Wall clock time and date at job start Sun Mar 7 2021 10:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99915 * 2 1 4 4 C 1.39150 * 120.07552 * 179.97438 * 3 2 1 5 5 O 1.36001 * 120.07311 * 0.04094 * 4 3 2 6 6 C 1.42890 * 117.00645 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47569 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99942 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00463 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00528 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.84862 * 23.80791 * 10 9 7 12 12 C 1.53782 * 113.61611 * 154.99826 * 10 9 7 13 13 C 1.53781 * 87.08103 * 139.98110 * 12 10 9 14 14 H 1.09001 * 113.61161 * 89.11582 * 13 12 10 15 15 N 1.46497 * 113.61648 * 219.93587 * 13 12 10 16 16 C 1.34940 * 126.03785 * 85.00239 * 15 13 12 17 17 C 1.35319 * 107.74787 * 179.97438 * 16 15 13 18 18 C 1.39871 * 107.92012 * 359.97438 * 17 16 15 19 19 N 1.30836 * 108.19964 * 359.74029 * 18 17 16 20 20 C 1.53780 * 87.08348 * 334.57079 * 13 12 10 21 21 C 1.38562 * 119.86093 * 180.02562 * 4 3 2 22 22 C 1.38247 * 119.99672 * 359.97438 * 21 4 3 23 23 N 1.47996 * 119.92767 * 180.02562 * 22 21 4 24 24 O 1.21800 * 120.00083 * 0.02562 * 23 22 21 25 25 O 1.21807 * 120.00186 * 180.02562 * 23 22 21 26 26 C 1.38255 * 120.14202 * 359.72841 * 22 21 4 27 27 C 1.50703 * 119.92365 * 180.27417 * 26 22 21 28 28 O 1.42895 * 109.47199 * 75.27893 * 27 26 22 29 29 Si 1.86305 * 109.47136 * 195.27898 * 27 26 22 30 30 C 1.38238 * 120.15035 * 0.55875 * 26 22 21 31 31 H 1.08998 * 109.47635 * 300.00056 * 1 2 3 32 32 H 1.09004 * 109.46842 * 60.00418 * 1 2 3 33 33 H 1.09004 * 109.47192 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47338 * 300.00459 * 6 5 4 35 35 H 1.09004 * 109.47528 * 59.99488 * 6 5 4 36 36 H 0.97004 * 119.99729 * 0.02562 * 9 7 6 37 37 H 1.09004 * 113.61627 * 254.53423 * 12 10 9 38 38 H 1.09004 * 113.61392 * 25.43827 * 12 10 9 39 39 H 1.08004 * 126.12782 * 359.97438 * 16 15 13 40 40 H 1.08000 * 126.04012 * 180.02562 * 17 16 15 41 41 H 1.07996 * 125.90029 * 180.02562 * 18 17 16 42 42 H 1.08997 * 113.61301 * 270.88295 * 20 13 12 43 43 H 1.09001 * 113.61753 * 139.97847 * 20 13 12 44 44 H 1.08001 * 120.00630 * 179.97438 * 21 4 3 45 45 H 1.08999 * 109.47267 * 315.27661 * 27 26 22 46 46 H 0.96708 * 113.99772 * 59.99976 * 28 27 26 47 47 H 1.48503 * 109.99789 * 58.68237 * 29 27 26 48 48 H 1.48495 * 109.99870 * 180.02562 * 29 27 26 49 49 H 1.08002 * 120.00519 * 179.72186 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1796 0.1477 0.0002 6 6 5.6002 0.3006 0.0014 7 6 6.2518 -1.0582 0.0002 8 8 5.5669 -2.0591 -0.0019 9 7 7.5956 -1.1613 0.0005 10 6 8.2291 -2.4822 -0.0001 11 1 7.5835 -3.2610 -0.4062 12 6 9.6470 -2.4852 -0.5953 13 6 10.0319 -3.4615 0.5288 14 1 9.8796 -4.5090 0.2684 15 7 11.3553 -3.2044 1.1020 16 6 11.6372 -2.3247 2.0856 17 6 12.9672 -2.3878 2.3267 18 6 13.5169 -3.3391 1.4612 19 7 12.5506 -3.8336 0.7306 20 6 8.8772 -2.8553 1.3437 21 6 4.0603 2.5233 0.0011 22 6 3.3029 3.6798 0.0005 23 7 3.9714 5.0002 0.0005 24 8 5.1876 5.0671 0.0005 25 8 3.3054 6.0201 0.0005 26 6 1.9224 3.6056 -0.0062 27 6 1.1016 4.8695 -0.0130 28 8 1.1358 5.4527 -1.3171 29 14 -0.6600 4.4685 0.4419 30 6 1.2932 2.3748 -0.0008 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 5.9072 0.8511 -0.8879 35 1 5.9059 0.8498 0.8920 36 1 8.1434 -0.3607 0.0018 37 1 9.7014 -2.9233 -1.5919 38 1 10.1510 -1.5210 -0.5276 39 1 10.9283 -1.6848 2.5900 40 1 13.5085 -1.8068 3.0588 41 1 14.5582 -3.6206 1.4085 42 1 9.1706 -1.9923 1.9413 43 1 8.3100 -3.5921 1.9123 44 1 5.1386 2.5840 0.0019 45 1 1.5125 5.5735 0.7107 46 1 0.7845 4.8805 -2.0131 47 1 -0.7059 3.8323 1.7830 48 1 -1.4799 5.7066 0.4382 49 1 0.2146 2.3196 -0.0015 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567756_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:38:14 Heat of formation + Delta-G solvation = 20.811626 kcal Electronic energy + Delta-G solvation = -37793.871359 eV Core-core repulsion = 32503.132706 eV Total energy + Delta-G solvation = -5290.738653 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.151 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.40423 -42.35208 -42.09893 -41.16487 -39.99183 -39.28419 -38.98812 -37.73528 -37.13347 -35.01175 -32.69144 -32.61508 -32.16098 -30.97073 -29.85693 -28.75533 -27.91790 -26.98885 -26.09489 -25.52501 -23.90471 -23.22837 -22.46263 -22.14669 -21.66320 -20.77424 -20.45747 -19.83951 -19.50738 -18.80408 -18.68381 -18.65537 -18.24447 -17.75538 -17.68891 -17.33845 -16.90380 -16.77096 -16.56855 -16.37358 -16.08958 -15.68228 -15.65217 -15.54611 -15.22835 -15.00917 -14.78306 -14.39786 -14.21116 -14.05336 -13.90161 -13.88778 -13.57805 -13.48630 -13.31921 -13.02940 -12.73857 -12.67365 -12.49955 -12.43606 -12.34821 -12.31979 -12.27717 -12.21662 -12.01117 -11.78182 -11.58938 -11.10632 -10.53539 -10.46133 -10.39358 -10.27722 -9.52765 -9.49148 -5.13831 -1.36949 -0.43528 0.15909 0.30375 0.93926 1.12524 1.17277 1.33746 1.56732 1.59062 1.89462 1.89932 1.93125 1.93732 2.35371 2.97888 3.03850 3.17546 3.26999 3.28995 3.44546 3.49175 3.54533 3.56604 3.69325 3.87910 3.93219 3.93982 3.95465 4.03298 4.05788 4.11438 4.22577 4.38058 4.39522 4.41226 4.41805 4.48965 4.54991 4.67050 4.73242 4.74780 4.81992 4.82424 4.86144 4.97228 5.14253 5.24759 5.31254 5.58183 5.73229 6.05770 6.13506 6.33401 6.45985 6.71019 6.75971 7.02187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.307 6.307 3 C 0.172 3.828 4 C 0.101 3.899 5 O -0.290 6.290 6 C 0.025 3.975 7 C 0.521 3.479 8 O -0.562 6.562 9 N -0.697 5.697 10 C 0.134 3.866 11 H 0.112 0.888 12 C -0.140 4.140 13 C 0.130 3.870 14 H 0.122 0.878 15 N -0.366 5.366 16 C 0.054 3.946 17 C -0.289 4.289 18 C 0.032 3.968 19 N -0.342 5.342 20 C -0.147 4.147 21 C -0.109 4.109 22 C -0.046 4.046 23 N 0.036 4.964 24 O -0.185 6.185 25 O -0.168 6.168 26 C -0.040 4.040 27 C -0.092 4.092 28 O -0.537 6.537 29 Si 0.786 3.214 30 C -0.163 4.163 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.164 0.836 41 H 0.198 0.802 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.184 0.816 45 H 0.115 0.885 46 H 0.393 0.607 47 H -0.271 1.271 48 H -0.291 1.291 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -1.890 0.020 4.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.218 6.218 3 C 0.123 3.877 4 C 0.054 3.946 5 O -0.202 6.202 6 C -0.053 4.053 7 C 0.307 3.693 8 O -0.439 6.439 9 N -0.351 5.351 10 C 0.028 3.972 11 H 0.130 0.870 12 C -0.179 4.179 13 C 0.027 3.973 14 H 0.140 0.860 15 N -0.148 5.148 16 C -0.092 4.092 17 C -0.318 4.318 18 C -0.153 4.153 19 N -0.163 5.163 20 C -0.186 4.186 21 C -0.129 4.129 22 C -0.131 4.131 23 N 0.548 4.452 24 O -0.396 6.396 25 O -0.381 6.381 26 C -0.042 4.042 27 C -0.200 4.200 28 O -0.343 6.343 29 Si 0.688 3.312 30 C -0.182 4.182 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.261 0.739 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.220 0.780 40 H 0.181 0.819 41 H 0.215 0.785 42 H 0.133 0.867 43 H 0.107 0.893 44 H 0.201 0.799 45 H 0.132 0.868 46 H 0.242 0.758 47 H -0.197 1.197 48 H -0.218 1.218 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.457 -3.873 -0.096 6.693 hybrid contribution 1.677 1.713 0.883 2.554 sum -3.781 -2.160 0.786 4.425 Atomic orbital electron populations 1.23814 0.74695 1.07086 1.04176 1.86331 1.24841 1.24474 1.86164 1.18674 0.89185 0.86370 0.93511 1.17942 0.88791 0.85093 1.02789 1.86299 1.18451 1.26743 1.88733 1.22928 0.78847 0.96118 1.07377 1.20302 0.83015 0.90403 0.75608 1.90795 1.63862 1.39699 1.49537 1.45563 1.05195 1.09747 1.74628 1.22110 0.92614 0.86070 0.96387 0.86965 1.23808 0.94109 1.00714 0.99306 1.22749 0.76841 1.01461 0.96214 0.86040 1.48820 1.06666 1.30301 1.29052 1.23009 0.98126 0.95563 0.92469 1.21888 0.94388 1.07507 1.07992 1.24368 0.99893 0.96327 0.94679 1.77336 0.91489 1.22017 1.25507 1.23943 0.94222 1.02565 0.97905 1.20906 1.03012 0.88121 1.00866 1.20562 0.92766 0.81912 1.17845 1.43730 1.00826 1.03463 0.97139 1.94499 0.96521 1.94129 1.54444 1.94580 1.64402 1.25453 1.53703 1.20220 0.91084 0.97650 0.95260 1.25771 1.10613 0.92884 0.90721 1.86670 1.87131 1.44669 1.15879 0.94405 0.71762 0.82232 0.82779 1.21085 1.01782 0.88110 1.07202 0.90195 0.88857 0.86059 0.85396 0.85324 0.73901 0.89187 0.87659 0.77997 0.81892 0.78544 0.86678 0.89295 0.79895 0.86780 0.75797 1.19722 1.21835 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.51 10.28 -79.54 -0.82 -0.31 16 3 C 0.17 -0.41 6.70 22.57 0.15 -0.26 16 4 C 0.10 -0.10 6.70 22.57 0.15 0.05 16 5 O -0.29 -0.34 9.45 -67.14 -0.63 -0.97 16 6 C 0.02 -0.17 5.22 71.23 0.37 0.20 16 7 C 0.52 -1.00 7.91 87.65 0.69 -0.31 16 8 O -0.56 -5.14 16.10 16.00 0.26 -4.88 16 9 N -0.70 6.01 5.35 -440.04 -2.36 3.65 16 10 C 0.13 -0.88 4.24 45.52 0.19 -0.69 16 11 H 0.11 -0.29 7.46 -2.38 -0.02 -0.31 16 12 C -0.14 0.98 7.63 31.12 0.24 1.22 16 13 C 0.13 -0.48 5.03 45.52 0.23 -0.25 16 14 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 15 N -0.37 -0.53 3.81 -325.00 -1.24 -1.77 16 16 C 0.05 -0.10 10.69 83.54 0.89 0.79 16 17 C -0.29 -0.11 10.80 21.99 0.24 0.13 16 18 C 0.03 0.12 12.03 85.24 1.03 1.15 16 19 N -0.34 -2.56 12.58 -57.02 -0.72 -3.28 16 20 C -0.15 1.09 7.23 31.12 0.22 1.32 16 21 C -0.11 0.22 8.54 22.35 0.19 0.41 16 22 C -0.05 -0.11 6.85 36.39 0.25 0.14 16 23 N 0.04 0.31 4.45 -46.46 -0.21 0.10 16 24 O -0.18 -1.79 18.44 18.89 0.35 -1.44 16 25 O -0.17 -2.06 14.64 25.04 0.37 -1.70 16 26 C -0.04 0.06 5.26 -19.86 -0.10 -0.05 16 27 C -0.09 0.05 1.74 71.24 0.12 0.17 16 28 O -0.54 -0.35 11.83 -129.82 -1.54 -1.89 16 29 Si 0.79 -4.59 29.91 68.60 2.05 -2.54 16 30 C -0.16 1.02 7.65 22.35 0.17 1.19 16 31 H 0.08 -1.12 7.66 -2.39 -0.02 -1.13 16 32 H 0.09 -1.50 7.66 -2.38 -0.02 -1.52 16 33 H 0.12 -1.51 8.14 -2.38 -0.02 -1.53 16 34 H 0.13 -1.60 7.66 -2.38 -0.02 -1.61 16 35 H 0.13 -1.65 7.66 -2.39 -0.02 -1.66 16 36 H 0.42 -6.47 8.73 -92.71 -0.81 -7.28 16 37 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.11 -0.88 8.12 -2.38 -0.02 -0.90 16 39 H 0.20 -1.96 6.69 -2.91 -0.02 -1.98 16 40 H 0.16 -0.60 8.06 -2.91 -0.02 -0.63 16 41 H 0.20 -0.26 8.06 -2.91 -0.02 -0.29 16 42 H 0.12 -1.24 6.32 -2.39 -0.02 -1.26 16 43 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.18 -1.23 5.85 -2.91 -0.02 -1.24 16 45 H 0.12 0.50 6.04 -2.39 -0.01 0.48 16 46 H 0.39 -3.68 8.70 -74.05 -0.64 -4.32 16 47 H -0.27 0.69 7.11 99.48 0.71 1.40 16 48 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 49 H 0.19 -2.58 3.36 -2.91 -0.01 -2.59 16 Total: 0.00 -37.78 415.70 1.32 -36.46 By element: Atomic # 1 Polarization: -27.46 SS G_CDS: -0.35 Total: -27.81 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.15 Total: 6.38 kcal Atomic # 7 Polarization: 3.22 SS G_CDS: -4.52 Total: -1.30 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -2.02 Total: -11.19 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.05 Total: -2.54 kcal Total: -37.78 1.32 -36.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567756_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.268 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds