Wall clock time and date at job start Sun Mar 7 2021 09:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.47193 * 2 1 4 4 C 1.50706 * 109.47490 * 120.00224 * 2 1 3 5 5 C 1.34232 * 126.49997 * 255.31236 * 4 2 1 6 6 N 1.36827 * 109.93770 * 180.13328 * 5 4 2 7 7 C 1.46501 * 125.06471 * 179.85756 * 6 5 4 8 8 C 1.50698 * 109.46873 * 264.69486 * 7 6 5 9 9 O 1.21280 * 120.00213 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00174 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.84751 * 336.18919 * 11 10 8 13 13 C 1.53779 * 113.61557 * 107.49471 * 11 10 8 14 14 C 1.53787 * 87.07697 * 139.98153 * 13 11 10 15 15 H 1.09003 * 113.69102 * 220.00996 * 14 13 11 16 16 N 1.46496 * 113.61398 * 89.11964 * 14 13 11 17 17 C 1.35314 * 125.86616 * 347.49992 * 16 14 13 18 18 C 1.35358 * 106.17498 * 180.02562 * 17 16 14 19 19 N 1.33767 * 106.49287 * 0.26477 * 18 17 16 20 20 N 1.28632 * 108.88855 * 359.56308 * 19 18 17 21 21 C 1.53775 * 87.08404 * 334.56997 * 14 13 11 22 22 C 1.37693 * 109.87458 * 359.58836 * 6 5 4 23 23 C 1.39090 * 133.51434 * 180.26690 * 22 6 5 24 24 C 1.37793 * 119.77584 * 179.97438 * 23 22 6 25 25 C 1.38795 * 120.66740 * 359.97438 * 24 23 22 26 26 C 1.36658 * 120.52543 * 0.02562 * 25 24 23 27 27 C 1.39592 * 119.76543 * 359.97438 * 26 25 24 28 28 H 0.96696 * 114.00183 * 59.99628 * 1 2 3 29 29 H 1.09004 * 109.47390 * 240.00083 * 2 1 3 30 30 H 1.48500 * 109.99700 * 60.00091 * 3 2 1 31 31 H 1.48502 * 110.00334 * 181.32022 * 3 2 1 32 32 H 1.08004 * 125.03144 * 359.97438 * 5 4 2 33 33 H 1.08997 * 109.47725 * 144.69588 * 7 6 5 34 34 H 1.08996 * 109.46933 * 24.69005 * 7 6 5 35 35 H 0.97001 * 119.99954 * 359.97438 * 10 8 7 36 36 H 1.09003 * 113.61534 * 25.43993 * 13 11 10 37 37 H 1.08990 * 113.62028 * 254.52775 * 13 11 10 38 38 H 1.08004 * 126.91628 * 0.06220 * 17 16 14 39 39 H 1.08002 * 126.74926 * 179.97438 * 18 17 16 40 40 H 1.09002 * 113.61798 * 139.98111 * 21 14 13 41 41 H 1.08999 * 113.61525 * 270.88495 * 21 14 13 42 42 H 1.07996 * 120.11273 * 359.95001 * 23 22 6 43 43 H 1.07993 * 119.66262 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.73349 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.11764 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4555 -0.1373 2.3253 6 7 2.8023 -1.0990 3.2347 7 6 3.4061 -0.8404 4.5442 8 6 4.9044 -0.9628 4.4394 9 8 5.4174 -1.2394 3.3758 10 7 5.6745 -0.7660 5.5279 11 6 7.1311 -0.8845 5.4259 12 1 7.4474 -1.5113 4.5921 13 6 7.8655 0.4647 5.4981 14 6 8.9206 -0.2453 6.3628 15 1 9.2826 0.3580 7.1954 16 7 10.0047 -0.8514 5.5859 17 6 10.0125 -1.0357 4.2454 18 6 11.1961 -1.6233 3.9524 19 7 11.8435 -1.7731 5.1134 20 7 11.1133 -1.3007 6.0612 21 6 7.8151 -1.2389 6.7568 22 6 2.4936 -2.3457 2.7384 23 6 2.6282 -3.6362 3.2395 24 6 2.2143 -4.7108 2.4826 25 6 1.6630 -4.5193 1.2234 26 6 1.5215 -3.2600 0.7118 27 6 1.9341 -2.1571 1.4613 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4678 1.2085 31 1 3.5346 1.7704 -0.0322 32 1 2.5867 0.9254 2.4663 33 1 3.0320 -1.5658 5.2666 34 1 3.1459 0.1661 4.8719 35 1 5.2643 -0.5452 6.3787 36 1 7.3105 1.2359 6.0321 37 1 8.2473 0.8060 4.5360 38 1 9.2316 -0.7674 3.5492 39 1 11.5467 -1.9179 2.9743 40 1 8.1562 -2.2727 6.8109 41 1 7.2462 -0.9334 7.6350 42 1 3.0559 -3.7956 4.2182 43 1 2.3193 -5.7120 2.8736 44 1 1.3440 -5.3723 0.6429 45 1 1.0912 -3.1186 -0.2687 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567748_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:47:04 Heat of formation + Delta-G solvation = 144.427959 kcal Electronic energy + Delta-G solvation = -30678.790025 eV Core-core repulsion = 26474.488495 eV Total energy + Delta-G solvation = -4204.301530 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.44572 -42.64990 -41.27119 -39.70408 -38.10906 -37.59131 -35.40088 -34.30521 -33.41060 -32.11624 -31.51286 -30.37468 -29.21034 -27.14483 -26.83760 -25.59094 -23.93818 -23.70235 -23.39415 -22.66545 -21.81439 -21.11542 -20.61447 -18.77883 -18.58172 -18.27024 -18.15012 -17.82933 -17.60208 -17.00639 -16.54354 -16.47061 -16.29043 -15.87146 -15.59042 -15.48273 -15.04090 -14.97564 -14.88715 -14.72258 -14.58705 -14.19314 -13.95528 -13.73593 -13.66732 -13.59111 -13.35052 -12.85901 -12.77584 -12.65396 -12.48912 -12.43993 -12.09818 -12.05797 -11.86924 -11.82423 -11.31174 -11.10784 -10.64784 -10.49197 -10.32371 -10.18006 -9.26656 -8.74079 -4.96404 0.03878 0.47278 0.56010 1.24615 1.27867 1.30917 1.32846 1.46808 1.49239 1.69718 1.97017 2.06739 2.82227 2.87699 3.09024 3.36400 3.45724 3.47823 3.50367 3.60236 3.66062 3.73763 3.80835 3.97162 4.00285 4.02583 4.14600 4.17318 4.17959 4.21826 4.27997 4.35399 4.46332 4.50662 4.56504 4.60743 4.65445 4.70743 4.73574 4.80019 4.83272 5.06410 5.11033 5.23160 5.43230 5.57580 5.57958 5.64148 5.65420 6.04059 6.14181 6.34085 6.99368 6.99923 7.37427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.048 4.048 3 Si 0.785 3.215 4 C -0.180 4.180 5 C 0.055 3.945 6 N -0.467 5.467 7 C 0.085 3.915 8 C 0.494 3.506 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.115 3.885 12 H 0.091 0.909 13 C -0.139 4.139 14 C 0.102 3.898 15 H 0.148 0.852 16 N -0.270 5.270 17 C -0.041 4.041 18 C -0.062 4.062 19 N -0.312 5.312 20 N -0.115 5.115 21 C -0.132 4.132 22 C 0.091 3.909 23 C -0.136 4.136 24 C -0.103 4.103 25 C -0.152 4.152 26 C -0.083 4.083 27 C -0.120 4.120 28 H 0.399 0.601 29 H 0.073 0.927 30 H -0.279 1.279 31 H -0.299 1.299 32 H 0.178 0.822 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.426 0.574 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.211 0.789 39 H 0.212 0.788 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 5.560 2.544 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.158 4.158 3 Si 0.689 3.311 4 C -0.188 4.188 5 C -0.070 4.070 6 N -0.150 5.150 7 C -0.040 4.040 8 C 0.279 3.721 9 O -0.446 6.446 10 N -0.350 5.350 11 C 0.009 3.991 12 H 0.109 0.891 13 C -0.178 4.178 14 C 0.000 4.000 15 H 0.166 0.834 16 N -0.064 5.064 17 C -0.193 4.193 18 C -0.220 4.220 19 N -0.177 5.177 20 N -0.094 5.094 21 C -0.171 4.171 22 C -0.014 4.014 23 C -0.156 4.156 24 C -0.122 4.122 25 C -0.171 4.171 26 C -0.101 4.101 27 C -0.124 4.124 28 H 0.249 0.751 29 H 0.091 0.909 30 H -0.205 1.205 31 H -0.226 1.226 32 H 0.194 0.806 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.265 0.735 36 H 0.164 0.836 37 H 0.099 0.901 38 H 0.228 0.772 39 H 0.228 0.772 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.775 5.500 4.373 8.496 hybrid contribution -0.349 -0.502 -0.632 0.880 sum -5.124 4.998 3.740 8.076 Atomic orbital electron populations 1.86480 1.17709 1.82423 1.50902 1.24261 0.85311 1.10752 0.95452 0.94164 0.76855 0.74479 0.85626 1.20048 1.09650 0.91861 0.97224 1.21728 1.01467 0.94420 0.89395 1.43372 1.52243 1.03787 1.15587 1.22018 0.89085 1.08935 0.83926 1.21400 0.90405 0.76069 0.84181 1.90803 1.75594 1.48204 1.30048 1.45670 1.05924 1.70930 1.12429 1.22610 0.79777 0.97555 0.99154 0.89061 1.23962 0.94450 0.98231 1.01200 1.22702 0.83966 0.97094 0.96217 0.83410 1.47469 1.13727 1.38516 1.06704 1.24024 1.02697 1.06322 0.86230 1.24177 0.93608 1.04617 0.99560 1.75101 1.25637 1.18221 0.98711 1.78256 0.93292 1.15014 1.22806 1.23806 0.94597 0.99724 0.99015 1.18449 1.01581 0.86918 0.94474 1.20252 1.04967 0.88848 1.01552 1.21191 0.97692 0.99004 0.94351 1.20973 1.02082 0.97094 0.96902 1.20499 0.98617 0.91371 0.99639 1.19361 1.04437 0.93513 0.95087 0.75077 0.90948 1.20523 1.22629 0.80559 0.83496 0.82386 0.73486 0.83620 0.90102 0.77212 0.77162 0.91186 0.83040 0.84831 0.83375 0.83979 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.60 12.86 -148.98 -1.92 -3.52 16 2 C -0.05 -0.16 3.05 71.24 0.22 0.06 16 3 Si 0.78 -1.03 30.80 68.60 2.11 1.09 16 4 C -0.18 -1.66 5.61 -18.62 -0.10 -1.77 16 5 C 0.06 0.34 9.89 83.00 0.82 1.16 16 6 N -0.47 -1.98 2.27 -520.01 -1.18 -3.16 16 7 C 0.08 -0.54 6.48 85.63 0.56 0.01 16 8 C 0.49 -1.22 7.90 87.66 0.69 -0.53 16 9 O -0.57 -5.31 16.02 -3.03 -0.05 -5.36 16 10 N -0.70 7.31 5.35 -440.04 -2.36 4.96 16 11 C 0.11 -0.89 3.82 45.52 0.17 -0.72 16 12 H 0.09 -0.08 6.30 -2.39 -0.02 -0.09 16 13 C -0.14 1.47 7.13 31.12 0.22 1.69 16 14 C 0.10 -0.73 5.11 45.52 0.23 -0.50 16 15 H 0.15 -1.48 8.14 -2.39 -0.02 -1.50 16 16 N -0.27 -0.57 3.52 -324.66 -1.14 -1.71 16 17 C -0.04 -0.06 9.68 83.49 0.81 0.75 16 18 C -0.06 -0.34 12.05 83.73 1.01 0.67 16 19 N -0.31 -3.95 12.41 -58.25 -0.72 -4.67 16 20 N -0.11 -1.19 13.16 37.02 0.49 -0.70 16 21 C -0.13 1.36 7.63 31.12 0.24 1.59 16 22 C 0.09 0.80 6.80 39.03 0.27 1.07 16 23 C -0.14 -0.77 10.00 22.37 0.22 -0.54 16 24 C -0.10 -0.48 10.01 22.30 0.22 -0.26 16 25 C -0.15 -0.90 9.97 22.03 0.22 -0.68 16 26 C -0.08 -0.76 10.05 22.23 0.22 -0.54 16 27 C -0.12 -1.38 6.35 -20.20 -0.13 -1.51 16 28 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 29 H 0.07 0.13 7.96 -2.39 -0.02 0.11 16 30 H -0.28 -0.70 7.04 99.48 0.70 0.00 16 31 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 32 H 0.18 0.28 6.30 -2.91 -0.02 0.27 16 33 H 0.15 -1.75 8.14 -2.39 -0.02 -1.77 16 34 H 0.16 -2.20 8.11 -2.39 -0.02 -2.22 16 35 H 0.43 -7.94 8.73 -92.71 -0.81 -8.75 16 36 H 0.15 -2.34 8.14 -2.39 -0.02 -2.36 16 37 H 0.08 -0.63 6.98 -2.39 -0.02 -0.64 16 38 H 0.21 -0.81 6.74 -2.91 -0.02 -0.83 16 39 H 0.21 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.15 -2.64 8.12 -2.39 -0.02 -2.66 16 42 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 43 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 44 H 0.14 0.16 8.06 -2.91 -0.02 0.14 16 45 H 0.13 0.85 8.06 -2.91 -0.02 0.82 16 Total: 0.00 -38.88 382.92 0.75 -38.12 By element: Atomic # 1 Polarization: -24.62 SS G_CDS: -0.37 Total: -25.00 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.89 Total: -0.04 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -4.91 Total: -5.29 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -1.96 Total: -8.88 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.11 Total: 1.09 kcal Total: -38.88 0.75 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567748_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.549 kcal (2) G-P(sol) polarization free energy of solvation -38.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds