Wall clock time and date at job start Sun Mar 7 2021 06:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86306 * 109.47105 * 2 1 4 4 C 1.50697 * 109.46856 * 240.00424 * 2 1 3 5 5 C 1.38709 * 120.02724 * 284.99852 * 4 2 1 6 6 O 1.35900 * 120.05786 * 0.04279 * 5 4 2 7 7 C 1.42894 * 117.00366 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47579 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99341 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00405 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99941 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46818 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.84960 * 316.19192 * 12 11 10 14 14 C 1.53782 * 113.61643 * 87.50204 * 12 11 10 15 15 C 1.53784 * 87.08258 * 139.97774 * 14 12 11 16 16 H 1.09002 * 113.68947 * 89.12378 * 15 14 12 17 17 N 1.46494 * 113.61289 * 220.01731 * 15 14 12 18 18 C 1.34947 * 126.04046 * 12.50267 * 17 15 14 19 19 C 1.35315 * 107.74392 * 179.97438 * 18 17 15 20 20 C 1.39864 * 107.92313 * 359.97438 * 19 18 17 21 21 N 1.30837 * 108.20153 * 359.74203 * 20 19 18 22 22 C 1.53781 * 113.61130 * 184.99839 * 12 11 10 23 23 C 1.38759 * 119.88974 * 180.02562 * 5 4 2 24 24 C 1.38120 * 119.94381 * 0.02562 * 23 5 4 25 25 C 1.38285 * 120.05710 * 0.02562 * 24 23 5 26 26 C 1.38171 * 120.03194 * 105.04373 * 4 2 1 27 27 H 0.96710 * 114.00029 * 59.99559 * 1 2 3 28 28 H 1.08991 * 109.47103 * 120.00103 * 2 1 3 29 29 H 1.48498 * 109.99955 * 298.68535 * 3 2 1 30 30 H 1.48505 * 109.99779 * 60.00109 * 3 2 1 31 31 H 1.09001 * 109.47530 * 300.00843 * 7 6 5 32 32 H 1.08998 * 109.46987 * 60.00416 * 7 6 5 33 33 H 0.97002 * 119.99581 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46561 * 299.99486 * 11 10 8 35 35 H 1.08998 * 109.47326 * 59.99486 * 11 10 8 36 36 H 1.08997 * 113.61347 * 254.53007 * 14 12 11 37 37 H 1.09002 * 113.61444 * 25.43020 * 14 12 11 38 38 H 1.07999 * 126.12579 * 359.95223 * 18 17 15 39 39 H 1.08006 * 126.03586 * 179.97438 * 19 18 17 40 40 H 1.08008 * 125.89550 * 179.97438 * 20 19 18 41 41 H 1.09004 * 113.61890 * 334.56599 * 22 12 11 42 42 H 1.09003 * 113.61646 * 105.38522 * 22 12 11 43 43 H 1.08001 * 120.02961 * 179.97438 * 23 5 4 44 44 H 1.07997 * 119.97310 * 179.97438 * 24 23 5 45 45 H 1.08000 * 119.95126 * 179.70618 * 25 24 23 46 46 H 1.08005 * 119.97031 * 359.97395 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.8696 -2.0939 -1.3071 6 8 1.3555 -2.8106 -0.2732 7 6 1.3228 -4.2314 -0.4215 8 6 0.7241 -4.8520 0.8144 9 8 0.3606 -4.1468 1.7317 10 7 0.5925 -6.1906 0.9003 11 6 0.0099 -6.7937 2.1016 12 6 -0.0249 -8.3151 1.9427 13 1 -0.3675 -8.6300 0.9570 14 6 1.2676 -9.0119 2.3995 15 6 0.3713 -10.1066 3.0022 16 1 0.1375 -10.9131 2.3072 17 7 0.8347 -10.5937 4.3038 18 6 1.7813 -10.0195 5.0753 19 6 1.9165 -10.7726 6.1913 20 6 1.0215 -11.8435 6.0989 21 7 0.3683 -11.7340 4.9706 22 6 -0.7315 -9.0393 3.1008 23 6 2.3333 -2.7451 -2.4412 24 6 2.8556 -2.0145 -3.4906 25 6 2.9169 -0.6352 -3.4115 26 6 2.4545 0.0160 -2.2831 27 1 -0.3934 0.4418 -0.7651 28 1 1.7923 -0.5138 0.8899 29 1 1.5878 2.4586 -1.2242 30 1 1.5615 2.4679 1.2086 31 1 0.7165 -4.4924 -1.2889 32 1 2.3370 -4.6055 -0.5614 33 1 0.8829 -6.7545 0.1664 34 1 0.6154 -6.5324 2.9694 35 1 -1.0045 -6.4199 2.2404 36 1 1.8897 -9.3615 1.5756 37 1 1.8282 -8.4473 3.1445 38 1 2.3325 -9.1201 4.8434 39 1 2.5956 -10.5808 7.0089 40 1 0.8896 -12.6237 6.8340 41 1 -0.7174 -8.4822 4.0376 42 1 -1.7238 -9.4098 2.8436 43 1 2.2868 -3.8223 -2.5031 44 1 3.2170 -2.5208 -4.3734 45 1 3.3300 -0.0660 -4.2310 46 1 2.5030 1.0933 -2.2238 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567758_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:59:14 Heat of formation + Delta-G solvation = 41.232454 kcal Electronic energy + Delta-G solvation = -28638.815422 eV Core-core repulsion = 24498.660911 eV Total energy + Delta-G solvation = -4140.154512 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29950 -41.60307 -40.74223 -39.77519 -38.50926 -37.60807 -35.78158 -32.85301 -32.65522 -31.35127 -30.99757 -30.11727 -27.95547 -26.90090 -26.68634 -24.61170 -23.42483 -22.61423 -22.22053 -21.79254 -21.49579 -20.19246 -19.50929 -18.76949 -18.16894 -17.85439 -17.52381 -17.14734 -16.90784 -16.83579 -16.39433 -16.07309 -15.75899 -15.64710 -15.51262 -15.30657 -15.02729 -14.89779 -14.71421 -14.33869 -14.18883 -13.87979 -13.72607 -13.45602 -13.42336 -13.26420 -13.04465 -12.96741 -12.53221 -12.29492 -12.10741 -11.89126 -11.84808 -11.68629 -11.64552 -11.54063 -11.01875 -10.53710 -10.38053 -10.24085 -9.96329 -9.53010 -9.20228 -4.96019 0.24912 0.43483 0.93248 1.28558 1.42733 1.46900 1.53714 1.62139 1.91246 1.93124 2.59266 2.71473 3.15730 3.29551 3.45314 3.49943 3.60371 3.65815 3.73482 3.86689 3.91112 3.99110 4.02530 4.06570 4.13598 4.15525 4.27159 4.33414 4.38516 4.48721 4.54928 4.58082 4.65901 4.67956 4.69935 4.75109 4.85317 4.88498 4.95118 4.99316 5.12370 5.18676 5.29811 5.35309 5.39141 5.54768 5.72977 5.77401 6.14508 6.28489 6.46452 6.52393 6.75040 7.11308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.082 4.082 3 Si 0.782 3.218 4 C -0.165 4.165 5 C 0.129 3.871 6 O -0.314 6.314 7 C 0.036 3.964 8 C 0.510 3.490 9 O -0.574 6.574 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.098 4.098 13 H 0.132 0.868 14 C -0.128 4.128 15 C 0.124 3.876 16 H 0.127 0.873 17 N -0.367 5.367 18 C 0.052 3.948 19 C -0.291 4.291 20 C 0.031 3.969 21 N -0.342 5.342 22 C -0.139 4.139 23 C -0.211 4.211 24 C -0.074 4.074 25 C -0.155 4.155 26 C -0.089 4.089 27 H 0.381 0.619 28 H 0.096 0.904 29 H -0.265 1.265 30 H -0.308 1.308 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.423 0.577 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.199 0.801 39 H 0.162 0.838 40 H 0.198 0.802 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -2.316 -8.230 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.190 4.190 3 Si 0.686 3.314 4 C -0.166 4.166 5 C 0.084 3.916 6 O -0.227 6.227 7 C -0.041 4.041 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.361 5.361 11 C 0.011 3.989 12 C -0.117 4.117 13 H 0.150 0.850 14 C -0.166 4.166 15 C 0.023 3.977 16 H 0.144 0.856 17 N -0.149 5.149 18 C -0.094 4.094 19 C -0.320 4.320 20 C -0.154 4.154 21 N -0.164 5.164 22 C -0.178 4.178 23 C -0.229 4.229 24 C -0.092 4.092 25 C -0.173 4.173 26 C -0.106 4.106 27 H 0.230 0.770 28 H 0.115 0.885 29 H -0.191 1.191 30 H -0.237 1.237 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.216 0.784 39 H 0.180 0.820 40 H 0.215 0.785 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.174 0.826 44 H 0.172 0.828 45 H 0.167 0.833 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.856 -1.741 -7.723 9.288 hybrid contribution -0.707 -0.359 0.266 0.836 sum 4.149 -2.100 -7.457 8.789 Atomic orbital electron populations 1.86653 1.19012 1.80336 1.49687 1.25198 0.83228 1.12340 0.98214 0.94066 0.89859 0.70973 0.76529 1.19701 1.06794 0.91520 0.98560 1.19063 0.94092 0.91062 0.87384 1.86188 1.77971 1.18789 1.39726 1.22716 1.04604 0.79875 0.96947 1.20565 0.78461 0.83059 0.88285 1.90791 1.50252 1.62664 1.41515 1.45614 1.63669 1.05429 1.21352 1.21285 0.98399 0.91982 0.87260 1.22511 0.96762 0.91767 1.00634 0.84984 1.23559 0.96833 0.94525 1.01723 1.23169 0.97698 0.96112 0.80768 0.85561 1.48976 1.29767 1.19343 1.16843 1.22974 0.93849 1.00458 0.92126 1.21883 1.08310 0.99361 1.02470 1.24353 0.95158 1.00110 0.95741 1.77299 1.24341 1.05011 1.09746 1.23437 0.99062 0.96092 0.99246 1.21598 1.05518 1.01873 0.93941 1.21401 0.95441 0.94152 0.98238 1.21401 1.02039 0.95169 0.98670 1.21187 0.96507 1.00473 0.92465 0.77025 0.88545 1.19142 1.23719 0.86221 0.85561 0.73890 0.91997 0.92396 0.87379 0.88485 0.78409 0.82024 0.78489 0.90236 0.89672 0.82621 0.82844 0.83286 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.72 12.88 -148.98 -1.92 -7.63 16 2 C -0.08 -0.52 2.38 71.23 0.17 -0.35 16 3 Si 0.78 1.03 30.25 68.60 2.07 3.11 16 4 C -0.16 -0.63 5.27 -19.77 -0.10 -0.73 16 5 C 0.13 0.48 6.66 22.51 0.15 0.63 16 6 O -0.31 -2.20 9.00 -73.39 -0.66 -2.86 16 7 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 8 C 0.51 1.23 7.91 87.66 0.69 1.92 16 9 O -0.57 -8.82 16.50 16.00 0.26 -8.56 16 10 N -0.71 4.52 5.56 -463.06 -2.57 1.95 16 11 C 0.13 -0.61 5.51 86.38 0.48 -0.13 16 12 C -0.10 0.98 3.75 -10.27 -0.04 0.94 16 13 H 0.13 -1.88 8.14 -2.39 -0.02 -1.90 16 14 C -0.13 1.28 6.98 31.12 0.22 1.50 16 15 C 0.12 -0.48 5.04 45.52 0.23 -0.25 16 16 H 0.13 -0.58 8.14 -2.39 -0.02 -0.60 16 17 N -0.37 -1.14 3.81 -324.99 -1.24 -2.38 16 18 C 0.05 0.04 10.69 83.54 0.89 0.93 16 19 C -0.29 -0.78 10.80 21.99 0.24 -0.54 16 20 C 0.03 0.17 12.03 85.23 1.02 1.19 16 21 N -0.34 -3.06 12.58 -57.02 -0.72 -3.78 16 22 C -0.14 0.67 7.44 31.12 0.23 0.90 16 23 C -0.21 0.59 9.04 22.37 0.20 0.79 16 24 C -0.07 0.33 10.04 22.25 0.22 0.56 16 25 C -0.15 0.52 10.04 22.28 0.22 0.74 16 26 C -0.09 0.06 8.66 22.26 0.19 0.25 16 27 H 0.38 1.12 8.70 -74.05 -0.64 0.48 16 28 H 0.10 0.92 7.83 -2.39 -0.02 0.90 16 29 H -0.27 -0.53 6.69 99.48 0.67 0.13 16 30 H -0.31 -3.00 7.11 99.48 0.71 -2.29 16 31 H 0.12 -1.07 7.66 -2.39 -0.02 -1.08 16 32 H 0.13 -1.28 7.66 -2.39 -0.02 -1.30 16 33 H 0.42 -6.23 8.47 -92.71 -0.79 -7.01 16 34 H 0.06 -0.10 7.85 -2.38 -0.02 -0.12 16 35 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.11 -1.45 8.14 -2.39 -0.02 -1.47 16 37 H 0.10 -0.93 6.07 -2.39 -0.01 -0.94 16 38 H 0.20 -1.22 6.69 -2.91 -0.02 -1.24 16 39 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 41 H 0.08 -0.12 8.10 -2.38 -0.02 -0.14 16 42 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 44 H 0.15 -1.50 8.06 -2.91 -0.02 -1.53 16 45 H 0.15 -1.17 8.06 -2.91 -0.02 -1.19 16 46 H 0.15 -0.52 4.86 -2.91 -0.01 -0.54 16 Total: 0.00 -33.74 384.94 0.22 -33.53 By element: Atomic # 1 Polarization: -21.58 SS G_CDS: -0.41 Total: -21.99 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.39 Total: 8.62 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -4.53 Total: -4.21 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -2.32 Total: -19.06 kcal Atomic # 14 Polarization: 1.03 SS G_CDS: 2.07 Total: 3.11 kcal Total: -33.74 0.22 -33.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567758_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.758 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds