Wall clock time and date at job start Sun Mar 7 2021 09:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38977 * 119.95374 * 2 1 4 4 O 1.35718 * 119.91231 * 359.97438 * 3 2 1 5 5 C 1.39008 * 120.17698 * 180.02562 * 3 2 1 6 6 C 1.50709 * 119.95810 * 179.97438 * 5 3 2 7 7 O 1.42900 * 109.46758 * 284.99544 * 6 5 3 8 8 Si 1.86291 * 109.47344 * 164.99485 * 6 5 3 9 9 C 1.37683 * 120.09056 * 359.68840 * 5 3 2 10 10 C 1.39755 * 119.90569 * 0.53717 * 9 5 3 11 11 C 1.47607 * 120.08452 * 179.76197 * 10 9 5 12 12 O 1.21583 * 120.00146 * 359.72632 * 11 10 9 13 13 N 1.34777 * 119.99527 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99724 * 179.72722 * 13 11 10 15 15 H 1.08994 * 112.85146 * 23.80616 * 14 13 11 16 16 C 1.53783 * 113.61417 * 155.00390 * 14 13 11 17 17 C 1.53782 * 87.07834 * 139.97969 * 16 14 13 18 18 H 1.09009 * 113.60763 * 220.01327 * 17 16 14 19 19 N 1.46493 * 113.61313 * 89.11978 * 17 16 14 20 20 C 1.35317 * 125.86685 * 274.99144 * 19 17 16 21 21 C 1.35348 * 106.17556 * 180.02562 * 20 19 17 22 22 N 1.33770 * 106.49999 * 0.02562 * 21 20 19 23 23 N 1.28638 * 108.88110 * 359.73881 * 22 21 20 24 24 C 1.53771 * 87.08417 * 334.56421 * 17 16 14 25 25 C 1.37715 * 119.95877 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47379 * 270.02536 * 1 2 3 27 27 H 1.08999 * 109.47097 * 30.02776 * 1 2 3 28 28 H 1.09000 * 109.46794 * 150.02853 * 1 2 3 29 29 H 0.96700 * 113.99573 * 90.00338 * 4 3 2 30 30 H 1.09003 * 109.46910 * 44.99095 * 6 5 3 31 31 H 0.96705 * 114.00210 * 299.99855 * 7 6 5 32 32 H 1.48509 * 110.00112 * 58.67843 * 8 6 5 33 33 H 1.48496 * 110.00070 * 179.97438 * 8 6 5 34 34 H 1.08004 * 120.05222 * 180.29918 * 9 5 3 35 35 H 0.97000 * 120.00483 * 359.73154 * 13 11 10 36 36 H 1.08994 * 113.61059 * 254.52914 * 16 14 13 37 37 H 1.08999 * 113.61315 * 25.34564 * 16 14 13 38 38 H 1.08002 * 126.90905 * 0.03152 * 20 19 17 39 39 H 1.07998 * 126.74832 * 179.97438 * 21 20 19 40 40 H 1.09001 * 113.61841 * 270.88817 * 24 17 16 41 41 H 1.09002 * 113.61254 * 139.98175 * 24 17 16 42 42 H 1.08002 * 120.04318 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5196 2.3779 -0.0005 5 6 3.5910 1.2096 -0.0005 6 6 4.3385 2.5182 -0.0011 7 8 4.2715 3.1044 -1.3026 8 14 6.1198 2.2162 0.4530 9 6 4.2859 0.0210 0.0054 10 6 3.5919 -1.1920 0.0006 11 6 4.3329 -2.4686 0.0017 12 8 5.5488 -2.4657 0.0017 13 7 3.6617 -3.6373 -0.0024 14 6 4.3973 -4.9043 -0.0074 15 1 5.4046 -4.8106 0.3979 16 6 3.6023 -6.0805 0.5839 17 6 4.1918 -6.9436 -0.5441 18 1 3.4786 -7.6473 -0.9735 19 7 5.4709 -7.5680 -0.1978 20 6 6.6906 -6.9937 -0.3136 21 6 7.5840 -7.9165 0.1132 22 7 6.8766 -8.9963 0.4641 23 7 5.6275 -8.7558 0.2727 24 6 4.3395 -5.6448 -1.3540 25 6 2.1947 -1.1931 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3633 -0.8903 -0.5134 29 1 1.3219 2.7182 0.8828 30 1 3.8879 3.1943 0.7255 31 1 4.6550 2.5564 -2.0011 32 1 6.7367 1.2707 -0.5119 33 1 6.8679 3.4989 0.4554 34 1 5.3660 0.0259 0.0099 35 1 2.6917 -3.6396 -0.0021 36 1 3.9349 -6.3758 1.5790 37 1 2.5216 -5.9535 0.5191 38 1 6.9076 -5.9990 -0.6740 39 1 8.6570 -7.8036 0.1603 40 1 3.4604 -5.3994 -1.9499 41 1 5.2672 -5.5885 -1.9234 42 1 1.6548 -2.1285 0.0014 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_13287732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:44:46 Heat of formation + Delta-G solvation = 52.755715 kcal Electronic energy + Delta-G solvation = -27812.490712 eV Core-core repulsion = 23762.947595 eV Total energy + Delta-G solvation = -4049.543118 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.36917 -41.80279 -40.89589 -39.56991 -37.98161 -37.48569 -35.37537 -34.01100 -33.46762 -32.04616 -31.62793 -27.98010 -27.22251 -27.05963 -26.64147 -24.73822 -23.62475 -23.08507 -22.05237 -21.62189 -20.97735 -19.60764 -18.88205 -18.44079 -18.13426 -17.70106 -17.19429 -16.86964 -16.52927 -16.29283 -16.10441 -15.97507 -15.86688 -15.50560 -15.30801 -14.78254 -14.72697 -14.32922 -14.10463 -13.89888 -13.78436 -13.64897 -13.52229 -13.27237 -12.89328 -12.81073 -12.75678 -12.48188 -12.34277 -12.01908 -11.92662 -11.78175 -11.62697 -11.18191 -11.01135 -10.62627 -10.41468 -10.27908 -9.96912 -9.63968 -5.02348 -0.38867 0.08402 0.55374 1.20030 1.32310 1.51289 1.54375 1.58917 1.85670 1.97796 2.55406 2.90580 3.13612 3.17938 3.31293 3.45780 3.53075 3.57492 3.59226 3.72835 3.82180 4.03225 4.09173 4.17803 4.22245 4.25468 4.34994 4.39126 4.49190 4.54574 4.63804 4.66017 4.73041 4.76346 4.81566 4.84392 4.88958 5.05793 5.09921 5.18732 5.22987 5.32312 5.34871 5.61986 5.66061 6.39937 6.40361 6.77151 7.07766 7.44978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C 0.158 3.842 4 O -0.497 6.497 5 C -0.154 4.154 6 C -0.062 4.062 7 O -0.541 6.541 8 Si 0.749 3.251 9 C -0.065 4.065 10 C -0.152 4.152 11 C 0.562 3.438 12 O -0.575 6.575 13 N -0.697 5.697 14 C 0.114 3.886 15 H 0.100 0.900 16 C -0.134 4.134 17 C 0.103 3.897 18 H 0.147 0.853 19 N -0.270 5.270 20 C -0.040 4.040 21 C -0.063 4.063 22 N -0.313 5.313 23 N -0.117 5.117 24 C -0.141 4.141 25 C -0.051 4.051 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.413 0.587 30 H 0.131 0.869 31 H 0.383 0.617 32 H -0.293 1.293 33 H -0.295 1.295 34 H 0.131 0.869 35 H 0.420 0.580 36 H 0.072 0.928 37 H 0.150 0.850 38 H 0.215 0.785 39 H 0.212 0.788 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 2.504 1.159 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C 0.112 3.888 4 O -0.311 6.311 5 C -0.155 4.155 6 C -0.172 4.172 7 O -0.348 6.348 8 Si 0.655 3.345 9 C -0.084 4.084 10 C -0.155 4.155 11 C 0.351 3.649 12 O -0.455 6.455 13 N -0.349 5.349 14 C 0.008 3.992 15 H 0.118 0.882 16 C -0.172 4.172 17 C 0.001 3.999 18 H 0.165 0.835 19 N -0.064 5.064 20 C -0.191 4.191 21 C -0.221 4.221 22 N -0.178 5.178 23 N -0.096 5.096 24 C -0.180 4.180 25 C -0.070 4.070 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.274 0.726 30 H 0.149 0.851 31 H 0.231 0.769 32 H -0.220 1.220 33 H -0.222 1.222 34 H 0.149 0.851 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.232 0.768 39 H 0.228 0.772 40 H 0.161 0.839 41 H 0.102 0.898 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.685 1.663 1.102 7.940 hybrid contribution 0.468 1.099 -1.068 1.602 sum -7.217 2.761 0.034 7.728 Atomic orbital electron populations 1.20771 0.88311 1.04056 1.03754 1.20455 0.98291 0.91793 1.01616 1.18475 0.88654 0.85977 0.95670 1.84737 1.75451 1.35732 1.35223 1.20499 0.94183 0.95396 1.05440 1.24894 1.09951 0.94100 0.88234 1.86619 1.82902 1.48221 1.17069 0.94219 0.73232 0.77268 0.89759 1.21119 1.00393 0.91077 0.95820 1.19777 0.94370 0.92514 1.08815 1.18379 0.86782 0.84591 0.75156 1.90799 1.15253 1.88080 1.51381 1.45640 1.11003 1.04013 1.74232 1.22693 0.97562 0.81936 0.96962 0.88235 1.23811 1.03580 0.92019 0.97833 1.22676 0.81351 0.96094 0.99771 0.83521 1.47465 1.08721 1.10142 1.40069 1.24082 0.84043 1.03381 1.07626 1.24178 1.03096 0.90213 1.04574 1.75103 0.97440 1.25827 1.19473 1.78258 1.13962 1.00174 1.17162 1.23976 1.06510 0.90283 0.97256 1.21388 0.91536 0.99111 0.94938 0.89473 0.91518 0.89544 0.72649 0.85112 0.76860 1.22007 1.22217 0.85118 0.74055 0.90882 0.83224 0.76826 0.77159 0.83910 0.89762 0.81506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.04 9.78 71.24 0.70 1.74 16 2 C -0.12 0.69 5.89 -19.81 -0.12 0.57 16 3 C 0.16 -0.36 6.66 22.63 0.15 -0.21 16 4 O -0.50 1.41 11.85 -90.39 -1.07 0.34 16 5 C -0.15 0.12 5.27 -19.81 -0.10 0.01 16 6 C -0.06 0.02 2.37 71.24 0.17 0.19 16 7 O -0.54 -2.09 12.88 -148.98 -1.92 -4.01 16 8 Si 0.75 0.39 30.23 68.60 2.07 2.46 16 9 C -0.07 -0.04 8.20 22.51 0.18 0.14 16 10 C -0.15 0.33 5.88 -20.08 -0.12 0.21 16 11 C 0.56 -0.20 7.76 86.72 0.67 0.47 16 12 O -0.57 -4.81 15.94 -3.98 -0.06 -4.87 16 13 N -0.70 5.97 5.30 -443.11 -2.35 3.62 16 14 C 0.11 -0.88 3.82 45.52 0.17 -0.71 16 15 H 0.10 -0.23 6.30 -2.39 -0.02 -0.24 16 16 C -0.13 1.41 7.63 31.12 0.24 1.64 16 17 C 0.10 -0.78 5.11 45.52 0.23 -0.54 16 18 H 0.15 -1.51 8.14 -2.38 -0.02 -1.53 16 19 N -0.27 -0.37 3.52 -324.68 -1.14 -1.51 16 20 C -0.04 -0.01 9.68 83.49 0.81 0.80 16 21 C -0.06 -0.28 12.05 83.73 1.01 0.72 16 22 N -0.31 -3.76 12.41 -58.26 -0.72 -4.48 16 23 N -0.12 -1.13 13.16 37.02 0.49 -0.65 16 24 C -0.14 1.49 7.13 31.12 0.22 1.71 16 25 C -0.05 0.40 9.18 22.50 0.21 0.60 16 26 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.07 -0.41 7.52 -2.39 -0.02 -0.43 16 28 H 0.09 -1.04 8.08 -2.39 -0.02 -1.06 16 29 H 0.41 -4.92 9.06 -74.06 -0.67 -5.59 16 30 H 0.13 -0.47 7.82 -2.39 -0.02 -0.48 16 31 H 0.38 -0.34 8.70 -74.05 -0.64 -0.98 16 32 H -0.29 -1.90 6.69 99.48 0.67 -1.23 16 33 H -0.29 -2.14 7.11 99.48 0.71 -1.43 16 34 H 0.13 0.41 4.43 -2.91 -0.01 0.39 16 35 H 0.42 -6.60 6.75 -92.71 -0.63 -7.23 16 36 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.15 -2.61 8.12 -2.39 -0.02 -2.63 16 38 H 0.22 -1.20 6.74 -2.91 -0.02 -1.22 16 39 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 40 H 0.14 -2.21 8.14 -2.39 -0.02 -2.23 16 41 H 0.08 -0.71 6.98 -2.39 -0.02 -0.72 16 42 H 0.17 -2.63 6.39 -2.91 -0.02 -2.65 16 Total: 0.00 -31.71 353.03 -1.11 -32.82 By element: Atomic # 1 Polarization: -30.26 SS G_CDS: -0.83 Total: -31.09 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.43 Total: 7.36 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -3.73 Total: -3.02 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -3.05 Total: -8.54 kcal Atomic # 14 Polarization: 0.39 SS G_CDS: 2.07 Total: 2.46 kcal Total: -31.71 -1.11 -32.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_13287732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.578 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds