Wall clock time and date at job start Sun Mar 7 2021 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86293 * 109.47246 * 2 1 4 4 C 1.50693 * 109.46925 * 120.00629 * 2 1 3 5 5 C 1.38250 * 119.96449 * 244.99589 * 4 2 1 6 6 C 1.38295 * 120.10633 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.05914 * 0.02562 * 6 5 4 8 8 C 1.38756 * 119.94173 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.05509 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99730 * 359.97438 * 9 8 7 11 11 C 1.52995 * 109.46880 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47420 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99668 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00231 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00234 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47084 * 179.97438 * 16 15 13 18 18 H 1.09000 * 112.90903 * 43.74420 * 17 16 15 19 19 C 1.53784 * 113.61330 * 174.99792 * 17 16 15 20 20 C 1.53787 * 87.07923 * 139.97966 * 19 17 16 21 21 H 1.09004 * 113.60869 * 89.20131 * 20 19 17 22 22 N 1.46502 * 113.61178 * 220.01667 * 20 19 17 23 23 C 1.34946 * 126.03571 * 84.72162 * 22 20 19 24 24 C 1.35316 * 107.74556 * 179.83396 * 23 22 20 25 25 C 1.39867 * 107.91809 * 0.42466 * 24 23 22 26 26 N 1.30833 * 108.20508 * 359.73781 * 25 24 23 27 27 C 1.53778 * 87.08035 * 334.56830 * 20 19 17 28 28 C 1.38164 * 119.97909 * 65.25274 * 4 2 1 29 29 H 0.96698 * 113.99973 * 59.99648 * 1 2 3 30 30 H 1.09004 * 109.46523 * 240.00438 * 2 1 3 31 31 H 1.48496 * 110.00337 * 60.00229 * 3 2 1 32 32 H 1.48505 * 110.00142 * 181.32202 * 3 2 1 33 33 H 1.07993 * 119.95088 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.96811 * 179.97438 * 6 5 4 35 35 H 1.07995 * 120.02974 * 179.97438 * 7 6 5 36 36 H 1.08994 * 109.47096 * 60.00202 * 10 9 8 37 37 H 1.08998 * 109.47024 * 300.00148 * 10 9 8 38 38 H 1.09007 * 109.47490 * 60.00112 * 11 10 9 39 39 H 1.08998 * 109.47400 * 299.99902 * 11 10 9 40 40 H 1.08993 * 109.47282 * 59.99755 * 12 11 10 41 41 H 1.09007 * 109.47064 * 300.00226 * 12 11 10 42 42 H 0.97005 * 119.99833 * 359.97438 * 15 13 12 43 43 H 1.09004 * 109.47092 * 59.99495 * 16 15 13 44 44 H 1.08995 * 109.46661 * 299.99459 * 16 15 13 45 45 H 1.09004 * 113.61451 * 25.43452 * 19 17 16 46 46 H 1.08994 * 113.61477 * 254.52754 * 19 17 16 47 47 H 1.08007 * 126.12388 * 359.97438 * 23 22 20 48 48 H 1.07996 * 126.03750 * 180.15543 * 24 23 22 49 49 H 1.08001 * 125.89546 * 179.71138 * 25 24 23 50 50 H 1.08999 * 113.61111 * 139.98327 * 27 20 19 51 51 H 1.08999 * 113.61280 * 270.79710 * 27 20 19 52 52 H 1.08001 * 120.02708 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 2.6388 -0.0117 2.1908 6 6 3.1015 -0.6610 3.3208 7 6 2.8583 -2.0097 3.4922 8 6 2.1485 -2.7133 2.5296 9 8 1.9074 -4.0403 2.6961 10 6 2.4147 -4.6475 3.8861 11 6 2.0482 -6.1329 3.8968 12 6 2.5918 -6.7832 5.1706 13 6 2.2313 -8.2464 5.1809 14 8 1.6013 -8.7222 4.2603 15 7 2.6083 -9.0261 6.2136 16 6 2.2574 -10.4484 6.2239 17 6 2.8011 -11.0986 7.4976 18 1 2.6343 -10.4923 8.3879 19 6 2.3821 -12.5687 7.6659 20 6 3.8075 -12.8342 8.1787 21 1 3.9153 -12.7038 9.2556 22 7 4.3787 -14.0948 7.6982 23 6 5.0112 -14.2821 6.5210 24 6 5.3896 -15.5797 6.4579 25 6 4.9656 -16.2092 7.6328 26 7 4.3594 -15.3201 8.3770 27 6 4.2457 -11.6079 7.3609 28 6 1.6891 -2.0607 1.3951 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8901 31 1 1.5617 2.4678 1.2085 32 1 3.5347 1.7702 -0.0322 33 1 2.8311 1.0426 2.0581 34 1 3.6543 -0.1130 4.0695 35 1 3.2203 -2.5164 4.3746 36 1 1.9786 -4.1590 4.7575 37 1 3.4990 -4.5409 3.9146 38 1 2.4846 -6.6211 3.0254 39 1 0.9638 -6.2398 3.8682 40 1 2.1559 -6.2951 6.0423 41 1 3.6762 -6.6762 5.1989 42 1 3.1119 -8.6454 6.9501 43 1 2.6937 -10.9365 5.3523 44 1 1.1731 -10.5552 6.1954 45 1 2.1567 -13.0690 6.7241 46 1 1.6112 -12.7192 8.4215 47 1 5.1861 -13.5302 5.7655 48 1 5.9210 -16.0476 5.6425 49 1 5.1127 -17.2496 7.8823 50 1 4.9791 -10.9828 7.8702 51 1 4.5311 -11.8458 6.3362 52 1 1.1396 -2.6070 0.6427 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567758_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:59:29 Heat of formation + Delta-G solvation = 24.214492 kcal Electronic energy + Delta-G solvation = -31150.269612 eV Core-core repulsion = 26698.301908 eV Total energy + Delta-G solvation = -4451.967704 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.30246 -41.38309 -40.91468 -39.79595 -39.16398 -37.36174 -35.72779 -34.93130 -32.68550 -32.66445 -31.41363 -31.00701 -29.51376 -27.73069 -26.91761 -26.75508 -24.62162 -23.82293 -23.29153 -22.20942 -21.82895 -21.75124 -21.27105 -20.17305 -19.01603 -18.56116 -18.42607 -17.93917 -17.53397 -17.51185 -17.09833 -17.00430 -16.75805 -16.45600 -15.89814 -15.63742 -15.45905 -15.40553 -15.09880 -14.93027 -14.63315 -14.61131 -14.35362 -14.24991 -14.03382 -13.87815 -13.54872 -13.42302 -13.33046 -13.25605 -13.23784 -12.91523 -12.64038 -12.44951 -12.28349 -12.26265 -12.11947 -11.85513 -11.77575 -11.65526 -11.63551 -11.55009 -10.96492 -10.39215 -10.38687 -10.13551 -10.00412 -9.53604 -9.37972 -4.93509 0.08296 0.24615 0.92656 1.27597 1.58024 1.61117 1.65231 1.89078 1.90690 1.97140 2.33575 2.52146 3.16075 3.30253 3.39049 3.53089 3.62202 3.65571 3.72984 3.81047 3.84349 3.85972 3.86323 3.99133 4.01640 4.10873 4.15649 4.16199 4.27457 4.31161 4.33472 4.39644 4.40841 4.49445 4.57276 4.60015 4.63478 4.66842 4.69853 4.77607 4.84682 4.85943 4.88938 4.95023 4.99632 5.08433 5.11755 5.17461 5.21739 5.23975 5.30661 5.44138 5.58804 5.72468 6.13699 6.32995 6.52838 6.74500 6.87769 7.24613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.088 4.088 3 Si 0.786 3.214 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.074 4.074 7 C -0.204 4.204 8 C 0.123 3.877 9 O -0.334 6.334 10 C 0.055 3.945 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.507 3.493 14 O -0.592 6.592 15 N -0.715 5.715 16 C 0.132 3.868 17 C -0.098 4.098 18 H 0.130 0.870 19 C -0.139 4.139 20 C 0.123 3.877 21 H 0.126 0.874 22 N -0.367 5.367 23 C 0.052 3.948 24 C -0.291 4.291 25 C 0.032 3.968 26 N -0.343 5.343 27 C -0.128 4.128 28 C -0.147 4.147 29 H 0.404 0.596 30 H 0.091 0.909 31 H -0.293 1.293 32 H -0.286 1.286 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.420 0.580 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.199 0.801 48 H 0.162 0.838 49 H 0.198 0.802 50 H 0.105 0.895 51 H 0.096 0.904 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 5.143 1.701 6.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.197 4.197 3 Si 0.691 3.309 4 C -0.053 4.053 5 C -0.202 4.202 6 C -0.092 4.092 7 C -0.223 4.223 8 C 0.078 3.922 9 O -0.248 6.248 10 C -0.019 4.019 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.295 3.705 14 O -0.473 6.473 15 N -0.368 5.368 16 C 0.008 3.992 17 C -0.117 4.117 18 H 0.148 0.852 19 C -0.178 4.178 20 C 0.022 3.978 21 H 0.144 0.856 22 N -0.149 5.149 23 C -0.095 4.095 24 C -0.320 4.320 25 C -0.153 4.153 26 N -0.165 5.165 27 C -0.166 4.166 28 C -0.166 4.166 29 H 0.255 0.745 30 H 0.109 0.891 31 H -0.221 1.221 32 H -0.213 1.213 33 H 0.138 0.862 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.258 0.742 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.216 0.784 48 H 0.180 0.820 49 H 0.215 0.785 50 H 0.124 0.876 51 H 0.115 0.885 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.760 5.243 3.064 7.143 hybrid contribution 0.504 -1.060 -0.250 1.200 sum 4.264 4.184 2.814 6.603 Atomic orbital electron populations 1.86452 1.17198 1.82517 1.51348 1.25007 0.85977 1.11806 0.96930 0.94296 0.77274 0.74730 0.84615 1.19491 0.96902 0.93095 0.95771 1.21025 1.03388 0.99477 0.96268 1.21228 0.97132 0.94115 0.96714 1.21588 1.03940 0.95722 1.01020 1.19178 0.95075 0.83256 0.94705 1.86064 1.74727 1.19869 1.44149 1.23051 1.00044 0.93121 0.85686 1.21159 1.01962 0.92329 0.98574 1.21532 1.05386 0.89986 0.99759 1.21169 0.78098 0.89932 0.81315 1.90749 1.41988 1.76704 1.37838 1.45866 1.57654 1.09538 1.23767 1.21229 0.99824 0.80721 0.97406 1.22503 0.95365 0.95181 0.98665 0.85242 1.23436 0.96268 0.95809 1.02289 1.23178 0.94900 0.78729 1.01004 0.85650 1.48972 1.43946 1.08090 1.13871 1.22973 0.96683 0.99166 0.90637 1.21880 1.13312 0.94485 1.02298 1.24347 0.96910 1.00472 0.93563 1.77298 1.25223 0.91386 1.22561 1.23545 0.97828 0.93990 1.01270 1.20385 1.03961 0.94159 0.98110 0.74502 0.89104 1.22108 1.21320 0.86184 0.82705 0.82193 0.89893 0.89617 0.92018 0.92242 0.85434 0.85244 0.74197 0.92307 0.92541 0.90208 0.89718 0.78448 0.82004 0.78480 0.87605 0.88526 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.33 12.81 -148.98 -1.91 -3.24 16 2 C -0.09 -0.16 2.79 71.23 0.20 0.04 16 3 Si 0.79 -1.01 29.85 68.60 2.05 1.04 16 4 C -0.05 -0.39 5.38 -19.88 -0.11 -0.49 16 5 C -0.18 -1.14 8.67 22.29 0.19 -0.95 16 6 C -0.07 -0.20 10.04 22.25 0.22 0.03 16 7 C -0.20 -0.44 9.04 22.37 0.20 -0.24 16 8 C 0.12 0.85 6.69 22.51 0.15 1.00 16 9 O -0.33 -2.21 10.14 -92.48 -0.94 -3.15 16 10 C 0.06 -0.13 4.74 71.98 0.34 0.21 16 11 C -0.10 0.06 4.87 30.59 0.15 0.21 16 12 C -0.13 1.01 5.70 29.85 0.17 1.18 16 13 C 0.51 -0.31 7.83 87.66 0.69 0.38 16 14 O -0.59 -6.56 15.98 -3.03 -0.05 -6.61 16 15 N -0.72 5.11 5.56 -463.07 -2.57 2.54 16 16 C 0.13 -0.65 5.51 86.38 0.48 -0.17 16 17 C -0.10 0.96 3.75 -10.27 -0.04 0.92 16 18 H 0.13 -1.77 8.14 -2.39 -0.02 -1.79 16 19 C -0.14 0.66 7.44 31.12 0.23 0.89 16 20 C 0.12 -0.44 5.04 45.52 0.23 -0.21 16 21 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 22 N -0.37 -1.17 3.81 -324.97 -1.24 -2.41 16 23 C 0.05 0.04 10.69 83.54 0.89 0.93 16 24 C -0.29 -0.76 10.80 21.99 0.24 -0.52 16 25 C 0.03 0.17 12.02 85.24 1.02 1.20 16 26 N -0.34 -3.09 12.58 -57.03 -0.72 -3.80 16 27 C -0.13 1.23 6.98 31.12 0.22 1.45 16 28 C -0.15 -1.31 9.63 22.36 0.22 -1.10 16 29 H 0.40 -3.52 8.74 -74.06 -0.65 -4.17 16 30 H 0.09 -0.16 7.96 -2.38 -0.02 -0.18 16 31 H -0.29 -1.66 7.05 99.48 0.70 -0.96 16 32 H -0.29 -1.05 7.11 99.48 0.71 -0.35 16 33 H 0.12 0.60 4.86 -2.91 -0.01 0.58 16 34 H 0.16 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.16 -0.74 6.30 -2.91 -0.02 -0.76 16 36 H 0.08 -0.50 7.66 -2.39 -0.02 -0.51 16 37 H 0.09 -0.56 7.66 -2.39 -0.02 -0.58 16 38 H 0.06 0.23 8.10 -2.38 -0.02 0.21 16 39 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 40 H 0.13 -1.69 8.14 -2.39 -0.02 -1.71 16 41 H 0.13 -1.78 8.14 -2.38 -0.02 -1.80 16 42 H 0.42 -6.11 8.47 -92.70 -0.79 -6.90 16 43 H 0.06 -0.11 7.85 -2.38 -0.02 -0.13 16 44 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.08 -0.13 8.10 -2.39 -0.02 -0.15 16 46 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.20 -1.21 6.69 -2.91 -0.02 -1.23 16 48 H 0.16 -0.23 8.06 -2.91 -0.02 -0.26 16 49 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 50 H 0.11 -1.35 8.14 -2.39 -0.02 -1.37 16 51 H 0.10 -0.89 6.07 -2.39 -0.01 -0.91 16 52 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 Total: 0.00 -33.86 428.27 -0.13 -34.00 By element: Atomic # 1 Polarization: -22.69 SS G_CDS: -0.45 Total: -23.14 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.69 Total: 4.76 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -4.53 Total: -3.67 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -2.89 Total: -12.99 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.05 Total: 1.04 kcal Total: -33.86 -0.13 -34.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567758_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.212 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds