Wall clock time and date at job start Sun Mar 7 2021 10:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99915 * 2 1 4 4 C 1.39150 * 120.07552 * 179.97438 * 3 2 1 5 5 O 1.36001 * 120.07311 * 0.04094 * 4 3 2 6 6 C 1.42890 * 117.00645 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47569 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99942 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00463 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00528 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.84862 * 23.80791 * 10 9 7 12 12 C 1.53782 * 113.61611 * 154.99826 * 10 9 7 13 13 C 1.53781 * 87.08103 * 139.98110 * 12 10 9 14 14 H 1.09001 * 113.61161 * 89.11582 * 13 12 10 15 15 N 1.46497 * 113.61648 * 219.93587 * 13 12 10 16 16 C 1.34940 * 126.03785 * 85.00239 * 15 13 12 17 17 C 1.35319 * 107.74787 * 179.97438 * 16 15 13 18 18 C 1.39871 * 107.92012 * 359.97438 * 17 16 15 19 19 N 1.30836 * 108.19964 * 359.74029 * 18 17 16 20 20 C 1.53780 * 87.08348 * 334.57079 * 13 12 10 21 21 C 1.38562 * 119.86093 * 180.02562 * 4 3 2 22 22 C 1.38247 * 119.99672 * 359.97438 * 21 4 3 23 23 N 1.47996 * 119.92767 * 180.02562 * 22 21 4 24 24 O 1.21800 * 120.00083 * 0.02562 * 23 22 21 25 25 O 1.21807 * 120.00186 * 180.02562 * 23 22 21 26 26 C 1.38255 * 120.14202 * 359.72841 * 22 21 4 27 27 C 1.50703 * 119.92365 * 180.27417 * 26 22 21 28 28 O 1.42895 * 109.47199 * 75.27893 * 27 26 22 29 29 Si 1.86305 * 109.47136 * 195.27898 * 27 26 22 30 30 C 1.38238 * 120.15035 * 0.55875 * 26 22 21 31 31 H 1.08998 * 109.47635 * 300.00056 * 1 2 3 32 32 H 1.09004 * 109.46842 * 60.00418 * 1 2 3 33 33 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47338 * 300.00459 * 6 5 4 35 35 H 1.09004 * 109.47528 * 59.99488 * 6 5 4 36 36 H 0.97004 * 119.99729 * 0.02562 * 9 7 6 37 37 H 1.09004 * 113.61627 * 254.53423 * 12 10 9 38 38 H 1.09004 * 113.61392 * 25.43827 * 12 10 9 39 39 H 1.08004 * 126.12782 * 359.97438 * 16 15 13 40 40 H 1.08000 * 126.04012 * 180.02562 * 17 16 15 41 41 H 1.07996 * 125.90029 * 180.02562 * 18 17 16 42 42 H 1.08997 * 113.61301 * 270.88295 * 20 13 12 43 43 H 1.09001 * 113.61753 * 139.97847 * 20 13 12 44 44 H 1.08001 * 120.00630 * 179.97438 * 21 4 3 45 45 H 1.08999 * 109.47267 * 315.27661 * 27 26 22 46 46 H 0.96708 * 113.99772 * 59.99976 * 28 27 26 47 47 H 1.48503 * 109.99789 * 58.68237 * 29 27 26 48 48 H 1.48495 * 109.99870 * 180.02562 * 29 27 26 49 49 H 1.08002 * 120.00519 * 179.72186 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1796 0.1477 0.0002 6 6 5.6002 0.3006 0.0014 7 6 6.2518 -1.0582 0.0002 8 8 5.5669 -2.0591 -0.0019 9 7 7.5956 -1.1613 0.0005 10 6 8.2291 -2.4822 -0.0001 11 1 7.5835 -3.2610 -0.4062 12 6 9.6470 -2.4852 -0.5953 13 6 10.0319 -3.4615 0.5288 14 1 9.8796 -4.5090 0.2684 15 7 11.3553 -3.2044 1.1020 16 6 11.6372 -2.3247 2.0856 17 6 12.9672 -2.3878 2.3267 18 6 13.5169 -3.3391 1.4612 19 7 12.5506 -3.8336 0.7306 20 6 8.8772 -2.8553 1.3437 21 6 4.0603 2.5233 0.0011 22 6 3.3029 3.6798 0.0005 23 7 3.9714 5.0002 0.0005 24 8 5.1876 5.0671 0.0005 25 8 3.3054 6.0201 0.0005 26 6 1.9224 3.6056 -0.0062 27 6 1.1016 4.8695 -0.0130 28 8 1.1358 5.4527 -1.3171 29 14 -0.6600 4.4685 0.4419 30 6 1.2932 2.3748 -0.0008 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 5.9072 0.8511 -0.8879 35 1 5.9059 0.8498 0.8920 36 1 8.1434 -0.3607 0.0018 37 1 9.7014 -2.9233 -1.5919 38 1 10.1510 -1.5210 -0.5276 39 1 10.9283 -1.6848 2.5900 40 1 13.5085 -1.8068 3.0588 41 1 14.5582 -3.6206 1.4085 42 1 9.1706 -1.9923 1.9413 43 1 8.3100 -3.5921 1.9123 44 1 5.1386 2.5840 0.0019 45 1 1.5125 5.5735 0.7107 46 1 0.7845 4.8805 -2.0131 47 1 -0.7059 3.8323 1.7830 48 1 -1.4799 5.7066 0.4382 49 1 0.2146 2.3196 -0.0015 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567756_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:38:16 Heat of formation + Delta-G solvation = 25.228640 kcal Electronic energy + Delta-G solvation = -37793.679823 eV Core-core repulsion = 32503.132706 eV Total energy + Delta-G solvation = -5290.547117 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.151 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.28022 -42.41905 -42.15219 -41.25946 -40.13787 -39.38049 -39.04806 -37.59770 -37.11286 -35.11186 -32.78111 -32.68331 -32.21331 -30.98947 -30.01624 -29.03780 -27.91057 -27.22493 -26.19371 -25.59509 -23.98989 -23.25594 -22.58347 -22.22058 -21.73393 -20.77711 -20.57639 -19.73023 -19.60862 -18.89260 -18.76728 -18.52812 -18.31293 -17.90839 -17.79333 -17.45156 -17.10303 -16.94317 -16.68397 -16.50990 -16.17279 -15.78179 -15.77721 -15.59401 -15.30901 -15.13698 -14.93073 -14.45967 -14.31075 -14.24036 -14.06357 -14.01308 -13.71375 -13.59532 -13.45524 -13.18963 -12.87237 -12.77896 -12.63762 -12.57649 -12.53746 -12.31897 -12.23445 -12.17150 -11.98237 -11.70735 -11.58777 -11.14721 -10.62131 -10.57344 -10.45855 -10.36336 -9.58969 -9.54956 -5.30359 -1.27122 -0.56103 0.27486 0.38964 0.90663 0.98790 1.00469 1.21900 1.41261 1.48164 1.66692 1.79995 1.81692 1.93868 2.15721 2.83886 2.86097 3.02946 3.08329 3.13759 3.24499 3.30338 3.36745 3.41276 3.48218 3.56662 3.61321 3.75167 3.77649 3.80909 3.90662 3.92253 3.92784 4.11766 4.18085 4.20604 4.23024 4.26035 4.34665 4.45714 4.50485 4.57127 4.61737 4.66230 4.70418 4.86314 5.08839 5.09104 5.37287 5.43479 5.71561 5.85953 6.03015 6.06841 6.40624 6.74111 6.76862 6.83008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.284 6.284 3 C 0.171 3.829 4 C 0.109 3.891 5 O -0.265 6.265 6 C 0.031 3.969 7 C 0.521 3.479 8 O -0.505 6.505 9 N -0.715 5.715 10 C 0.132 3.868 11 H 0.129 0.871 12 C -0.153 4.153 13 C 0.141 3.859 14 H 0.128 0.872 15 N -0.363 5.363 16 C 0.051 3.949 17 C -0.272 4.272 18 C 0.046 3.954 19 N -0.295 5.295 20 C -0.159 4.159 21 C -0.118 4.118 22 C -0.025 4.025 23 N 0.032 4.968 24 O -0.173 6.173 25 O -0.130 6.130 26 C -0.042 4.042 27 C -0.074 4.074 28 O -0.515 6.515 29 Si 0.674 3.326 30 C -0.177 4.177 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.406 0.594 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.171 0.829 40 H 0.148 0.852 41 H 0.184 0.816 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.166 0.834 45 H 0.140 0.860 46 H 0.374 0.626 47 H -0.252 1.252 48 H -0.242 1.242 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -1.990 -0.227 3.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C 0.123 3.877 4 C 0.061 3.939 5 O -0.176 6.176 6 C -0.048 4.048 7 C 0.305 3.695 8 O -0.377 6.377 9 N -0.369 5.369 10 C 0.027 3.973 11 H 0.146 0.854 12 C -0.192 4.192 13 C 0.038 3.962 14 H 0.146 0.854 15 N -0.145 5.145 16 C -0.095 4.095 17 C -0.301 4.301 18 C -0.141 4.141 19 N -0.116 5.116 20 C -0.199 4.199 21 C -0.138 4.138 22 C -0.109 4.109 23 N 0.551 4.449 24 O -0.384 6.384 25 O -0.350 6.350 26 C -0.044 4.044 27 C -0.185 4.185 28 O -0.319 6.319 29 Si 0.574 3.426 30 C -0.196 4.196 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.188 0.812 40 H 0.166 0.834 41 H 0.201 0.799 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.184 0.816 45 H 0.157 0.843 46 H 0.220 0.780 47 H -0.176 1.176 48 H -0.166 1.166 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.646 -4.021 -0.315 6.152 hybrid contribution 1.408 1.820 0.961 2.494 sum -3.238 -2.200 0.646 3.968 Atomic orbital electron populations 1.23426 0.76755 1.05811 1.02198 1.86342 1.22527 1.24207 1.86480 1.18444 0.89027 0.85911 0.94345 1.17836 0.88403 0.85284 1.02352 1.86330 1.16740 1.26074 1.88492 1.22651 0.80353 0.97041 1.04729 1.19893 0.82557 0.90266 0.76738 1.90817 1.62537 1.37814 1.46571 1.45696 1.05848 1.09220 1.76129 1.22258 0.92893 0.86081 0.96088 0.85362 1.23900 0.94606 1.00805 0.99931 1.22565 0.77322 1.01220 0.95055 0.85380 1.48627 1.06676 1.30384 1.28828 1.22457 0.97660 0.96078 0.93277 1.21575 0.93729 1.07263 1.07555 1.23972 0.99268 0.96147 0.94674 1.77411 0.90187 1.20188 1.23774 1.23989 0.95394 1.02298 0.98191 1.20799 1.02180 0.88975 1.01796 1.20400 0.91988 0.83150 1.15401 1.43380 1.00987 1.02615 0.97918 1.94541 0.95790 1.93720 1.54346 1.94577 1.64435 1.24065 1.51896 1.20108 0.91607 0.97075 0.95623 1.25482 1.08501 0.93332 0.91162 1.86713 1.86629 1.43454 1.15095 0.95580 0.76312 0.85326 0.85372 1.20908 1.00530 0.89590 1.08525 0.91717 0.91342 0.86746 0.88083 0.88173 0.75918 0.88904 0.88515 0.81190 0.83392 0.79904 0.88326 0.88849 0.81647 0.84346 0.77960 1.17635 1.16554 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 101.05 0.99 0.93 16 2 O -0.28 0.10 10.28 -34.20 -0.35 -0.25 16 3 C 0.17 -0.11 6.70 -39.12 -0.26 -0.38 16 4 C 0.11 -0.02 6.70 -39.12 -0.26 -0.28 16 5 O -0.26 -0.21 9.45 -47.37 -0.45 -0.66 16 6 C 0.03 -0.09 5.22 36.00 0.19 0.10 16 7 C 0.52 -0.42 7.91 -10.99 -0.09 -0.50 16 8 O -0.50 -2.05 16.10 -14.36 -0.23 -2.28 16 9 N -0.72 2.73 5.35 -53.02 -0.28 2.44 16 10 C 0.13 -0.43 4.24 -67.12 -0.28 -0.71 16 11 H 0.13 -0.24 7.46 -51.93 -0.39 -0.63 16 12 C -0.15 0.52 7.63 -25.92 -0.20 0.32 16 13 C 0.14 -0.28 5.03 -67.12 -0.34 -0.61 16 14 H 0.13 -0.26 8.14 -51.93 -0.42 -0.69 16 15 N -0.36 -0.25 3.81 -54.08 -0.21 -0.46 16 16 C 0.05 -0.02 10.69 -17.23 -0.18 -0.21 16 17 C -0.27 -0.10 10.80 -40.01 -0.43 -0.53 16 18 C 0.05 0.07 12.03 -17.36 -0.21 -0.14 16 19 N -0.30 -0.97 12.58 30.62 0.39 -0.58 16 20 C -0.16 0.55 7.23 -25.92 -0.19 0.36 16 21 C -0.12 0.08 8.54 -39.46 -0.34 -0.26 16 22 C -0.03 -0.03 6.85 -79.95 -0.55 -0.58 16 23 N 0.03 0.12 4.45 33.96 0.15 0.27 16 24 O -0.17 -0.77 18.44 -29.46 -0.54 -1.32 16 25 O -0.13 -0.66 14.64 -35.91 -0.53 -1.19 16 26 C -0.04 0.02 5.26 -104.61 -0.55 -0.53 16 27 C -0.07 0.03 1.74 36.01 0.06 0.09 16 28 O -0.52 -0.05 11.83 -55.28 -0.65 -0.70 16 29 Si 0.67 -1.66 29.91 -169.99 -5.08 -6.74 16 30 C -0.18 0.42 7.65 -39.46 -0.30 0.12 16 31 H 0.06 -0.37 7.66 -51.93 -0.40 -0.77 16 32 H 0.07 -0.45 7.66 -51.93 -0.40 -0.85 16 33 H 0.11 -0.63 8.14 -51.93 -0.42 -1.06 16 34 H 0.10 -0.53 7.66 -51.93 -0.40 -0.93 16 35 H 0.10 -0.54 7.66 -51.93 -0.40 -0.93 16 36 H 0.41 -2.69 8.73 -40.82 -0.36 -3.05 16 37 H 0.09 -0.29 8.14 -51.93 -0.42 -0.72 16 38 H 0.10 -0.34 8.12 -51.93 -0.42 -0.76 16 39 H 0.17 -0.62 6.69 -52.48 -0.35 -0.97 16 40 H 0.15 -0.22 8.06 -52.49 -0.42 -0.64 16 41 H 0.18 -0.20 8.06 -52.49 -0.42 -0.62 16 42 H 0.10 -0.43 6.32 -51.93 -0.33 -0.76 16 43 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 44 H 0.17 -0.45 5.85 -52.49 -0.31 -0.75 16 45 H 0.14 0.18 6.04 -51.93 -0.31 -0.13 16 46 H 0.37 -1.67 8.70 45.56 0.40 -1.27 16 47 H -0.25 0.12 7.11 56.52 0.40 0.52 16 48 H -0.24 -0.23 7.11 56.52 0.40 0.18 16 49 H 0.16 -0.87 3.36 -52.49 -0.18 -1.05 16 LS Contribution 415.70 15.07 6.26 6.26 Total: 0.00 -14.56 415.70 -10.04 -24.60 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -5.57 Total: -16.60 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.94 Total: -2.80 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: 0.05 Total: 1.68 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -2.75 Total: -6.40 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.08 Total: -6.74 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -14.56 -10.04 -24.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567756_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.828 kcal (2) G-P(sol) polarization free energy of solvation -14.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds