Wall clock time and date at job start Sun Mar 7 2021 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47167 * 2 1 4 4 C 1.50691 * 109.47527 * 120.00589 * 2 1 3 5 5 C 1.38265 * 119.94756 * 64.99837 * 4 2 1 6 6 C 1.38146 * 120.05555 * 180.02562 * 5 4 2 7 7 C 1.38730 * 119.94786 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05738 * 180.02562 * 7 6 5 9 9 C 1.42895 * 116.99858 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47036 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99735 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 H 1.09006 * 112.84599 * 314.66312 * 15 14 13 17 17 C 1.53784 * 113.61503 * 85.85766 * 15 14 13 18 18 C 1.53958 * 87.01341 * 139.95188 * 17 15 14 19 19 H 1.09006 * 113.61163 * 89.20194 * 18 17 15 20 20 N 1.46504 * 113.66503 * 220.06497 * 18 17 15 21 21 C 1.34951 * 126.03487 * 12.28079 * 20 18 17 22 22 C 1.35314 * 107.73897 * 179.83995 * 21 20 18 23 23 C 1.39860 * 107.92412 * 0.42117 * 22 21 20 24 24 N 1.30831 * 108.20498 * 359.73989 * 23 22 21 25 25 C 1.53773 * 113.61550 * 183.47105 * 15 14 13 26 26 C 1.38732 * 119.88742 * 0.27349 * 7 6 5 27 27 C 1.38148 * 119.94147 * 359.47463 * 26 7 6 28 28 H 0.96702 * 113.99655 * 299.99356 * 1 2 3 29 29 H 1.09002 * 109.46695 * 240.00729 * 2 1 3 30 30 H 1.48499 * 109.99745 * 178.68530 * 3 2 1 31 31 H 1.48500 * 109.99936 * 300.00353 * 3 2 1 32 32 H 1.08001 * 119.96989 * 0.02562 * 5 4 2 33 33 H 1.08005 * 120.02441 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47626 * 59.99849 * 9 8 7 35 35 H 1.09001 * 109.47255 * 299.99590 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99477 * 10 9 8 37 37 H 1.08993 * 109.46955 * 59.99914 * 10 9 8 38 38 H 0.96998 * 119.99962 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.47135 * 299.99021 * 14 13 11 40 40 H 1.08993 * 109.47378 * 60.00104 * 14 13 11 41 41 H 1.08997 * 113.61313 * 254.52625 * 17 15 14 42 42 H 1.08999 * 113.61227 * 25.43948 * 17 15 14 43 43 H 1.07998 * 126.12811 * 0.02562 * 21 20 18 44 44 H 1.08006 * 126.03234 * 180.16277 * 22 21 20 45 45 H 1.08005 * 125.90051 * 179.76160 * 23 22 21 46 46 H 1.09000 * 113.61456 * 334.56410 * 25 15 14 47 47 H 1.09000 * 113.61704 * 105.38458 * 25 15 14 48 48 H 1.07994 * 120.02770 * 179.72733 * 26 7 6 49 49 H 1.08002 * 119.97243 * 180.27134 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6841 -2.0606 1.3970 6 6 2.1432 -2.7140 2.5243 7 6 2.8533 -2.0146 3.4892 8 8 3.3064 -2.6553 4.5988 9 6 4.0305 -1.8723 5.5498 10 6 4.4558 -2.7587 6.7222 11 6 5.2189 -1.9328 7.7254 12 8 5.4048 -0.7516 7.5226 13 7 5.6956 -2.5070 8.8477 14 6 6.4380 -1.7041 9.8227 15 6 6.8631 -2.5905 10.9952 16 1 6.0601 -3.2367 11.3501 17 6 8.1902 -3.3305 10.7584 18 6 8.5283 -3.0283 12.2297 19 1 8.1823 -3.7946 12.9235 20 7 9.9281 -2.6547 12.4467 21 6 10.8232 -2.3384 11.4876 22 6 11.9967 -2.0516 12.0972 23 6 11.8151 -2.2070 13.4752 24 7 10.5756 -2.5685 13.6860 25 6 7.5791 -1.8235 12.1193 26 6 3.0957 -0.6589 3.3221 27 6 2.6390 -0.0111 2.1906 28 1 -0.3933 0.4416 0.7651 29 1 1.7922 -0.5137 -0.8901 30 1 3.5346 1.7702 0.0320 31 1 1.5614 2.4679 -1.2085 32 1 1.1316 -2.6047 0.6453 33 1 1.9501 -3.7687 2.6538 34 1 3.3948 -1.0662 5.9162 35 1 4.9154 -1.4495 5.0739 36 1 3.5707 -3.1811 7.1980 37 1 5.0913 -3.5649 6.3562 38 1 5.5473 -3.4517 9.0098 39 1 7.3229 -1.2815 9.3469 40 1 5.8022 -0.8981 10.1890 41 1 8.0663 -4.3926 10.5473 42 1 8.8482 -2.8304 10.0477 43 1 10.6356 -2.3152 10.4243 44 1 12.9130 -1.7589 11.6060 45 1 12.5681 -2.0546 14.2344 46 1 8.0696 -0.9107 11.7814 47 1 6.9620 -1.6695 13.0046 48 1 3.6444 -0.1113 4.0739 49 1 2.8312 1.0433 2.0579 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567758_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:59:23 Heat of formation + Delta-G solvation = 30.070768 kcal Electronic energy + Delta-G solvation = -29583.789675 eV Core-core repulsion = 25287.613537 eV Total energy + Delta-G solvation = -4296.176138 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32953 -41.41129 -40.92251 -39.93749 -39.11967 -37.16300 -35.83153 -33.55850 -32.63818 -32.02831 -31.44130 -30.96656 -29.03979 -27.18209 -26.53433 -25.61868 -24.47400 -23.38294 -22.29942 -22.18399 -21.78717 -21.40113 -20.36281 -19.52907 -18.61336 -18.31849 -17.66171 -17.59674 -17.32292 -17.07188 -16.80058 -16.44283 -16.26829 -15.89711 -15.70017 -15.52542 -15.43348 -15.06516 -14.76439 -14.66812 -14.53823 -14.42060 -14.19966 -14.06988 -13.87726 -13.54660 -13.54050 -13.43359 -13.14109 -12.94403 -12.87180 -12.49618 -12.09665 -12.05499 -12.02922 -11.87602 -11.82251 -11.67996 -11.54280 -11.08672 -10.39452 -10.33133 -10.30907 -10.01547 -9.51043 -9.18138 -5.02110 0.31691 0.33794 0.95320 1.32177 1.43037 1.48946 1.62280 1.65126 1.96992 1.99180 2.36207 2.69105 2.93498 3.05256 3.30650 3.38421 3.43900 3.50727 3.68854 3.72195 3.75253 3.80370 3.83549 3.91555 3.94458 3.96664 4.08812 4.21630 4.27750 4.29254 4.33242 4.37037 4.42583 4.51168 4.51851 4.54000 4.58862 4.60015 4.63496 4.73356 4.74772 4.85163 4.97616 4.99297 5.12287 5.18568 5.20152 5.30734 5.52186 5.72961 5.75056 6.07463 6.21078 6.35080 6.60133 6.80345 6.98237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.062 4.062 3 Si 0.683 3.317 4 C -0.158 4.158 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.137 3.863 8 O -0.316 6.316 9 C 0.073 3.927 10 C -0.141 4.141 11 C 0.520 3.480 12 O -0.537 6.537 13 N -0.728 5.728 14 C 0.131 3.869 15 C -0.120 4.120 16 H 0.108 0.892 17 C -0.141 4.141 18 C 0.137 3.863 19 H 0.124 0.876 20 N -0.364 5.364 21 C 0.052 3.948 22 C -0.273 4.273 23 C 0.045 3.955 24 N -0.297 5.297 25 C -0.136 4.136 26 C -0.203 4.203 27 C -0.074 4.074 28 H 0.379 0.621 29 H 0.112 0.888 30 H -0.258 1.258 31 H -0.255 1.255 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.404 0.596 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.148 0.852 45 H 0.183 0.817 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.134 0.866 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -2.127 2.158 3.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.173 4.173 3 Si 0.585 3.415 4 C -0.159 4.159 5 C -0.071 4.071 6 C -0.169 4.169 7 C 0.092 3.908 8 O -0.230 6.230 9 C -0.002 4.002 10 C -0.181 4.181 11 C 0.306 3.694 12 O -0.414 6.414 13 N -0.381 5.381 14 C 0.008 3.992 15 C -0.139 4.139 16 H 0.126 0.874 17 C -0.179 4.179 18 C 0.035 3.965 19 H 0.141 0.859 20 N -0.146 5.146 21 C -0.094 4.094 22 C -0.303 4.303 23 C -0.141 4.141 24 N -0.118 5.118 25 C -0.175 4.175 26 C -0.221 4.221 27 C -0.092 4.092 28 H 0.226 0.774 29 H 0.129 0.871 30 H -0.183 1.183 31 H -0.180 1.180 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.188 0.812 44 H 0.166 0.834 45 H 0.200 0.800 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.152 0.848 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.901 -1.519 1.966 2.643 hybrid contribution 0.884 -0.719 -0.551 1.266 sum -0.017 -2.238 1.415 2.648 Atomic orbital electron populations 1.86500 1.17213 1.81707 1.49239 1.24953 0.85138 1.09832 0.97401 0.94812 0.81118 0.78319 0.87262 1.20235 1.02658 0.95214 0.97797 1.20834 0.96539 0.93475 0.96271 1.20504 1.01763 1.00824 0.93823 1.18983 0.94150 0.90937 0.86745 1.85973 1.69098 1.38534 1.29395 1.22426 0.96416 0.93321 0.88051 1.21466 1.02237 0.99597 0.94834 1.20301 0.79068 0.87999 0.82041 1.90768 1.57916 1.16090 1.76582 1.45930 1.57162 1.13692 1.21316 1.21339 0.96575 0.93561 0.87733 1.22627 0.97012 0.98406 0.95880 0.87395 1.23601 0.96899 1.02532 0.94879 1.22881 0.76544 0.98689 0.98384 0.85862 1.48711 1.09295 1.52488 1.04075 1.22464 0.90130 1.00789 0.96024 1.21568 0.99532 1.15184 0.93967 1.23951 0.94270 0.99038 0.96858 1.77386 1.07871 1.23582 1.02958 1.23442 0.97252 0.97805 0.98982 1.21270 1.06345 0.93889 1.00620 1.20789 0.96380 0.99013 0.93013 0.77406 0.87052 1.18320 1.17955 0.84940 0.84871 0.90795 0.90904 0.87390 0.87444 0.76147 0.90934 0.90664 0.89415 0.88554 0.81191 0.83438 0.79966 0.88771 0.89500 0.84773 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.32 12.83 -35.23 -0.45 -0.78 16 2 C -0.06 -0.01 2.80 36.00 0.10 0.09 16 3 Si 0.68 -0.35 29.80 -169.99 -5.07 -5.42 16 4 C -0.16 -0.10 5.35 -104.60 -0.56 -0.66 16 5 C -0.05 -0.05 9.68 -39.61 -0.38 -0.43 16 6 C -0.15 -0.17 9.99 -39.43 -0.39 -0.56 16 7 C 0.14 0.21 6.69 -39.22 -0.26 -0.06 16 8 O -0.32 -0.32 10.14 -19.43 -0.20 -0.52 16 9 C 0.07 -0.04 4.03 37.16 0.15 0.11 16 10 C -0.14 0.40 6.07 -27.88 -0.17 0.24 16 11 C 0.52 -0.51 7.83 -10.99 -0.09 -0.59 16 12 O -0.54 -1.75 15.98 5.56 0.09 -1.66 16 13 N -0.73 2.61 5.56 -60.29 -0.33 2.28 16 14 C 0.13 -0.41 5.50 -4.04 -0.02 -0.43 16 15 C -0.12 0.58 3.75 -89.81 -0.34 0.25 16 16 H 0.11 -0.65 8.14 -51.93 -0.42 -1.07 16 17 C -0.14 0.63 6.99 -25.82 -0.18 0.45 16 18 C 0.14 -0.28 5.04 -67.03 -0.34 -0.62 16 19 H 0.12 -0.28 8.14 -51.93 -0.42 -0.70 16 20 N -0.36 -0.40 3.81 -53.98 -0.21 -0.60 16 21 C 0.05 0.01 10.69 -17.22 -0.18 -0.18 16 22 C -0.27 -0.24 10.80 -40.02 -0.43 -0.67 16 23 C 0.04 0.09 12.02 -17.37 -0.21 -0.12 16 24 N -0.30 -1.08 12.58 30.62 0.39 -0.70 16 25 C -0.14 0.41 7.44 -25.93 -0.19 0.21 16 26 C -0.20 -0.16 9.04 -39.43 -0.36 -0.52 16 27 C -0.07 -0.02 8.66 -39.60 -0.34 -0.36 16 28 H 0.38 -1.20 8.70 45.56 0.40 -0.81 16 29 H 0.11 0.06 7.96 -51.93 -0.41 -0.35 16 30 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 31 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 32 H 0.13 0.00 8.06 -52.49 -0.42 -0.42 16 33 H 0.13 -0.01 8.06 -52.48 -0.42 -0.43 16 34 H 0.07 -0.02 7.61 -51.93 -0.39 -0.42 16 35 H 0.07 -0.01 7.63 -51.93 -0.40 -0.41 16 36 H 0.11 -0.46 8.14 -51.93 -0.42 -0.89 16 37 H 0.11 -0.46 8.14 -51.93 -0.42 -0.88 16 38 H 0.40 -2.54 8.47 -40.82 -0.35 -2.89 16 39 H 0.07 -0.15 7.88 -51.93 -0.41 -0.56 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 42 H 0.10 -0.42 6.10 -51.93 -0.32 -0.74 16 43 H 0.17 -0.49 6.69 -52.49 -0.35 -0.85 16 44 H 0.15 -0.14 8.06 -52.48 -0.42 -0.56 16 45 H 0.18 -0.14 8.06 -52.48 -0.42 -0.56 16 46 H 0.09 -0.18 8.10 -51.93 -0.42 -0.60 16 47 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 48 H 0.13 -0.04 6.30 -52.49 -0.33 -0.37 16 49 H 0.13 -0.21 4.90 -52.49 -0.26 -0.47 16 LS Contribution 406.84 15.07 6.13 6.13 Total: 0.00 -10.68 406.84 -10.94 -21.62 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -7.09 Total: -16.48 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.20 Total: -3.87 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -0.16 Total: 0.98 kcal Atomic # 8 Polarization: -2.39 SS G_CDS: -0.56 Total: -2.95 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.07 Total: -5.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -10.68 -10.94 -21.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567758_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.687 kcal (2) G-P(sol) polarization free energy of solvation -10.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds