Wall clock time and date at job start Sun Mar 7 2021 06:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47118 * 2 1 4 4 C 1.50694 * 109.47110 * 239.99599 * 2 1 3 5 5 C 1.38271 * 119.94806 * 300.00368 * 4 2 1 6 6 C 1.38142 * 120.05533 * 179.97438 * 5 4 2 7 7 C 1.38730 * 119.95001 * 0.02562 * 6 5 4 8 8 O 1.35890 * 120.06092 * 180.02562 * 7 6 5 9 9 C 1.42903 * 117.00716 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47775 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00137 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00111 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47262 * 180.02562 * 13 12 10 15 15 H 1.08991 * 112.85038 * 43.79970 * 14 13 12 16 16 C 1.53777 * 113.61257 * 175.00414 * 14 13 12 17 17 C 1.53779 * 87.08093 * 139.97957 * 16 14 13 18 18 H 1.09004 * 113.61640 * 89.19640 * 17 16 14 19 19 N 1.46504 * 113.61466 * 220.01394 * 17 16 14 20 20 C 1.34951 * 126.03463 * 85.02543 * 19 17 16 21 21 C 1.35320 * 107.74569 * 180.02562 * 20 19 17 22 22 C 1.39866 * 107.91898 * 359.97438 * 21 20 19 23 23 N 1.30844 * 108.20609 * 0.02562 * 22 21 20 24 24 C 1.53781 * 87.08095 * 334.56154 * 17 16 14 25 25 C 1.38736 * 119.88206 * 0.27320 * 7 6 5 26 26 C 1.38145 * 119.94592 * 359.47503 * 25 7 6 27 27 H 0.96702 * 114.00532 * 300.00419 * 1 2 3 28 28 H 1.08997 * 109.46587 * 120.00200 * 2 1 3 29 29 H 1.48500 * 110.00074 * 299.99541 * 3 2 1 30 30 H 1.48500 * 110.00136 * 61.31798 * 3 2 1 31 31 H 1.07998 * 119.97167 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.02214 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46667 * 59.99194 * 9 8 7 34 34 H 1.08999 * 109.46610 * 300.00175 * 9 8 7 35 35 H 0.97003 * 120.00321 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.47242 * 60.00441 * 13 12 10 37 37 H 1.08999 * 109.47444 * 299.99922 * 13 12 10 38 38 H 1.08992 * 113.61910 * 25.43015 * 16 14 13 39 39 H 1.09000 * 113.68636 * 254.53558 * 16 14 13 40 40 H 1.08004 * 126.12633 * 0.04038 * 20 19 17 41 41 H 1.07993 * 126.03961 * 179.97438 * 21 20 19 42 42 H 1.08004 * 125.89969 * 180.02562 * 22 21 20 43 43 H 1.09005 * 113.61016 * 139.97906 * 24 17 16 44 44 H 1.08995 * 113.61665 * 270.88597 * 24 17 16 45 45 H 1.08000 * 120.02330 * 179.72023 * 25 7 6 46 46 H 1.08005 * 119.96940 * 180.27414 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5965 -2.0343 -1.4481 6 6 2.0553 -2.6876 -2.5755 7 6 2.8531 -2.0146 -3.4894 8 8 3.3052 -2.6549 -4.5995 9 6 4.1214 -1.8996 -5.4971 10 6 4.5259 -2.7683 -6.6601 11 8 4.1524 -3.9209 -6.7147 12 7 5.3034 -2.2647 -7.6389 13 6 5.6971 -3.1093 -8.7693 14 6 6.5719 -2.3010 -9.7297 15 1 7.3212 -1.6995 -9.2152 16 6 7.1406 -3.1316 -10.8922 17 6 6.8594 -1.9178 -11.7935 18 1 7.6878 -1.2111 -11.8453 19 7 6.3339 -2.2759 -13.1133 20 6 5.0395 -2.5077 -13.4162 21 6 4.9716 -2.8077 -14.7340 22 6 6.2689 -2.7570 -15.2543 23 7 7.0865 -2.4386 -14.2836 24 6 5.7698 -1.5197 -10.7839 25 6 3.1926 -0.6882 -3.2656 26 6 2.7270 -0.0378 -2.1393 27 1 -0.3934 0.4417 0.7650 28 1 1.7922 -0.5139 0.8900 29 1 1.5615 2.4678 -1.2085 30 1 1.5878 2.4585 1.2242 31 1 0.9752 -2.5577 -0.7365 32 1 1.7932 -3.7214 -2.7452 33 1 5.0134 -1.5546 -4.9741 34 1 3.5596 -1.0402 -5.8631 35 1 5.6024 -1.3429 -7.5950 36 1 4.8055 -3.4547 -9.2928 37 1 6.2588 -3.9685 -8.4027 38 1 6.5395 -4.0068 -11.1385 39 1 8.2009 -3.3619 -10.7882 40 1 4.2068 -2.4616 -12.7299 41 1 4.0743 -3.0444 -15.2864 42 1 6.5477 -2.9478 -16.2801 43 1 5.7237 -0.4478 -10.5913 44 1 4.7940 -1.9543 -11.0006 45 1 3.8172 -0.1634 -3.9733 46 1 2.9875 0.9961 -1.9669 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567758_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:59:18 Heat of formation + Delta-G solvation = 39.692448 kcal Electronic energy + Delta-G solvation = -27940.904992 eV Core-core repulsion = 23800.683701 eV Total energy + Delta-G solvation = -4140.221291 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28625 -41.53271 -40.69300 -39.77478 -38.88834 -37.31892 -35.75641 -32.78969 -32.39568 -31.80942 -31.01168 -30.32988 -28.04520 -26.88209 -26.14324 -24.58960 -23.86473 -22.28385 -22.18768 -21.77664 -21.47437 -20.17899 -19.45494 -18.77303 -18.52404 -17.89604 -17.47487 -17.33504 -16.88320 -16.75378 -16.54424 -15.93196 -15.71942 -15.60883 -15.43649 -15.31167 -14.94909 -14.71949 -14.45966 -14.35113 -14.08234 -13.97074 -13.86507 -13.51976 -13.41046 -13.39796 -13.24645 -12.94919 -12.47814 -12.28537 -12.14999 -11.89927 -11.84008 -11.74236 -11.62606 -11.52630 -11.00153 -10.47418 -10.36895 -10.21078 -10.02730 -9.52148 -9.20432 -4.91161 0.27844 0.32093 0.94099 1.33267 1.45291 1.47303 1.62812 1.63221 1.91830 1.97389 2.59275 2.63341 3.17759 3.31794 3.41860 3.52350 3.62516 3.67967 3.81767 3.83986 3.88041 3.99486 4.03310 4.06767 4.11569 4.16873 4.30042 4.30863 4.42963 4.45912 4.50912 4.60110 4.68360 4.69155 4.71613 4.77521 4.87000 4.90383 4.97281 4.97792 5.13022 5.16881 5.21353 5.25501 5.38093 5.51508 5.69614 5.73736 6.15531 6.27192 6.47830 6.60723 6.75865 7.13619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.086 4.086 3 Si 0.769 3.231 4 C -0.125 4.125 5 C -0.062 4.062 6 C -0.167 4.167 7 C 0.121 3.879 8 O -0.320 6.320 9 C 0.035 3.965 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.705 5.705 13 C 0.134 3.866 14 C -0.097 4.097 15 H 0.134 0.866 16 C -0.139 4.139 17 C 0.123 3.877 18 H 0.127 0.873 19 N -0.367 5.367 20 C 0.052 3.948 21 C -0.292 4.292 22 C 0.031 3.969 23 N -0.342 5.342 24 C -0.129 4.129 25 C -0.198 4.198 26 C -0.078 4.078 27 H 0.394 0.606 28 H 0.092 0.908 29 H -0.295 1.295 30 H -0.290 1.290 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.424 0.576 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.199 0.801 41 H 0.162 0.838 42 H 0.198 0.802 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.169 0.831 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 7.047 2.816 8.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.675 3.325 4 C -0.125 4.125 5 C -0.080 4.080 6 C -0.186 4.186 7 C 0.075 3.925 8 O -0.233 6.233 9 C -0.043 4.043 10 C 0.297 3.703 11 O -0.455 6.455 12 N -0.360 5.360 13 C 0.010 3.990 14 C -0.116 4.116 15 H 0.151 0.849 16 C -0.178 4.178 17 C 0.021 3.979 18 H 0.144 0.856 19 N -0.149 5.149 20 C -0.094 4.094 21 C -0.321 4.321 22 C -0.154 4.154 23 N -0.164 5.164 24 C -0.168 4.168 25 C -0.216 4.216 26 C -0.095 4.095 27 H 0.244 0.756 28 H 0.109 0.891 29 H -0.223 1.223 30 H -0.218 1.218 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.216 0.784 41 H 0.179 0.821 42 H 0.215 0.785 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.186 0.814 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.477 6.803 2.602 8.549 hybrid contribution -2.014 -0.315 0.002 2.039 sum 2.463 6.488 2.603 7.412 Atomic orbital electron populations 1.86549 1.18855 1.80702 1.50981 1.25042 0.83841 1.12081 0.98448 0.94227 0.90138 0.71765 0.76412 1.19459 1.01091 0.94563 0.97407 1.20910 0.96942 0.94159 0.96032 1.20617 1.01579 1.01351 0.95033 1.19179 0.94714 0.91995 0.86564 1.86124 1.65228 1.40341 1.31646 1.22782 0.97839 0.94216 0.89439 1.20553 0.78294 0.87485 0.83926 1.90777 1.55747 1.20418 1.78577 1.45614 1.51490 1.16978 1.21920 1.21293 0.98153 0.93417 0.86124 1.22511 0.98297 0.97474 0.93306 0.84852 1.23432 1.03035 0.97047 0.94272 1.23193 0.99933 0.99027 0.75709 0.85572 1.48987 1.04991 1.52811 1.08091 1.22971 0.88603 0.99937 0.97904 1.21880 0.99103 1.16001 0.95100 1.24345 0.92235 0.99044 0.99743 1.77300 1.21559 1.24937 0.92569 1.23568 0.97468 1.03324 0.92414 1.21489 1.05819 0.93273 1.01052 1.21027 0.95889 0.99950 0.92656 0.75601 0.89063 1.22262 1.21790 0.84906 0.85460 0.85212 0.85653 0.73800 0.92087 0.92096 0.90228 0.89602 0.78430 0.82085 0.78527 0.87456 0.88561 0.81382 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.29 12.74 -148.98 -1.90 -3.19 16 2 C -0.09 0.08 2.81 71.23 0.20 0.28 16 3 Si 0.77 -2.75 29.78 68.60 2.04 -0.71 16 4 C -0.12 -0.24 5.42 -19.85 -0.11 -0.35 16 5 C -0.06 -0.26 9.60 22.25 0.21 -0.04 16 6 C -0.17 -0.93 9.99 22.36 0.22 -0.71 16 7 C 0.12 0.42 6.69 22.51 0.15 0.57 16 8 O -0.32 -1.67 9.67 -73.27 -0.71 -2.38 16 9 C 0.03 -0.18 5.22 71.23 0.37 0.20 16 10 C 0.51 0.21 7.91 87.66 0.69 0.90 16 11 O -0.58 -7.54 16.50 16.01 0.26 -7.27 16 12 N -0.71 5.68 5.56 -463.07 -2.57 3.11 16 13 C 0.13 -0.80 5.51 86.38 0.48 -0.32 16 14 C -0.10 1.08 3.76 -10.27 -0.04 1.04 16 15 H 0.13 -2.06 8.14 -2.39 -0.02 -2.08 16 16 C -0.14 0.80 7.44 31.12 0.23 1.03 16 17 C 0.12 -0.54 5.04 45.52 0.23 -0.31 16 18 H 0.13 -0.65 8.14 -2.38 -0.02 -0.67 16 19 N -0.37 -0.99 3.81 -324.97 -1.24 -2.23 16 20 C 0.05 0.02 10.69 83.54 0.89 0.92 16 21 C -0.29 -0.73 10.80 21.99 0.24 -0.49 16 22 C 0.03 0.16 12.03 85.23 1.02 1.19 16 23 N -0.34 -2.94 12.58 -57.02 -0.72 -3.66 16 24 C -0.13 1.37 6.98 31.12 0.22 1.59 16 25 C -0.20 0.48 9.04 22.37 0.20 0.68 16 26 C -0.08 0.12 8.66 22.25 0.19 0.31 16 27 H 0.39 -2.25 8.74 -74.06 -0.65 -2.89 16 28 H 0.09 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H -0.30 -0.89 7.11 99.48 0.71 -0.18 16 30 H -0.29 -0.33 7.11 99.48 0.71 0.38 16 31 H 0.13 0.37 8.06 -2.91 -0.02 0.34 16 32 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.13 -1.57 7.65 -2.38 -0.02 -1.59 16 34 H 0.13 -1.43 7.67 -2.39 -0.02 -1.45 16 35 H 0.42 -6.92 8.47 -92.71 -0.79 -7.70 16 36 H 0.06 -0.17 7.84 -2.38 -0.02 -0.19 16 37 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.08 -0.20 8.10 -2.39 -0.02 -0.21 16 39 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.20 -1.27 6.69 -2.91 -0.02 -1.29 16 41 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.20 -0.02 8.06 -2.91 -0.02 -0.05 16 43 H 0.11 -1.48 8.14 -2.38 -0.02 -1.50 16 44 H 0.10 -0.96 6.07 -2.39 -0.01 -0.98 16 45 H 0.17 -1.79 6.30 -2.91 -0.02 -1.81 16 46 H 0.15 -1.00 4.87 -2.91 -0.01 -1.01 16 Total: 0.00 -33.57 385.74 0.21 -33.35 By element: Atomic # 1 Polarization: -23.13 SS G_CDS: -0.37 Total: -23.50 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.41 Total: 6.48 kcal Atomic # 7 Polarization: 1.75 SS G_CDS: -4.53 Total: -2.78 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -2.34 Total: -12.84 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.04 Total: -0.71 kcal Total: -33.57 0.21 -33.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567758_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.043 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds