Wall clock time and date at job start Sun Mar 7 2021 10:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.46913 * 2 1 4 4 C 1.50696 * 109.47122 * 119.99571 * 2 1 3 5 5 C 1.34244 * 126.50403 * 255.31990 * 4 2 1 6 6 N 1.36832 * 109.93932 * 180.16607 * 5 4 2 7 7 C 1.46495 * 125.06447 * 179.81655 * 6 5 4 8 8 C 1.50701 * 109.46917 * 264.69952 * 7 6 5 9 9 O 1.21276 * 119.99961 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99895 * 180.02562 * 10 8 7 12 12 H 1.09008 * 112.90540 * 336.24622 * 11 10 8 13 13 C 1.53775 * 113.61656 * 107.50207 * 11 10 8 14 14 C 1.53779 * 87.08438 * 139.98199 * 13 11 10 15 15 H 1.09002 * 113.61731 * 89.11293 * 14 13 11 16 16 N 1.46500 * 113.68825 * 220.00754 * 14 13 11 17 17 C 1.34948 * 126.04121 * 13.77888 * 16 14 13 18 18 C 1.35313 * 107.74870 * 179.84046 * 17 16 14 19 19 C 1.39872 * 107.91990 * 0.41922 * 18 17 16 20 20 N 1.30840 * 108.20152 * 359.74151 * 19 18 17 21 21 C 1.53777 * 113.61534 * 204.99945 * 11 10 8 22 22 C 1.37694 * 109.87599 * 359.55134 * 6 5 4 23 23 C 1.39078 * 133.51764 * 180.24284 * 22 6 5 24 24 C 1.37790 * 119.77872 * 180.02562 * 23 22 6 25 25 C 1.38786 * 120.66897 * 359.97438 * 24 23 22 26 26 C 1.36661 * 120.52589 * 0.02562 * 25 24 23 27 27 C 1.39587 * 119.76381 * 359.97438 * 26 25 24 28 28 H 0.96699 * 114.00198 * 300.00134 * 1 2 3 29 29 H 1.08989 * 109.47587 * 239.99827 * 2 1 3 30 30 H 1.48497 * 110.00005 * 178.67957 * 3 2 1 31 31 H 1.48498 * 110.00238 * 299.99603 * 3 2 1 32 32 H 1.07993 * 125.02896 * 0.02562 * 5 4 2 33 33 H 1.08995 * 109.47525 * 144.69427 * 7 6 5 34 34 H 1.09002 * 109.47323 * 24.69810 * 7 6 5 35 35 H 0.97002 * 120.00021 * 359.97438 * 10 8 7 36 36 H 1.08993 * 113.61636 * 25.42563 * 13 11 10 37 37 H 1.09008 * 113.61006 * 254.52805 * 13 11 10 38 38 H 1.08000 * 126.12316 * 359.97438 * 17 16 14 39 39 H 1.07997 * 126.04317 * 180.15988 * 18 17 16 40 40 H 1.08000 * 125.90002 * 179.71549 * 19 18 17 41 41 H 1.08997 * 113.61941 * 105.46412 * 21 11 10 42 42 H 1.09005 * 113.61136 * 334.56577 * 21 11 10 43 43 H 1.07999 * 120.11214 * 0.04716 * 23 22 6 44 44 H 1.08006 * 119.66709 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.73585 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.11762 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.4553 -0.1371 2.3255 6 7 2.8027 -1.0988 3.2347 7 6 3.4073 -0.8402 4.5438 8 6 4.9056 -0.9624 4.4380 9 8 5.4179 -1.2388 3.3740 10 7 5.6763 -0.7655 5.5261 11 6 7.1329 -0.8838 5.4231 12 1 7.4498 -1.5096 4.5887 13 6 7.8671 0.4654 5.4950 14 6 8.9229 -0.2444 6.3589 15 1 9.7292 -0.6953 5.7804 16 7 9.4099 0.5665 7.4777 17 6 8.8456 1.7016 7.9403 18 6 9.5931 2.1400 8.9796 19 6 10.6559 1.2473 9.1521 20 7 10.5472 0.3036 8.2523 21 6 7.8177 -1.2382 6.7536 22 6 2.4939 -2.3455 2.7386 23 6 2.6292 -3.6360 3.2393 24 6 2.2159 -4.7106 2.4823 25 6 1.6643 -4.5192 1.2232 26 6 1.5220 -3.2599 0.7118 27 6 1.9340 -2.1569 1.4615 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8898 30 1 3.5345 1.7703 0.0322 31 1 1.5615 2.4679 -1.2085 32 1 2.5857 0.9256 2.4668 33 1 3.0337 -1.5656 5.2664 34 1 3.1472 0.1663 4.8718 35 1 5.2665 -0.5448 6.3771 36 1 7.3123 1.2365 6.0293 37 1 8.2483 0.8069 4.5326 38 1 7.9555 2.1742 7.5521 39 1 9.4049 3.0253 9.5688 40 1 11.4325 1.3239 9.8988 41 1 8.1589 -2.2720 6.8074 42 1 7.2493 -0.9328 7.6321 43 1 3.0565 -3.7953 4.2182 44 1 2.3222 -5.7120 2.8727 45 1 1.3458 -5.3723 0.6426 46 1 1.0915 -3.1186 -0.2685 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567756_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:39:13 Heat of formation + Delta-G solvation = 119.669481 kcal Electronic energy + Delta-G solvation = -30102.268943 eV Core-core repulsion = 25962.319716 eV Total energy + Delta-G solvation = -4139.949227 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.55159 -42.30031 -40.94909 -39.34603 -38.09052 -37.57816 -34.96987 -34.01692 -32.22407 -31.37430 -30.94570 -30.23150 -28.98663 -26.99361 -26.29192 -25.29494 -23.76521 -22.88918 -22.31548 -22.03959 -21.60456 -20.70520 -20.37260 -18.77218 -18.52306 -18.35561 -17.68543 -17.23437 -16.86770 -16.47738 -16.42228 -16.23498 -15.99954 -15.64653 -15.49941 -15.33930 -15.08197 -14.86713 -14.70465 -14.47655 -14.16430 -14.06784 -13.97528 -13.72564 -13.59356 -13.34639 -13.11042 -12.74387 -12.70960 -12.59167 -12.34225 -12.25646 -12.12033 -12.01632 -11.82177 -11.58804 -11.15441 -10.55583 -10.39480 -10.30454 -10.22371 -9.52433 -9.15935 -8.62363 -5.05210 0.13931 0.62377 0.94607 1.33709 1.38043 1.42392 1.56580 1.65914 1.76474 1.93609 2.00943 2.24630 2.93979 3.04429 3.28993 3.50814 3.58922 3.66600 3.68176 3.71223 3.76033 3.89254 3.93432 4.03305 4.05636 4.18822 4.21378 4.29727 4.37894 4.41707 4.48323 4.48601 4.55830 4.66023 4.71529 4.74712 4.78459 4.81490 4.86384 4.88441 4.98894 5.12915 5.14796 5.36183 5.49765 5.65257 5.72496 5.73272 5.75015 6.14200 6.19995 6.23231 6.46032 6.76328 6.89872 7.11545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.042 4.042 3 Si 0.805 3.195 4 C -0.227 4.227 5 C 0.082 3.918 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.494 3.506 9 O -0.572 6.572 10 N -0.698 5.698 11 C 0.134 3.866 12 H 0.102 0.898 13 C -0.144 4.144 14 C 0.129 3.871 15 H 0.116 0.884 16 N -0.367 5.367 17 C 0.056 3.944 18 C -0.288 4.288 19 C 0.032 3.968 20 N -0.345 5.345 21 C -0.139 4.139 22 C 0.091 3.909 23 C -0.132 4.132 24 C -0.110 4.110 25 C -0.154 4.154 26 C -0.092 4.092 27 C -0.118 4.118 28 H 0.394 0.606 29 H 0.086 0.914 30 H -0.293 1.293 31 H -0.300 1.300 32 H 0.211 0.789 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.423 0.577 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.207 0.793 39 H 0.165 0.835 40 H 0.197 0.803 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 5.227 8.931 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.152 4.152 3 Si 0.710 3.290 4 C -0.234 4.234 5 C -0.043 4.043 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.280 3.720 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.027 3.973 12 H 0.120 0.880 13 C -0.183 4.183 14 C 0.026 3.974 15 H 0.134 0.866 16 N -0.149 5.149 17 C -0.090 4.090 18 C -0.317 4.317 19 C -0.154 4.154 20 N -0.167 5.167 21 C -0.178 4.178 22 C -0.014 4.014 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.173 4.173 26 C -0.111 4.111 27 C -0.122 4.122 28 H 0.243 0.757 29 H 0.104 0.896 30 H -0.221 1.221 31 H -0.228 1.228 32 H 0.227 0.773 33 H 0.162 0.838 34 H 0.189 0.811 35 H 0.262 0.738 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.223 0.777 39 H 0.183 0.817 40 H 0.214 0.786 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.152 0.848 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.090 4.218 6.945 8.390 hybrid contribution 0.112 -0.230 0.064 0.264 sum -1.978 3.988 7.010 8.304 Atomic orbital electron populations 1.86454 1.17790 1.82397 1.50227 1.24593 0.84698 1.10497 0.95386 0.94143 0.76602 0.73317 0.84927 1.20792 1.12149 0.91842 0.98641 1.22085 0.98594 0.95382 0.88257 1.43441 1.51864 1.03674 1.15873 1.22036 0.88260 1.09539 0.83850 1.21549 0.90741 0.75885 0.83872 1.90821 1.75790 1.48273 1.30067 1.45672 1.05785 1.71094 1.12543 1.21988 0.79774 0.97011 0.98496 0.88009 1.23922 0.95339 0.98573 1.00497 1.22731 0.95871 0.93291 0.85498 0.86627 1.48816 1.19891 1.20123 1.26044 1.23040 1.00790 0.88796 0.96370 1.21893 0.99532 1.05787 1.04481 1.24378 1.00147 0.92749 0.98077 1.77345 1.04855 1.25606 1.08881 1.23792 0.95587 1.00513 0.97922 1.18372 1.01533 0.87147 0.94385 1.20250 1.04506 0.89101 1.01421 1.21124 0.98338 0.99092 0.94334 1.20902 1.02425 0.96963 0.97051 1.20439 0.99353 0.91890 0.99382 1.19377 1.03965 0.93945 0.94901 0.75672 0.89620 1.22089 1.22815 0.77295 0.83820 0.81073 0.73790 0.86212 0.89836 0.77686 0.81743 0.78618 0.89689 0.87323 0.84762 0.83786 0.84809 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.01 12.88 -148.98 -1.92 -3.93 16 2 C -0.04 -0.15 3.06 71.23 0.22 0.07 16 3 Si 0.80 -1.14 30.76 68.60 2.11 0.97 16 4 C -0.23 -1.05 5.57 -18.62 -0.10 -1.15 16 5 C 0.08 -0.11 9.89 83.00 0.82 0.71 16 6 N -0.47 0.34 2.27 -520.01 -1.18 -0.84 16 7 C 0.09 -0.92 6.48 85.63 0.56 -0.37 16 8 C 0.49 -2.18 7.90 87.66 0.69 -1.48 16 9 O -0.57 -4.67 16.02 -3.02 -0.05 -4.71 16 10 N -0.70 7.54 5.35 -440.04 -2.36 5.19 16 11 C 0.13 -0.95 4.24 45.51 0.19 -0.76 16 12 H 0.10 -0.16 7.47 -2.38 -0.02 -0.17 16 13 C -0.14 1.17 7.24 31.12 0.23 1.40 16 14 C 0.13 -0.50 5.03 45.52 0.23 -0.27 16 15 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 16 N -0.37 -0.29 3.81 -324.99 -1.24 -1.53 16 17 C 0.06 -0.18 10.70 83.54 0.89 0.71 16 18 C -0.29 0.24 10.80 21.99 0.24 0.48 16 19 C 0.03 0.10 12.03 85.24 1.03 1.12 16 20 N -0.35 -2.47 12.58 -57.02 -0.72 -3.18 16 21 C -0.14 1.05 7.63 31.12 0.24 1.28 16 22 C 0.09 0.55 6.80 39.03 0.27 0.81 16 23 C -0.13 -0.58 10.00 22.37 0.22 -0.36 16 24 C -0.11 -0.52 10.01 22.29 0.22 -0.30 16 25 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 26 C -0.09 -0.91 10.05 22.23 0.22 -0.69 16 27 C -0.12 -1.11 6.35 -20.20 -0.13 -1.24 16 28 H 0.39 -2.27 8.70 -74.06 -0.64 -2.92 16 29 H 0.09 0.64 7.96 -2.39 -0.02 0.62 16 30 H -0.29 -1.41 7.11 99.48 0.71 -0.70 16 31 H -0.30 -1.81 7.11 99.48 0.71 -1.11 16 32 H 0.21 -2.23 6.35 -2.91 -0.02 -2.25 16 33 H 0.14 -2.18 8.14 -2.39 -0.02 -2.20 16 34 H 0.17 -3.40 8.12 -2.39 -0.02 -3.42 16 35 H 0.42 -7.73 8.73 -92.71 -0.81 -8.54 16 36 H 0.12 -1.51 6.33 -2.39 -0.02 -1.52 16 37 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 38 H 0.21 -2.41 6.70 -2.91 -0.02 -2.43 16 39 H 0.17 -0.85 8.06 -2.91 -0.02 -0.87 16 40 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 41 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.11 -1.06 8.12 -2.38 -0.02 -1.08 16 43 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 44 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 45 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 Total: 0.00 -36.43 391.01 0.52 -35.91 By element: Atomic # 1 Polarization: -26.62 SS G_CDS: -0.39 Total: -27.01 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.25 Total: -0.88 kcal Atomic # 7 Polarization: 5.13 SS G_CDS: -5.49 Total: -0.36 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -1.97 Total: -8.64 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.11 Total: 0.97 kcal Total: -36.43 0.52 -35.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567756_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.581 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds