Wall clock time and date at job start Sun Mar 7 2021 09:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47458 * 2 1 4 4 C 1.50700 * 109.47098 * 120.00478 * 2 1 3 5 5 C 1.38266 * 119.94640 * 64.99609 * 4 2 1 6 6 C 1.38145 * 120.05239 * 179.97438 * 5 4 2 7 7 C 1.38725 * 119.94620 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05627 * 180.02562 * 7 6 5 9 9 C 1.42902 * 117.00290 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47338 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47304 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99944 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00173 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00096 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.85524 * 23.79618 * 14 13 11 16 16 C 1.53781 * 113.61601 * 154.99805 * 14 13 11 17 17 C 1.53781 * 87.08319 * 139.97985 * 16 14 13 18 18 H 1.08999 * 113.61299 * 220.01410 * 17 16 14 19 19 N 1.46500 * 113.61465 * 89.19682 * 17 16 14 20 20 C 1.35309 * 125.87190 * 275.00090 * 19 17 16 21 21 C 1.35344 * 106.17783 * 180.02562 * 20 19 17 22 22 N 1.33770 * 106.49691 * 359.97438 * 21 20 19 23 23 N 1.28633 * 108.88478 * 359.73570 * 22 21 20 24 24 C 1.53779 * 87.07986 * 334.56572 * 17 16 14 25 25 C 1.38731 * 119.88981 * 359.97438 * 7 6 5 26 26 C 1.38143 * 119.94414 * 0.02562 * 25 7 6 27 27 H 0.96699 * 113.99872 * 300.00226 * 1 2 3 28 28 H 1.09003 * 109.46753 * 239.99942 * 2 1 3 29 29 H 1.48504 * 109.99950 * 300.00030 * 3 2 1 30 30 H 1.48494 * 110.00211 * 61.32147 * 3 2 1 31 31 H 1.07993 * 119.96871 * 0.25782 * 5 4 2 32 32 H 1.08000 * 120.02375 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.46773 * 299.99747 * 9 8 7 34 34 H 1.08993 * 109.47213 * 59.99622 * 9 8 7 35 35 H 1.09000 * 109.47222 * 299.99766 * 10 9 8 36 36 H 1.09006 * 109.46858 * 59.99614 * 10 9 8 37 37 H 0.97002 * 119.99985 * 359.97438 * 13 11 10 38 38 H 1.09007 * 113.61121 * 254.53000 * 16 14 13 39 39 H 1.08993 * 113.61837 * 25.42740 * 16 14 13 40 40 H 1.08000 * 126.90971 * 359.97438 * 20 19 17 41 41 H 1.08008 * 126.75483 * 179.97438 * 21 20 19 42 42 H 1.09001 * 113.61551 * 270.88371 * 24 17 16 43 43 H 1.09008 * 113.61348 * 139.97899 * 24 17 16 44 44 H 1.08001 * 120.02847 * 179.97438 * 25 7 6 45 45 H 1.08001 * 119.97009 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6839 -2.0606 1.3971 6 6 2.1438 -2.7142 2.5239 7 6 2.8548 -2.0150 3.4883 8 8 3.3088 -2.6559 4.5974 9 6 4.0329 -1.8728 5.5485 10 6 4.4591 -2.7595 6.7203 11 6 5.2232 -1.9338 7.7230 12 8 5.4082 -0.7524 7.5206 13 7 5.7009 -2.5082 8.8447 14 6 6.4433 -1.7055 9.8198 15 1 6.2043 -0.6435 9.7634 16 6 6.3959 -2.2726 11.2484 17 6 7.8779 -1.8802 11.3691 18 1 8.4836 -2.6186 11.8945 19 7 8.0856 -0.5173 11.8646 20 6 8.0876 0.6079 11.1131 21 6 8.3149 1.6321 11.9683 22 7 8.4386 1.0905 13.1852 23 7 8.2918 -0.1839 13.0907 24 6 7.9527 -1.9990 9.8377 25 6 3.1026 -0.6607 3.3182 26 6 2.6406 -0.0116 2.1896 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 1.5616 2.4679 -1.2085 30 1 1.5881 2.4585 1.2242 31 1 1.1347 -2.6055 0.6437 32 1 1.9507 -3.7689 2.6535 33 1 4.9172 -1.4494 5.0724 34 1 3.3969 -1.0673 5.9154 35 1 3.5745 -3.1826 7.1963 36 1 5.0950 -3.5653 6.3537 37 1 5.5526 -3.4530 9.0068 38 1 5.7406 -1.7152 11.9179 39 1 6.2245 -3.3483 11.2857 40 1 7.9388 0.6751 10.0456 41 1 8.3829 2.6804 11.7175 42 1 8.2071 -3.0000 9.4893 43 1 8.5545 -1.2207 9.3683 44 1 3.6556 -0.1140 4.0677 45 1 2.8337 1.0427 2.0565 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_4549602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:40 Heat of formation + Delta-G solvation = 57.369775 kcal Electronic energy + Delta-G solvation = -28424.453611 eV Core-core repulsion = 24219.572955 eV Total energy + Delta-G solvation = -4204.880656 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.37665 -41.48455 -41.11337 -39.74675 -39.10890 -37.30082 -35.27085 -33.68064 -32.98950 -32.05531 -31.99938 -31.40293 -27.28568 -27.05813 -26.33659 -25.36119 -23.70789 -23.62814 -22.97604 -22.20729 -21.56446 -20.94521 -19.52405 -18.51033 -18.42782 -17.79672 -17.67852 -17.47378 -17.15682 -16.93066 -16.42894 -16.16766 -16.12742 -15.98362 -15.66135 -15.48494 -14.97168 -14.76477 -14.71476 -14.45733 -14.29552 -14.11648 -13.72678 -13.63115 -13.52941 -13.47991 -12.88489 -12.79748 -12.77748 -12.35357 -12.28018 -12.06573 -12.02286 -11.78102 -11.76860 -11.58477 -11.14161 -10.98944 -10.59541 -10.42306 -10.18665 -10.03750 -9.22483 -4.93659 0.28044 0.30873 0.54763 1.31457 1.31738 1.48922 1.53598 1.57803 1.69932 1.93918 2.47765 2.65045 2.91106 3.17524 3.44003 3.46606 3.56617 3.58605 3.71795 3.82070 3.83274 3.87869 3.92611 4.00974 4.08651 4.22573 4.25758 4.27690 4.34985 4.36431 4.45789 4.54641 4.56459 4.64998 4.68046 4.70774 4.73819 4.79613 4.81922 4.92297 4.97919 5.18106 5.18296 5.28714 5.36660 5.49611 5.65373 5.72155 6.32374 6.44463 6.48539 7.13977 7.44269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.760 3.240 4 C -0.159 4.159 5 C -0.059 4.059 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.321 6.321 9 C 0.071 3.929 10 C -0.134 4.134 11 C 0.522 3.478 12 O -0.580 6.580 13 N -0.702 5.702 14 C 0.115 3.885 15 H 0.098 0.902 16 C -0.136 4.136 17 C 0.101 3.899 18 H 0.145 0.855 19 N -0.270 5.270 20 C -0.039 4.039 21 C -0.064 4.064 22 N -0.314 5.314 23 N -0.118 5.118 24 C -0.138 4.138 25 C -0.209 4.209 26 C -0.082 4.082 27 H 0.385 0.615 28 H 0.126 0.874 29 H -0.303 1.303 30 H -0.285 1.285 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.424 0.576 38 H 0.069 0.931 39 H 0.148 0.852 40 H 0.217 0.783 41 H 0.212 0.788 42 H 0.143 0.857 43 H 0.085 0.915 44 H 0.140 0.860 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -6.852 -2.710 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.667 3.333 4 C -0.159 4.159 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.079 3.921 8 O -0.235 6.235 9 C -0.005 4.005 10 C -0.173 4.173 11 C 0.310 3.690 12 O -0.460 6.460 13 N -0.354 5.354 14 C 0.009 3.991 15 H 0.116 0.884 16 C -0.175 4.175 17 C -0.001 4.001 18 H 0.162 0.838 19 N -0.064 5.064 20 C -0.190 4.190 21 C -0.222 4.222 22 N -0.179 5.179 23 N -0.097 5.097 24 C -0.177 4.177 25 C -0.228 4.228 26 C -0.099 4.099 27 H 0.234 0.766 28 H 0.144 0.856 29 H -0.231 1.231 30 H -0.212 1.212 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.262 0.738 38 H 0.087 0.913 39 H 0.166 0.834 40 H 0.233 0.767 41 H 0.229 0.771 42 H 0.161 0.839 43 H 0.104 0.896 44 H 0.158 0.842 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.009 -6.248 -1.852 6.819 hybrid contribution -1.274 0.379 -0.289 1.360 sum 0.735 -5.869 -2.141 6.290 Atomic orbital electron populations 1.86567 1.18674 1.80310 1.50154 1.25103 0.83264 1.11354 0.98693 0.94126 0.90499 0.72551 0.76172 1.20237 1.02659 0.95182 0.97840 1.20993 0.96567 0.93688 0.96459 1.20674 1.01773 1.01387 0.93865 1.19168 0.94511 0.91304 0.87124 1.85958 1.69241 1.38818 1.29461 1.22484 0.95859 0.93655 0.88486 1.21448 1.03067 0.99233 0.93551 1.20653 0.78254 0.87498 0.82628 1.90749 1.59764 1.18016 1.77430 1.45722 1.55735 1.14129 1.19816 1.22618 0.91515 0.97041 0.87902 0.88444 1.23811 0.93197 1.05241 0.95247 1.22697 1.00886 0.78254 0.98262 0.83763 1.47472 1.44137 1.09314 1.05484 1.24091 1.07977 0.85151 1.01809 1.24197 1.06511 1.02867 0.88578 1.75101 1.18141 1.00075 1.24603 1.78264 1.20291 1.09465 1.01689 1.23957 0.96543 1.06671 0.90570 1.21407 1.06460 0.93923 1.01004 1.21026 0.96023 1.00070 0.92808 0.76588 0.85619 1.23148 1.21228 0.84207 0.83996 0.91273 0.91964 0.85687 0.85110 0.73774 0.91260 0.83445 0.76652 0.77110 0.83869 0.89634 0.84203 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.53 12.83 -148.98 -1.91 -3.44 16 2 C -0.07 0.03 2.80 71.24 0.20 0.23 16 3 Si 0.76 -1.00 29.88 68.60 2.05 1.05 16 4 C -0.16 -0.07 5.35 -19.85 -0.11 -0.18 16 5 C -0.06 -0.05 9.68 22.25 0.22 0.17 16 6 C -0.16 -0.21 9.99 22.36 0.22 0.01 16 7 C 0.12 0.27 6.69 22.50 0.15 0.42 16 8 O -0.32 -0.20 10.14 -92.41 -0.94 -1.14 16 9 C 0.07 -0.19 4.03 71.98 0.29 0.10 16 10 C -0.13 1.19 6.07 29.85 0.18 1.37 16 11 C 0.52 -2.69 7.83 87.66 0.69 -2.01 16 12 O -0.58 -2.27 15.58 -3.05 -0.05 -2.32 16 13 N -0.70 7.88 5.35 -440.03 -2.36 5.53 16 14 C 0.11 -1.04 3.82 45.52 0.17 -0.87 16 15 H 0.10 -0.34 6.31 -2.39 -0.02 -0.36 16 16 C -0.14 1.44 7.63 31.12 0.24 1.68 16 17 C 0.10 -0.79 5.10 45.52 0.23 -0.56 16 18 H 0.14 -1.47 8.14 -2.39 -0.02 -1.49 16 19 N -0.27 -0.28 3.52 -324.68 -1.14 -1.43 16 20 C -0.04 0.02 9.69 83.49 0.81 0.83 16 21 C -0.06 -0.26 12.05 83.73 1.01 0.75 16 22 N -0.31 -3.71 12.41 -58.26 -0.72 -4.44 16 23 N -0.12 -1.14 13.16 37.02 0.49 -0.65 16 24 C -0.14 1.62 7.13 31.12 0.22 1.84 16 25 C -0.21 -0.23 9.04 22.37 0.20 -0.03 16 26 C -0.08 -0.01 8.66 22.25 0.19 0.19 16 27 H 0.39 -0.94 8.70 -74.06 -0.64 -1.59 16 28 H 0.13 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H -0.30 -1.94 7.11 99.48 0.71 -1.24 16 30 H -0.29 -0.75 7.01 99.48 0.70 -0.06 16 31 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 32 H 0.14 -0.17 8.06 -2.91 -0.02 -0.20 16 33 H 0.07 -0.12 7.62 -2.39 -0.02 -0.14 16 34 H 0.06 -0.05 7.62 -2.39 -0.02 -0.07 16 35 H 0.13 -1.49 8.14 -2.39 -0.02 -1.51 16 36 H 0.13 -1.70 8.14 -2.38 -0.02 -1.72 16 37 H 0.42 -7.62 8.73 -92.71 -0.81 -8.43 16 38 H 0.07 -0.38 8.14 -2.38 -0.02 -0.40 16 39 H 0.15 -2.51 8.12 -2.39 -0.02 -2.53 16 40 H 0.22 -1.45 6.75 -2.91 -0.02 -1.47 16 41 H 0.21 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.14 -2.38 8.14 -2.39 -0.02 -2.40 16 43 H 0.09 -0.84 6.99 -2.38 -0.02 -0.86 16 44 H 0.14 -0.12 6.30 -2.91 -0.02 -0.14 16 45 H 0.14 -0.44 4.84 -2.91 -0.01 -0.45 16 Total: 0.00 -28.85 377.36 -0.04 -28.89 By element: Atomic # 1 Polarization: -25.63 SS G_CDS: -0.38 Total: -26.00 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.92 Total: 3.95 kcal Atomic # 7 Polarization: 2.75 SS G_CDS: -3.73 Total: -0.99 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -2.90 Total: -6.90 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.05 Total: 1.05 kcal Total: -28.85 -0.04 -28.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_4549602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.255 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds