Wall clock time and date at job start Sun Mar 7 2021 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33811 * 122.45383 * 2 1 4 4 C 1.50703 * 124.52075 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.46948 * 46.27730 * 4 3 2 6 6 Si 1.86297 * 109.47049 * 166.27648 * 4 3 2 7 7 S 1.70621 * 110.95903 * 179.97438 * 3 2 1 8 8 C 1.75835 * 91.55848 * 0.02562 * 7 3 2 9 9 C 1.46583 * 125.45411 * 179.97438 * 8 7 3 10 10 O 1.21703 * 119.99959 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00426 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00283 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47276 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.90965 * 316.25761 * 13 12 11 15 15 C 1.53960 * 113.66433 * 87.55078 * 13 12 11 16 16 C 1.53788 * 87.11026 * 139.89124 * 15 13 12 17 17 H 1.08997 * 113.68800 * 89.20048 * 16 15 13 18 18 N 1.46500 * 113.61216 * 220.09010 * 16 15 13 19 19 C 1.34942 * 126.03961 * 12.49998 * 18 16 15 20 20 C 1.35319 * 107.74380 * 179.97438 * 19 18 16 21 21 C 1.39866 * 107.92115 * 359.97438 * 20 19 18 22 22 N 1.30835 * 108.20154 * 359.74505 * 21 20 19 23 23 C 1.53778 * 113.61569 * 184.99970 * 13 12 11 24 24 C 1.36641 * 109.08604 * 0.23839 * 8 7 3 25 25 H 1.08998 * 109.46900 * 84.17744 * 1 2 3 26 26 H 1.08995 * 109.47194 * 204.18297 * 1 2 3 27 27 H 1.09008 * 109.46429 * 324.17810 * 1 2 3 28 28 H 1.08994 * 109.47060 * 286.27348 * 4 3 2 29 29 H 0.96695 * 114.00312 * 59.99959 * 5 4 3 30 30 H 1.48507 * 110.00142 * 179.97438 * 6 4 3 31 31 H 1.48504 * 110.00351 * 301.31870 * 6 4 3 32 32 H 0.96996 * 119.99769 * 0.02562 * 11 9 8 33 33 H 1.09006 * 109.47000 * 60.00372 * 12 11 9 34 34 H 1.09004 * 109.47162 * 300.00353 * 12 11 9 35 35 H 1.09000 * 113.53716 * 25.34187 * 15 13 12 36 36 H 1.09002 * 113.74485 * 254.46874 * 15 13 12 37 37 H 1.08000 * 126.12948 * 359.95297 * 19 18 16 38 38 H 1.07998 * 126.03617 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.89737 * 180.02562 * 21 20 19 40 40 H 1.08998 * 113.61708 * 105.47458 * 23 13 12 41 41 H 1.08992 * 113.61667 * 334.65366 * 23 13 12 42 42 H 1.08007 * 123.35510 * 179.75639 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1291 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.5919 2.5904 0.9727 6 14 2.9629 3.7551 0.4163 7 16 3.8970 0.7891 0.0007 8 6 3.5936 -0.9429 0.0002 9 6 4.6230 -1.9864 0.0000 10 8 4.3000 -3.1598 -0.0008 11 7 5.9273 -1.6466 0.0006 12 6 6.9560 -2.6895 -0.0002 13 6 8.3411 -2.0397 0.0014 14 1 8.4175 -1.2019 -0.6916 15 6 8.8742 -1.7245 1.4110 16 6 10.2501 -2.1960 0.9114 17 1 10.8505 -1.4020 0.4675 18 7 10.9921 -2.9877 1.8957 19 6 10.4915 -3.5093 3.0352 20 6 11.4935 -4.1680 3.6622 21 6 12.6456 -4.0453 2.8788 22 7 12.3448 -3.3428 1.8168 23 6 9.4951 -3.0486 -0.1221 24 6 2.2446 -1.1601 -0.0058 25 1 -0.3633 0.1043 -1.0224 26 1 -0.3633 -0.9374 0.4210 27 1 -0.3632 0.8334 0.6015 28 1 1.2288 2.7376 -0.9872 29 1 0.8824 2.4043 1.8760 30 1 2.3945 5.1271 0.4185 31 1 3.5477 3.4451 1.7457 32 1 6.1847 -0.7114 0.0016 33 1 6.8456 -3.3081 -0.8909 34 1 6.8451 -3.3100 0.8891 35 1 8.4507 -2.3601 2.1887 36 1 8.8417 -0.6652 1.6658 37 1 9.4736 -3.4172 3.3843 38 1 11.4168 -4.6960 4.6012 39 1 13.6150 -4.4625 3.1085 40 1 9.9635 -3.0579 -1.1062 41 1 9.2427 -4.0466 0.2359 42 1 1.8018 -2.1453 -0.0112 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567758_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:00:43 Heat of formation + Delta-G solvation = 75.590751 kcal Electronic energy + Delta-G solvation = -25182.583560 eV Core-core repulsion = 21451.753374 eV Total energy + Delta-G solvation = -3730.830186 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27736 -41.04749 -40.03859 -39.54341 -37.49505 -35.78963 -32.83031 -32.15902 -30.98106 -30.15569 -29.12631 -26.89042 -26.29943 -24.75612 -23.92658 -22.22528 -21.84554 -21.61434 -20.32272 -20.16219 -19.34320 -18.39792 -17.78825 -17.19390 -17.04599 -16.82236 -16.57945 -16.27966 -15.89571 -15.54611 -15.36128 -15.19116 -14.88227 -14.61311 -14.46996 -14.30509 -13.87285 -13.84284 -13.53443 -13.40569 -13.26135 -13.15966 -13.01898 -12.84960 -12.41641 -12.36407 -12.24136 -11.84362 -11.74992 -11.62692 -11.54710 -11.25229 -10.76334 -10.36143 -10.31944 -9.76093 -9.51193 -9.36738 -5.10504 -0.66834 0.29505 0.68509 0.95141 1.10907 1.29088 1.54780 1.60433 1.89049 1.92824 1.98078 2.06203 3.17840 3.25904 3.31693 3.53741 3.58624 3.66162 3.76780 3.88564 4.04357 4.11608 4.16258 4.29331 4.32448 4.49293 4.50603 4.57595 4.60506 4.68123 4.70596 4.75499 4.82261 4.86644 4.87406 4.90523 4.97662 5.00492 5.13904 5.17544 5.35226 5.39093 5.44206 5.74680 6.16255 6.32459 6.37562 6.76900 7.00839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C -0.239 4.239 4 C -0.039 4.039 5 O -0.531 6.531 6 Si 0.727 3.273 7 S 0.264 5.736 8 C -0.283 4.283 9 C 0.588 3.412 10 O -0.573 6.573 11 N -0.710 5.710 12 C 0.133 3.867 13 C -0.102 4.102 14 H 0.131 0.869 15 C -0.132 4.132 16 C 0.124 3.876 17 H 0.127 0.873 18 N -0.366 5.366 19 C 0.052 3.948 20 C -0.291 4.291 21 C 0.031 3.969 22 N -0.341 5.341 23 C -0.136 4.136 24 C -0.063 4.063 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.389 0.611 30 H -0.274 1.274 31 H -0.260 1.260 32 H 0.413 0.587 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.199 0.801 38 H 0.162 0.838 39 H 0.198 0.802 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 5.522 -0.274 5.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.115 4.115 3 C -0.359 4.359 4 C -0.149 4.149 5 O -0.340 6.340 6 Si 0.628 3.372 7 S 0.533 5.467 8 C -0.403 4.403 9 C 0.375 3.625 10 O -0.455 6.455 11 N -0.362 5.362 12 C 0.010 3.990 13 C -0.121 4.121 14 H 0.149 0.851 15 C -0.170 4.170 16 C 0.023 3.977 17 H 0.145 0.855 18 N -0.148 5.148 19 C -0.094 4.094 20 C -0.320 4.320 21 C -0.154 4.154 22 N -0.163 5.163 23 C -0.175 4.175 24 C -0.097 4.097 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.239 0.761 30 H -0.200 1.200 31 H -0.185 1.185 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.215 0.785 38 H 0.179 0.821 39 H 0.215 0.785 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.992 6.952 -1.424 7.371 hybrid contribution -2.129 -1.686 1.675 3.191 sum -0.138 5.266 0.252 5.274 Atomic orbital electron populations 1.20730 0.88690 1.03809 1.03182 1.18737 0.98666 0.90672 1.03413 1.24574 0.99283 1.00865 1.11141 1.24663 0.98014 0.95003 0.97262 1.86569 1.34859 1.91815 1.20717 0.94645 0.79961 0.77143 0.85437 1.82317 1.01817 0.95540 1.66990 1.24646 0.97575 0.98711 1.19341 1.17180 0.82598 0.86991 0.75689 1.90843 1.82446 1.20171 1.52011 1.45715 1.04453 1.11302 1.74725 1.21371 0.85320 0.89851 1.02460 1.22566 0.91329 0.99831 0.98331 0.85066 1.23616 0.91461 1.04372 0.97548 1.23158 0.91326 0.94039 0.89167 0.85511 1.48973 1.06926 1.41045 1.17900 1.22965 1.01354 0.97003 0.88102 1.21875 0.92907 1.11793 1.05468 1.24347 1.01170 0.97806 0.92070 1.77299 0.94080 1.20873 1.24042 1.23411 0.95406 0.98579 1.00074 1.20771 0.91522 1.00122 0.97270 0.91127 0.91711 0.89078 0.84500 0.76127 1.19978 1.18475 0.74967 0.91525 0.91542 0.88454 0.87581 0.78469 0.82081 0.78510 0.89452 0.90009 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.06 9.74 71.24 0.69 0.75 16 2 C -0.10 -0.05 5.75 -21.05 -0.12 -0.17 16 3 C -0.24 0.68 5.61 24.68 0.14 0.82 16 4 C -0.04 0.18 2.68 71.24 0.19 0.37 16 5 O -0.53 1.33 10.27 -148.98 -1.53 -0.20 16 6 Si 0.73 -4.48 30.97 68.60 2.12 -2.35 16 7 S 0.26 -1.49 19.33 -56.49 -1.09 -2.58 16 8 C -0.28 -0.42 6.45 24.07 0.16 -0.27 16 9 C 0.59 2.51 7.78 86.42 0.67 3.18 16 10 O -0.57 -7.63 16.84 -4.36 -0.07 -7.71 16 11 N -0.71 2.63 5.55 -467.18 -2.59 0.03 16 12 C 0.13 -0.59 5.51 86.38 0.48 -0.11 16 13 C -0.10 0.99 3.76 -10.21 -0.04 0.95 16 14 H 0.13 -1.79 8.14 -2.39 -0.02 -1.81 16 15 C -0.13 1.25 6.99 31.18 0.22 1.47 16 16 C 0.12 -0.50 5.04 45.52 0.23 -0.27 16 17 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 18 N -0.37 -1.04 3.81 -324.98 -1.24 -2.27 16 19 C 0.05 0.03 10.69 83.54 0.89 0.92 16 20 C -0.29 -0.72 10.80 21.99 0.24 -0.48 16 21 C 0.03 0.16 12.03 85.24 1.02 1.18 16 22 N -0.34 -2.93 12.58 -57.03 -0.72 -3.65 16 23 C -0.14 0.73 7.43 31.12 0.23 0.97 16 24 C -0.06 -0.20 9.78 21.72 0.21 0.01 16 25 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.06 -0.05 8.10 -2.39 -0.02 -0.07 16 27 H 0.09 -0.06 5.54 -2.38 -0.01 -0.07 16 28 H 0.14 -0.87 7.96 -2.39 -0.02 -0.89 16 29 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 30 H -0.27 -0.23 7.11 99.48 0.71 0.47 16 31 H -0.26 0.76 7.11 99.48 0.71 1.47 16 32 H 0.41 -4.02 7.59 -92.71 -0.70 -4.72 16 33 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 34 H 0.07 -0.15 7.84 -2.38 -0.02 -0.16 16 35 H 0.10 -0.90 6.07 -2.39 -0.01 -0.91 16 36 H 0.11 -1.32 8.14 -2.39 -0.02 -1.34 16 37 H 0.20 -1.24 6.69 -2.91 -0.02 -1.26 16 38 H 0.16 -0.24 8.06 -2.91 -0.02 -0.27 16 39 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 40 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 42 H 0.14 0.69 8.06 -2.91 -0.02 0.67 16 Total: 0.00 -23.33 363.22 -0.15 -23.48 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: -0.24 Total: -14.07 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.21 Total: 9.32 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -4.55 Total: -5.89 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -1.60 Total: -7.91 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.12 Total: -2.35 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.09 Total: -2.58 kcal Total: -23.33 -0.15 -23.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567758_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.066 kcal (2) G-P(sol) polarization free energy of solvation -23.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds