.49392 -21.15751 -20.87556 -18.89961 -18.41575 -18.39327 -17.80646 -17.70843 -17.23095 -16.81885 -16.70647 -16.43428 -16.19582 -16.03834 -15.84317 -15.65602 -15.49208 -15.31224 -14.91076 -14.75093 -14.50233 -14.28653 -14.15812 -13.92909 -13.74056 -13.68288 -13.64906 -13.53970 -13.25136 -12.83905 -12.53696 -12.42010 -12.35581 -12.13959 -12.07262 -11.82607 -11.68511 -11.59996 -11.32028 -11.09302 -10.65734 -10.47570 -10.39284 -10.22615 -9.87134 -9.74843 -9.27723 -4.82168 0.07532 0.47723 0.49241 0.83129 1.27700 1.30882 1.43336 1.44608 1.48129 1.66128 1.72289 2.06321 2.07267 2.86822 2.90611 3.13614 3.36749 3.42296 3.47836 3.52657 3.59460 3.71808 3.78251 3.95713 4.02621 4.03725 4.13250 4.15816 4.16849 4.20253 4.23035 4.31489 4.34338 4.47407 4.51465 4.53266 4.61027 4.62005 4.69449 4.77431 4.80987 4.86542 4.88993 5.00868 5.12369 5.17960 5.31193 5.32685 5.57516 5.60881 5.62042 5.64925 5.93239 6.06099 6.43475 6.59038 6.62992 7.13817 7.38969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.052 4.052 3 Si 0.784 3.216 4 C -0.262 4.262 5 C 0.076 3.924 6 N -0.358 5.358 7 C 0.108 3.892 8 C 0.496 3.504 9 O -0.565 6.565 10 N -0.698 5.698 11 C 0.116 3.884 12 H 0.087 0.913 13 C -0.134 4.134 14 C 0.100 3.900 15 H 0.149 0.851 16 N -0.269 5.269 17 C -0.041 4.041 18 C -0.063 4.063 19 N -0.312 5.312 20 N -0.115 5.115 21 C -0.136 4.136 22 N -0.294 5.294 23 C 0.110 3.890 24 C -0.037 4.037 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.131 4.131 29 C -0.109 4.109 30 H 0.384 0.616 31 H 0.104 0.896 32 H -0.308 1.308 33 H -0.260 1.260 34 H 0.220 0.780 35 H 0.144 0.856 36 H 0.182 0.818 37 H 0.427 0.573 38 H 0.066 0.934 39 H 0.154 0.846 40 H 0.211 0.789 41 H 0.211 0.789 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.236 10.331 -0.888 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.161 4.161 3 Si 0.687 3.313 4 C -0.274 4.274 5 C -0.069 4.069 6 N -0.140 5.140 7 C -0.015 4.015 8 C 0.282 3.718 9 O -0.441 6.441 10 N -0.352 5.352 11 C 0.010 3.990 12 H 0.105 0.895 13 C -0.173 4.173 14 C -0.001 4.001 15 H 0.166 0.834 16 N -0.064 5.064 17 C -0.192 4.192 18 C -0.221 4.221 19 N -0.177 5.177 20 N -0.094 5.094 21 C -0.176 4.176 22 N -0.116 5.116 23 C -0.055 4.055 24 C -0.038 4.038 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.136 4.136 28 C -0.149 4.149 29 C -0.128 4.128 30 H 0.233 0.767 31 H 0.122 0.878 32 H -0.236 1.236 33 H -0.185 1.185 34 H 0.236 0.764 35 H 0.162 0.838 36 H 0.200 0.800 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.171 0.829 40 H 0.228 0.772 41 H 0.227 0.773 42 H 0.167 0.833 43 H 0.098 0.902 44 H 0.170 0.830 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.458 9.253 0.796 12.562 hybrid contribution -1.768 0.124 -0.932 2.002 sum 6.690 9.377 -0.137 11.520 Atomic orbital electron populations 1.86457 1.19184 1.79730 1.50125 1.24630 0.82781 1.12222 0.96427 0.94056 0.89724 0.70156 0.77339 1.20548 1.14203 0.92258 1.00347 1.22844 0.98154 0.96739 0.89180 1.48141 1.47864 1.03512 1.14481 1.22042 0.96911 1.06532 0.76008 1.21181 0.85942 0.80242 0.84461 1.90838 1.27795 1.43792 1.81725 1.45619 1.28632 1.56105 1.04826 1.22541 0.93732 0.95852 0.86832 0.89514 1.23818 0.97806 1.03594 0.92049 1.22735 0.88174 0.86669 1.02569 0.83376 1.47484 1.22085 1.24814 1.11980 1.24012 0.93193 1.01448 1.00548 1.24163 1.04586 1.00684 0.92668 1.75100 1.04489 1.18688 1.19466 1.78247 1.17247 1.03642 1.10247 1.23958 1.02858 0.99972 0.90791 1.77694 1.20529 1.04311 1.09049 1.20821 0.98728 0.93645 0.92304 1.18040 0.97033 0.92610 0.96162 1.22004 0.95276 1.01314 0.94607 1.21413 1.00733 0.93716 0.99118 1.21585 0.95448 0.97476 0.99084 1.21351 0.97467 0.99802 0.96297 1.21318 0.99989 0.92920 0.98622 0.76672 0.87839 1.23627 1.18497 0.76366 0.83834 0.80035 0.73390 0.91538 0.82861 0.77216 0.77275 0.83303 0.90216 0.83018 0.84227 0.83794 0.84079 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.23 10.10 -148.98 -1.50 -2.74 16 2 C -0.05 0.00 2.00 71.24 0.14 0.15 16 3 Si 0.78 -4.24 30.81 68.60 2.11 -2.12 16 4 C -0.26 -0.55 5.34 -19.95 -0.11 -0.66 16 5 C 0.08 -0.28 9.96 83.47 0.83 0.55 16 6 N -0.36 0.15 3.40 -351.91 -1.20 -1.05 16 7 C 0.11 -1.17 6.99 85.63 0.60 -0.57 16 8 C 0.50 -1.97 7.86 87.66 0.69 -1.28 16 9 O -0.56 -5.16 15.30 -3.05 -0.05 -5.20 16 10 N -0.70 8.22 5.35 -440.04 -2.36 5.87 16 11 C 0.12 -0.94 3.82 45.52 0.17 -0.77 16 12 H 0.09 -0.03 6.30 -2.39 -0.02 -0.04 16 13 C -0.13 1.39 7.63 31.12 0.24 1.62 16 14 C 0.10 -0.74 5.11 45.52 0.23 -0.51 16 15 H 0.15 -1.55 8.14 -2.39 -0.02 -1.57 16 16 N -0.27 -0.61 3.52 -324.67 -1.14 -1.75 16 17 C -0.04 -0.07 9.68 83.49 0.81 0.74 16 18 C -0.06 -0.38 12.05 83.73 1.01 0.63 16 19 N -0.31 -4.09 12.41 -58.26 -0.72 -4.81 16 20 N -0.11 -1.22 13.16 37.02 0.49 -0.73 16 21 C -0.14 1.55 7.13 31.12 0.22 1.77 16 22 N -0.29 -2.84 11.63 -48.16 -0.56 -3.40 16 23 C 0.11 1.01 6.74 42.53 0.29 1.29 16 24 C -0.04 -0.38 5.80 -20.04 -0.12 -0.50 16 25 C -0.11 -1.01 8.94 22.48 0.20 -0.81 16 26 C -0.13 -0.82 10.03 22.24 0.22 -0.60 16 27 C -0.12 -0.57 10.04 22.31 0.22 -0.35 16 28 C -0.13 -0.80 10.03 22.24 0.22 -0.57 16 29 C -0.11 -1.03 9.75 22.48 0.22 -0.81 16 30 H 0.38 -1.27 8.70 -74.05 -0.64 -1.91 16 31 H 0.10 0.17 7.83 -2.39 -0.02 0.15 16 32 H -0.31 -1.07 7.11 99.48 0.71 -0.37 16 33 H -0.26 1.40 6.99 99.48 0.70 2.10 16 34 H 0.22 -2.89 6.33 -2.91 -0.02 -2.91 16 35 H 0.14 -2.19 8.14 -2.39 -0.02 -2.21 16 36 H 0.18 -3.95 8.07 -2.39 -0.02 -3.97 16 37 H 0.43 -8.78 8.73 -92.71 -0.81 -9.59 16 38 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.15 -2.75 8.12 -2.39 -0.02 -2.77 16 40 H 0.21 -0.72 6.74 -2.91 -0.02 -0.74 16 41 H 0.21 0.04 8.06 -2.91 -0.02 0.01 16 42 H 0.15 -2.60 8.14 -2.38 -0.02 -2.62 16 43 H 0.08 -0.67 6.98 -2.39 -0.02 -0.68 16 44 H 0.15 1.28 4.50 -2.91 -0.01 1.26 16 45 H 0.14 0.30 8.06 -2.91 -0.02 0.27 16 46 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 47 H 0.14 0.21 8.06 -2.91 -0.02 0.19 16 48 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -42.14 403.84 0.78 -41.35 By element: Atomic # 1 Polarization: -24.34 SS G_CDS: -0.39 Total: -24.73 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.10 Total: -0.69 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -5.49 Total: -5.88 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -1.55 Total: -7.94 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.11 Total: -2.12 kcal Total: -42.14 0.78 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_12622748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.430 kcal (2) G-P(sol) polarization free energy of solvation -42.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds