Wall clock time and date at job start Sun Mar 7 2021 09:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38251 * 119.97171 * 244.72845 * 4 2 1 6 6 C 1.38291 * 120.10949 * 179.72876 * 5 4 2 7 7 C 1.38120 * 120.05553 * 0.54736 * 6 5 4 8 8 C 1.38748 * 119.94543 * 359.72320 * 7 6 5 9 9 O 1.35905 * 120.05744 * 180.02562 * 8 7 6 10 10 C 1.42895 * 116.99779 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47149 * 179.97438 * 10 9 8 12 12 O 1.21275 * 119.99841 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00124 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00055 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.84950 * 336.20561 * 14 13 11 16 16 C 1.53784 * 113.60973 * 107.50843 * 14 13 11 17 17 C 1.53777 * 87.08165 * 89.11668 * 16 14 13 18 18 H 1.08994 * 113.69330 * 270.87204 * 17 16 14 19 19 N 1.46499 * 113.61282 * 139.97870 * 17 16 14 20 20 C 1.35313 * 125.87172 * 347.50319 * 19 17 16 21 21 C 1.35352 * 106.17856 * 179.97438 * 20 19 17 22 22 N 1.33776 * 106.49331 * 0.02562 * 21 20 19 23 23 N 1.28635 * 108.88451 * 359.73229 * 22 21 20 24 24 C 1.53776 * 113.61492 * 205.00216 * 14 13 11 25 25 C 1.38170 * 119.97456 * 65.00150 * 4 2 1 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.07997 * 119.94581 * 359.97438 * 5 4 2 31 31 H 1.08000 * 119.96851 * 180.29819 * 6 5 4 32 32 H 1.08000 * 120.02345 * 179.71079 * 7 6 5 33 33 H 1.09000 * 109.47413 * 300.00300 * 10 9 8 34 34 H 1.09006 * 109.47030 * 59.99852 * 10 9 8 35 35 H 0.97002 * 119.99760 * 0.02562 * 13 11 10 36 36 H 1.09001 * 113.61166 * 203.66945 * 16 14 13 37 37 H 1.09002 * 113.61381 * 334.56576 * 16 14 13 38 38 H 1.08002 * 126.90843 * 0.02562 * 20 19 17 39 39 H 1.07997 * 126.75094 * 179.97438 * 21 20 19 40 40 H 1.08996 * 113.61827 * 25.43871 * 24 14 13 41 41 H 1.09006 * 113.61445 * 156.33540 * 24 14 13 42 42 H 1.07998 * 120.02436 * 0.02584 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6435 -0.0127 2.1884 6 6 3.1008 -0.6604 3.3214 7 6 2.8567 -2.0089 3.4933 8 6 2.1470 -2.7126 2.5309 9 8 1.9051 -4.0394 2.6980 10 6 2.4114 -4.6462 3.8885 11 6 2.0485 -6.1088 3.9003 12 8 1.4187 -6.5847 2.9796 13 7 2.4247 -6.8882 4.9336 14 6 2.0714 -8.3099 4.9453 15 1 1.1992 -8.5344 4.3314 16 6 3.2658 -9.2435 4.6869 17 6 3.5007 -9.2346 6.2066 18 1 4.1542 -8.4303 6.5441 19 7 3.8801 -10.5414 6.7493 20 6 3.7993 -11.7245 6.0975 21 6 4.2488 -12.6633 6.9627 22 7 4.5778 -12.0171 8.0870 23 7 4.3525 -10.7609 7.9263 24 6 2.0038 -8.9162 6.3569 25 6 1.6844 -2.0594 1.3980 26 1 -0.3934 0.4417 0.7649 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.8396 1.0407 2.0535 31 1 3.6528 -0.1122 4.0705 32 1 3.2182 -2.5153 4.3762 33 1 3.4958 -4.5403 3.9175 34 1 1.9752 -4.1569 4.7595 35 1 2.9287 -6.5075 5.6698 36 1 2.9801 -10.2196 4.2948 37 1 4.0698 -8.7765 4.1180 38 1 3.4476 -11.8868 5.0893 39 1 4.3259 -13.7251 6.7814 40 1 1.7890 -8.1852 7.1363 41 1 1.3730 -9.8029 6.4215 42 1 1.1322 -2.6050 0.6471 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_4860298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:46:20 Heat of formation + Delta-G solvation = 64.753073 kcal Electronic energy + Delta-G solvation = -26598.864093 eV Core-core repulsion = 22549.841220 eV Total energy + Delta-G solvation = -4049.022873 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.27407 -41.71555 -41.07865 -39.74136 -38.80975 -37.22506 -35.28986 -33.52637 -32.47033 -32.01086 -31.61319 -29.37957 -27.09191 -26.93298 -26.49931 -23.68363 -23.66755 -23.20706 -22.63953 -21.71692 -20.65899 -19.40127 -19.00156 -18.38272 -17.70668 -17.48998 -17.34742 -17.28093 -17.00203 -16.71358 -16.18512 -16.01303 -15.71913 -15.59687 -15.32044 -15.11641 -14.80152 -14.62477 -14.19472 -14.05774 -13.95437 -13.75901 -13.42361 -13.39867 -12.92828 -12.76587 -12.61062 -12.37774 -12.13844 -12.05734 -12.02226 -11.68837 -11.66495 -11.10229 -11.01076 -10.49458 -10.38189 -10.33316 -9.93827 -9.28720 -4.99386 0.20584 0.38903 0.61144 1.26424 1.34923 1.40065 1.42294 1.59147 1.65359 1.97176 2.51437 2.67233 2.92440 3.13722 3.41264 3.49361 3.53529 3.62141 3.67992 3.68852 3.84089 4.00816 4.07192 4.12962 4.14362 4.24094 4.24923 4.29634 4.34170 4.42146 4.49233 4.50463 4.62999 4.67001 4.72525 4.79748 4.84654 4.97737 5.22725 5.24019 5.30524 5.37115 5.45132 5.67531 5.69144 6.22473 6.39496 6.74797 7.03147 7.49835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.794 3.206 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.035 3.965 11 C 0.520 3.480 12 O -0.566 6.566 13 N -0.695 5.695 14 C 0.129 3.871 15 H 0.106 0.894 16 C -0.146 4.146 17 C 0.108 3.892 18 H 0.148 0.852 19 N -0.276 5.276 20 C -0.038 4.038 21 C -0.067 4.067 22 N -0.318 5.318 23 N -0.124 5.124 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.396 0.604 27 H 0.100 0.900 28 H -0.282 1.282 29 H -0.302 1.302 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.228 0.772 39 H 0.212 0.788 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 4.642 3.387 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.194 4.194 3 Si 0.699 3.301 4 C -0.086 4.086 5 C -0.174 4.174 6 C -0.089 4.089 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.042 4.042 11 C 0.307 3.693 12 O -0.443 6.443 13 N -0.350 5.350 14 C 0.023 3.977 15 H 0.124 0.876 16 C -0.185 4.185 17 C 0.007 3.993 18 H 0.165 0.835 19 N -0.070 5.070 20 C -0.189 4.189 21 C -0.225 4.225 22 N -0.183 5.183 23 N -0.103 5.103 24 C -0.175 4.175 25 C -0.169 4.169 26 H 0.246 0.754 27 H 0.117 0.883 28 H -0.208 1.208 29 H -0.230 1.230 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.262 0.738 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.244 0.756 39 H 0.228 0.772 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.651 5.098 3.021 6.152 hybrid contribution -0.035 -1.306 -1.053 1.678 sum 1.616 3.793 1.968 4.568 Atomic orbital electron populations 1.86482 1.17349 1.82298 1.50466 1.25404 0.85320 1.11758 0.96923 0.93573 0.77720 0.74200 0.84626 1.20203 0.98237 0.93123 0.97035 1.21217 1.00655 1.00598 0.94884 1.21351 0.96771 0.93625 0.97110 1.21640 1.03482 0.96333 1.00545 1.19163 0.96271 0.82328 0.95302 1.86117 1.74647 1.20816 1.42065 1.22753 1.02700 0.90069 0.88720 1.20494 0.78473 0.88447 0.81935 1.90786 1.40547 1.75860 1.37134 1.45350 1.57672 1.08569 1.23416 1.21539 0.98560 0.79830 0.97774 0.87604 1.23970 0.99622 1.02592 0.92335 1.23866 0.98492 0.81069 0.95834 0.83467 1.47768 1.39769 1.09700 1.09774 1.24211 1.07281 0.84168 1.03236 1.24224 1.04806 1.03188 0.90251 1.75092 1.19474 0.98550 1.25202 1.78248 1.17083 1.12488 1.02487 1.23772 0.93451 1.02873 0.97421 1.20302 1.04310 0.94593 0.97744 0.75435 0.88264 1.20830 1.23045 0.83266 0.81928 0.82025 0.85569 0.85448 0.73827 0.86173 0.88600 0.75576 0.77164 0.87647 0.87504 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.33 12.83 -148.98 -1.91 -3.25 16 2 C -0.09 -0.09 2.80 71.24 0.20 0.11 16 3 Si 0.79 -2.09 29.80 68.60 2.04 -0.05 16 4 C -0.09 -0.10 5.35 -19.88 -0.11 -0.21 16 5 C -0.16 0.55 8.67 22.29 0.19 0.74 16 6 C -0.07 0.42 10.04 22.25 0.22 0.64 16 7 C -0.20 0.93 9.04 22.36 0.20 1.13 16 8 C 0.11 0.27 6.69 22.51 0.15 0.42 16 9 O -0.32 -1.40 9.67 -73.45 -0.71 -2.11 16 10 C 0.04 -0.22 5.22 71.24 0.37 0.15 16 11 C 0.52 -0.99 7.91 87.66 0.69 -0.29 16 12 O -0.57 -5.70 16.10 16.02 0.26 -5.44 16 13 N -0.70 7.02 5.26 -440.05 -2.32 4.70 16 14 C 0.13 -1.15 4.32 45.52 0.20 -0.96 16 15 H 0.11 -0.47 7.46 -2.39 -0.02 -0.49 16 16 C -0.15 1.54 7.22 31.12 0.22 1.77 16 17 C 0.11 -0.95 4.84 45.52 0.22 -0.73 16 18 H 0.15 -1.71 8.14 -2.39 -0.02 -1.73 16 19 N -0.28 0.26 3.53 -324.68 -1.15 -0.89 16 20 C -0.04 0.13 10.78 83.49 0.90 1.03 16 21 C -0.07 -0.12 12.05 83.73 1.01 0.89 16 22 N -0.32 -3.27 12.41 -58.25 -0.72 -3.99 16 23 N -0.12 -0.99 13.16 37.02 0.49 -0.50 16 24 C -0.14 1.41 7.62 31.12 0.24 1.65 16 25 C -0.15 -0.79 9.62 22.37 0.22 -0.58 16 26 H 0.40 -2.51 8.70 -74.06 -0.64 -3.16 16 27 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 28 H -0.28 -0.38 7.11 99.48 0.71 0.32 16 29 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 30 H 0.15 -1.23 4.90 -2.91 -0.01 -1.25 16 31 H 0.16 -1.96 8.06 -2.91 -0.02 -1.99 16 32 H 0.16 -1.93 6.30 -2.91 -0.02 -1.95 16 33 H 0.13 -1.62 7.66 -2.39 -0.02 -1.63 16 34 H 0.13 -1.64 7.66 -2.38 -0.02 -1.65 16 35 H 0.42 -7.35 8.70 -92.71 -0.81 -8.15 16 36 H 0.12 -1.51 6.33 -2.39 -0.02 -1.53 16 37 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.23 -2.79 6.73 -2.91 -0.02 -2.81 16 39 H 0.21 -0.91 8.06 -2.91 -0.02 -0.94 16 40 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 41 H 0.11 -0.97 8.14 -2.38 -0.02 -0.99 16 42 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -36.18 358.31 0.59 -35.59 By element: Atomic # 1 Polarization: -29.51 SS G_CDS: -0.33 Total: -29.83 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 4.93 Total: 5.76 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -3.70 Total: -0.68 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -2.36 Total: -10.80 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.04 Total: -0.05 kcal Total: -36.18 0.59 -35.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_4860298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.347 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds