Wall clock time and date at job start Sun Mar 7 2021 09:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86295 * 109.47135 * 2 1 4 4 C 1.50697 * 109.47099 * 240.00125 * 2 1 3 5 5 C 1.38267 * 119.94354 * 300.00004 * 4 2 1 6 6 C 1.38151 * 120.05677 * 180.02562 * 5 4 2 7 7 C 1.38733 * 119.94004 * 0.02562 * 6 5 4 8 8 O 1.35904 * 120.05128 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99628 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.85572 * 336.20166 * 13 12 10 15 15 C 1.53787 * 113.61166 * 107.50579 * 13 12 10 16 16 C 1.53780 * 87.07920 * 89.11718 * 15 13 12 17 17 H 1.09007 * 113.61541 * 270.88275 * 16 15 13 18 18 N 1.46498 * 113.69429 * 139.99263 * 16 15 13 19 19 C 1.35317 * 125.86711 * 347.46357 * 18 16 15 20 20 C 1.35351 * 106.17721 * 179.97438 * 19 18 16 21 21 N 1.33770 * 106.49531 * 359.97438 * 20 19 18 22 22 N 1.28642 * 108.88897 * 359.73557 * 21 20 19 23 23 C 1.53777 * 113.61489 * 205.00300 * 13 12 10 24 24 C 1.38730 * 119.89273 * 0.27301 * 7 6 5 25 25 C 1.38147 * 119.94222 * 359.47199 * 24 7 6 26 26 H 0.96696 * 114.00044 * 300.00125 * 1 2 3 27 27 H 1.08997 * 109.46900 * 120.00198 * 2 1 3 28 28 H 1.48503 * 110.00146 * 178.67867 * 3 2 1 29 29 H 1.48500 * 110.00389 * 300.00204 * 3 2 1 30 30 H 1.08003 * 119.97542 * 0.02562 * 5 4 2 31 31 H 1.07998 * 120.02823 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 33 33 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 34 34 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 35 35 H 1.09003 * 113.61240 * 203.66112 * 15 13 12 36 36 H 1.08987 * 113.61320 * 334.56642 * 15 13 12 37 37 H 1.07997 * 126.90922 * 0.02562 * 19 18 16 38 38 H 1.07991 * 126.75249 * 179.97438 * 20 19 18 39 39 H 1.09004 * 113.61607 * 25.42965 * 23 13 12 40 40 H 1.08996 * 113.61755 * 156.33870 * 23 13 12 41 41 H 1.07997 * 120.03088 * 179.72386 * 24 7 6 42 42 H 1.07998 * 119.97468 * 180.26993 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5966 -2.0341 -1.4481 6 6 2.0562 -2.6878 -2.5751 7 6 2.8548 -2.0149 -3.4885 8 8 3.3078 -2.6556 -4.5981 9 6 4.1256 -1.9008 -5.4945 10 6 4.5309 -2.7697 -6.6572 11 8 4.1558 -3.9217 -6.7129 12 7 5.3092 -2.2663 -7.6356 13 6 5.7027 -3.1109 -8.7661 14 1 5.6767 -4.1745 -8.5291 15 6 4.9884 -2.7531 -10.0802 16 6 6.1395 -1.7687 -10.3462 17 1 5.9663 -0.7733 -9.9370 18 7 6.5791 -1.7407 -11.7434 19 6 6.2408 -2.6369 -12.6991 20 6 6.8624 -2.2331 -13.8316 21 7 7.5412 -1.1241 -13.5176 22 7 7.3480 -0.8555 -12.2745 23 6 7.0076 -2.6627 -9.4450 24 6 3.1944 -0.6886 -3.2647 25 6 2.7278 -0.0379 -2.1389 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5139 0.8900 28 1 3.5346 1.7703 0.0322 29 1 1.5615 2.4679 -1.2084 30 1 0.9753 -2.5576 -0.7366 31 1 1.7942 -3.7216 -2.7449 32 1 5.0173 -1.5566 -4.9705 33 1 3.5650 -1.0409 -5.8611 34 1 5.6089 -1.3449 -7.5911 35 1 4.9454 -3.5773 -10.7922 36 1 4.0236 -2.2675 -9.9344 37 1 5.6024 -3.5001 -12.5820 38 1 6.8189 -2.7122 -14.7985 39 1 7.6729 -2.1040 -8.7866 40 1 7.5166 -3.4621 -9.9834 41 1 3.8195 -0.1639 -3.9720 42 1 2.9883 0.9959 -1.9663 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_2989410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:37 Heat of formation + Delta-G solvation = 66.852072 kcal Electronic energy + Delta-G solvation = -26553.529762 eV Core-core repulsion = 22504.597908 eV Total energy + Delta-G solvation = -4048.931854 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.29090 -41.78480 -41.14432 -39.77102 -38.83511 -37.19844 -35.31861 -33.56259 -32.53982 -32.02188 -31.91779 -29.77004 -27.11429 -26.77492 -26.13870 -24.28175 -23.63420 -23.04474 -22.47321 -21.88943 -20.69626 -19.66201 -19.02920 -18.43694 -18.21378 -17.55378 -17.43274 -17.34679 -16.91895 -16.75493 -16.06293 -15.84253 -15.76129 -15.65765 -15.46146 -15.20876 -14.80326 -14.53480 -14.17348 -14.01165 -13.92657 -13.78481 -13.59097 -13.46378 -13.41657 -12.78254 -12.52588 -12.39779 -12.22244 -12.10404 -12.06365 -11.86773 -11.68667 -11.15656 -11.03199 -10.40366 -10.36401 -10.29913 -10.18597 -9.33062 -4.92388 0.11324 0.16831 0.59391 1.29905 1.30671 1.32267 1.39161 1.57610 1.64934 1.96519 2.42867 2.50389 2.90065 3.11184 3.33518 3.42453 3.48088 3.59284 3.60326 3.66843 3.73535 3.90263 3.96081 3.98692 4.12542 4.13628 4.22060 4.27646 4.31513 4.39884 4.41143 4.48501 4.58179 4.63930 4.70597 4.77050 4.80708 4.82601 5.02908 5.08137 5.21089 5.27413 5.36691 5.55139 5.65725 6.11391 6.30570 6.92225 6.97827 7.48079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.077 4.077 3 Si 0.772 3.228 4 C -0.129 4.129 5 C -0.056 4.056 6 C -0.159 4.159 7 C 0.123 3.877 8 O -0.314 6.314 9 C 0.032 3.968 10 C 0.523 3.477 11 O -0.562 6.562 12 N -0.696 5.696 13 C 0.130 3.870 14 H 0.108 0.892 15 C -0.145 4.145 16 C 0.107 3.893 17 H 0.146 0.854 18 N -0.276 5.276 19 C -0.037 4.037 20 C -0.067 4.067 21 N -0.318 5.318 22 N -0.126 5.126 23 C -0.136 4.136 24 C -0.201 4.201 25 C -0.100 4.100 26 H 0.403 0.597 27 H 0.092 0.908 28 H -0.285 1.285 29 H -0.296 1.296 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.422 0.578 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.229 0.771 38 H 0.212 0.788 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.162 0.838 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 1.834 5.384 5.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.187 4.187 3 Si 0.678 3.322 4 C -0.130 4.130 5 C -0.074 4.074 6 C -0.178 4.178 7 C 0.077 3.923 8 O -0.227 6.227 9 C -0.046 4.046 10 C 0.309 3.691 11 O -0.439 6.439 12 N -0.351 5.351 13 C 0.023 3.977 14 H 0.126 0.874 15 C -0.184 4.184 16 C 0.006 3.994 17 H 0.163 0.837 18 N -0.070 5.070 19 C -0.188 4.188 20 C -0.225 4.225 21 N -0.183 5.183 22 N -0.104 5.104 23 C -0.175 4.175 24 C -0.219 4.219 25 C -0.117 4.117 26 H 0.254 0.746 27 H 0.110 0.890 28 H -0.213 1.213 29 H -0.224 1.224 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.261 0.739 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.245 0.755 38 H 0.229 0.771 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.179 0.821 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.225 2.411 4.590 5.190 hybrid contribution -0.304 -0.930 -0.613 1.154 sum -0.529 1.481 3.977 4.277 Atomic orbital electron populations 1.86441 1.17383 1.82411 1.51346 1.24801 0.85766 1.11005 0.97097 0.94288 0.77376 0.75495 0.85031 1.19687 1.00667 0.95130 0.97478 1.21003 0.96669 0.93596 0.96151 1.20735 1.00782 1.01635 0.94620 1.19120 0.94807 0.91491 0.86837 1.86127 1.65038 1.39990 1.31517 1.22775 0.97699 0.94434 0.89682 1.20363 0.77974 0.87410 0.83364 1.90785 1.54920 1.19912 1.78276 1.45358 1.51640 1.16559 1.21520 1.21556 0.94536 0.96858 0.84713 0.87364 1.23971 0.97710 0.99069 0.97692 1.23861 0.97836 1.03070 0.74597 0.83663 1.47763 1.30764 1.16881 1.11617 1.24222 1.06138 1.00360 0.88103 1.24231 1.00055 0.96034 1.02141 1.75091 1.21624 1.16366 1.05227 1.78257 1.12518 1.15457 1.04208 1.23775 0.96760 0.99715 0.97273 1.21396 1.05894 0.93894 1.00755 1.20867 0.97744 0.98954 0.94145 0.74617 0.88980 1.21260 1.22398 0.83684 0.84420 0.85708 0.85819 0.73932 0.86005 0.88623 0.75489 0.77109 0.87792 0.87362 0.82101 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.43 12.74 -148.98 -1.90 -1.47 16 2 C -0.08 0.10 2.81 71.24 0.20 0.30 16 3 Si 0.77 -2.57 29.78 68.60 2.04 -0.52 16 4 C -0.13 -0.52 5.42 -19.85 -0.11 -0.62 16 5 C -0.06 -0.24 9.60 22.26 0.21 -0.02 16 6 C -0.16 -0.85 9.99 22.37 0.22 -0.63 16 7 C 0.12 0.55 6.69 22.51 0.15 0.70 16 8 O -0.31 -1.56 9.67 -73.43 -0.71 -2.27 16 9 C 0.03 -0.15 5.22 71.24 0.37 0.22 16 10 C 0.52 -0.66 7.91 87.66 0.69 0.03 16 11 O -0.56 -5.57 16.10 16.01 0.26 -5.31 16 12 N -0.70 6.46 5.26 -440.03 -2.32 4.14 16 13 C 0.13 -1.11 4.32 45.52 0.20 -0.91 16 14 H 0.11 -0.48 7.46 -2.38 -0.02 -0.50 16 15 C -0.14 1.48 7.23 31.12 0.22 1.71 16 16 C 0.11 -0.87 4.83 45.52 0.22 -0.65 16 17 H 0.15 -1.54 8.14 -2.38 -0.02 -1.56 16 18 N -0.28 0.12 3.53 -324.66 -1.15 -1.03 16 19 C -0.04 0.12 10.78 83.49 0.90 1.02 16 20 C -0.07 -0.14 12.05 83.73 1.01 0.87 16 21 N -0.32 -3.40 12.41 -58.26 -0.72 -4.13 16 22 N -0.13 -1.07 13.17 37.02 0.49 -0.58 16 23 C -0.14 1.34 7.62 31.12 0.24 1.58 16 24 C -0.20 -0.20 9.04 22.37 0.20 0.00 16 25 C -0.10 -0.33 8.66 22.26 0.19 -0.14 16 26 H 0.40 -4.53 8.74 -74.06 -0.65 -5.18 16 27 H 0.09 -0.47 7.96 -2.39 -0.02 -0.49 16 28 H -0.29 -0.41 7.11 99.48 0.71 0.30 16 29 H -0.30 -1.18 7.11 99.48 0.71 -0.48 16 30 H 0.15 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.14 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.13 -1.34 7.65 -2.39 -0.02 -1.36 16 33 H 0.12 -1.30 7.67 -2.39 -0.02 -1.32 16 34 H 0.42 -6.81 8.70 -92.71 -0.81 -7.61 16 35 H 0.12 -1.53 6.34 -2.39 -0.02 -1.54 16 36 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.23 -2.78 6.74 -2.91 -0.02 -2.80 16 38 H 0.21 -0.87 8.06 -2.92 -0.02 -0.90 16 39 H 0.10 -1.17 8.14 -2.39 -0.02 -1.18 16 40 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.16 -1.03 6.30 -2.91 -0.02 -1.05 16 42 H 0.12 0.21 4.87 -2.91 -0.01 0.19 16 Total: 0.00 -34.99 358.24 0.59 -34.40 By element: Atomic # 1 Polarization: -26.33 SS G_CDS: -0.33 Total: -26.66 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.93 Total: 3.44 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -3.70 Total: -1.60 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -2.35 Total: -9.05 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.04 Total: -0.52 kcal Total: -34.99 0.59 -34.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_2989410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.248 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds