Wall clock time and date at job start Sun Mar 7 2021 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.46757 * 2 1 4 4 C 1.50702 * 109.46985 * 239.99999 * 2 1 3 5 5 C 1.35454 * 126.06541 * 119.97959 * 4 2 1 6 6 N 1.35532 * 108.86906 * 180.02562 * 5 4 2 7 7 C 1.37650 * 108.64644 * 359.97438 * 6 5 4 8 8 C 1.46671 * 126.23255 * 180.02562 * 7 6 5 9 9 O 1.21705 * 119.99833 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00526 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00440 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47248 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.84286 * 43.80993 * 12 11 10 14 14 C 1.53773 * 113.61391 * 175.00226 * 12 11 10 15 15 C 1.53775 * 87.08063 * 140.06814 * 14 12 11 16 16 H 1.09004 * 113.61582 * 89.20504 * 15 14 12 17 17 N 1.46501 * 113.61654 * 220.01727 * 15 14 12 18 18 C 1.36882 * 126.40212 * 240.21174 * 17 15 14 19 19 C 1.34661 * 106.81949 * 180.25100 * 18 17 15 20 20 N 1.34124 * 108.02302 * 359.74697 * 19 18 17 21 21 C 1.30505 * 109.25474 * 359.97438 * 20 19 18 22 22 C 1.53775 * 113.69075 * 272.54157 * 12 11 10 23 23 C 1.37872 * 107.53292 * 0.26740 * 7 6 5 24 24 H 0.96698 * 114.00011 * 60.00339 * 1 2 3 25 25 H 1.08997 * 109.47032 * 120.00100 * 2 1 3 26 26 H 1.48503 * 110.00148 * 298.67856 * 3 2 1 27 27 H 1.48493 * 110.00384 * 59.99947 * 3 2 1 28 28 H 1.07997 * 125.56266 * 359.97351 * 5 4 2 29 29 H 0.97002 * 125.67452 * 180.02562 * 6 5 4 30 30 H 0.97002 * 119.99378 * 0.02562 * 10 8 7 31 31 H 1.09007 * 109.46729 * 60.00730 * 11 10 8 32 32 H 1.08997 * 109.47296 * 300.00677 * 11 10 8 33 33 H 1.08999 * 113.61452 * 25.51901 * 14 12 11 34 34 H 1.09008 * 113.61640 * 254.61914 * 14 12 11 35 35 H 1.08008 * 126.58741 * 359.97438 * 18 17 15 36 36 H 1.08008 * 125.99229 * 179.75831 * 19 18 17 37 37 H 1.08002 * 125.64815 * 179.97438 * 21 20 19 38 38 H 1.08996 * 113.61719 * 105.46249 * 22 12 11 39 39 H 1.08996 * 113.61937 * 334.55248 * 22 12 11 40 40 H 1.07999 * 126.45788 * 179.70475 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7129 -0.1738 -2.1979 6 7 2.9552 -1.1179 -3.1396 7 6 2.3187 -2.2813 -2.7704 8 6 2.3261 -3.5465 -3.5123 9 8 1.7207 -4.5093 -3.0792 10 7 3.0033 -3.6429 -4.6735 11 6 3.0112 -4.9068 -5.4142 12 6 3.8459 -4.7472 -6.6866 13 1 4.7806 -4.2132 -6.5152 14 6 4.0194 -6.0545 -7.4774 15 6 3.8354 -5.2153 -8.7528 16 1 4.7674 -4.8104 -9.1474 17 7 3.0231 -5.8755 -9.7777 18 6 3.4224 -6.2002 -11.0461 19 6 2.3691 -6.7839 -11.6488 20 7 1.3560 -6.8198 -10.7706 21 6 1.7417 -6.2810 -9.6463 22 6 3.0455 -4.2184 -7.8884 23 6 1.6685 -2.0389 -1.5791 24 1 -0.3933 0.4416 -0.7651 25 1 1.7923 -0.5138 0.8900 26 1 1.5878 2.4586 -1.2243 27 1 1.5614 2.4679 1.2084 28 1 3.0820 0.8410 -2.2162 29 1 3.4890 -0.9946 -3.9401 30 1 3.4862 -2.8756 -5.0185 31 1 1.9897 -5.1774 -5.6819 32 1 3.4432 -5.6902 -4.7916 33 1 3.2194 -6.7756 -7.3100 34 1 5.0128 -6.4935 -7.3831 35 1 4.3941 -6.0187 -11.4814 36 1 2.3444 -7.1578 -12.6618 37 1 1.1349 -6.1723 -8.7595 38 1 3.2526 -3.1750 -8.1258 39 1 1.9792 -4.4375 -7.8334 40 1 1.0704 -2.7429 -1.0196 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:48:13 Heat of formation + Delta-G solvation = 71.411933 kcal Electronic energy + Delta-G solvation = -23451.171784 eV Core-core repulsion = 19849.345993 eV Total energy + Delta-G solvation = -3601.825791 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.10776 -42.46398 -40.63323 -39.66885 -37.80595 -35.89785 -33.54646 -32.56614 -30.98550 -30.34574 -28.91232 -26.87539 -26.43495 -24.86089 -23.53638 -22.50544 -21.91051 -21.25763 -20.80714 -20.38088 -19.76905 -18.48313 -17.57934 -17.24033 -16.87699 -16.68960 -16.39499 -16.08344 -16.00549 -15.59433 -15.23830 -14.97694 -14.83362 -14.72381 -14.46717 -14.41397 -14.19423 -13.84917 -13.62788 -13.46272 -13.39480 -13.13518 -12.45217 -12.17791 -11.86882 -11.80247 -11.65738 -11.31424 -10.96662 -10.51797 -10.49127 -10.32270 -9.93730 -9.47642 -9.28373 -4.84370 0.35969 1.08934 1.38159 1.57995 1.69074 1.82746 1.95784 2.10314 2.15772 2.19172 2.25483 3.25694 3.33164 3.54763 3.60007 3.63966 3.81129 3.83105 3.96838 3.99186 4.10204 4.18755 4.25543 4.38248 4.42865 4.58305 4.62300 4.68277 4.69841 4.74505 4.79585 4.88452 4.92050 4.94255 5.02808 5.15053 5.26456 5.43808 5.58355 5.73057 5.81957 6.27802 6.34701 6.52528 6.62936 7.04983 7.12988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.062 4.062 3 Si 0.792 3.208 4 C -0.226 4.226 5 C 0.062 3.938 6 N -0.513 5.513 7 C -0.069 4.069 8 C 0.586 3.414 9 O -0.579 6.579 10 N -0.711 5.711 11 C 0.130 3.870 12 C -0.100 4.100 13 H 0.133 0.867 14 C -0.136 4.136 15 C 0.104 3.896 16 H 0.149 0.851 17 N -0.445 5.445 18 C -0.046 4.046 19 C -0.067 4.067 20 N -0.544 5.544 21 C 0.172 3.828 22 C -0.138 4.138 23 C -0.107 4.107 24 H 0.384 0.616 25 H 0.108 0.892 26 H -0.269 1.269 27 H -0.316 1.316 28 H 0.216 0.784 29 H 0.438 0.562 30 H 0.414 0.586 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.205 0.795 36 H 0.174 0.826 37 H 0.215 0.785 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 7.601 -2.727 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.696 3.304 4 C -0.232 4.232 5 C -0.077 4.077 6 N -0.111 5.111 7 C -0.182 4.182 8 C 0.374 3.626 9 O -0.459 6.459 10 N -0.363 5.363 11 C 0.007 3.993 12 C -0.119 4.119 13 H 0.151 0.849 14 C -0.175 4.175 15 C 0.002 3.998 16 H 0.167 0.833 17 N -0.126 5.126 18 C -0.180 4.180 19 C -0.214 4.214 20 N -0.263 5.263 21 C -0.110 4.110 22 C -0.176 4.176 23 C -0.134 4.134 24 H 0.233 0.767 25 H 0.126 0.874 26 H -0.195 1.195 27 H -0.244 1.244 28 H 0.232 0.768 29 H 0.280 0.720 30 H 0.250 0.750 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.221 0.779 36 H 0.191 0.809 37 H 0.232 0.768 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.082 7.103 -2.155 12.519 hybrid contribution -0.531 -0.070 -0.633 0.830 sum 9.551 7.032 -2.788 12.184 Atomic orbital electron populations 1.86569 1.19545 1.80530 1.49982 1.24784 0.82550 1.12273 0.97427 0.94336 0.89225 0.70290 0.76589 1.19888 1.07683 0.95092 1.00541 1.22367 1.00347 0.96018 0.88925 1.41828 1.39804 1.08198 1.21238 1.20095 1.09415 0.88202 1.00448 1.17267 0.78524 0.86031 0.80729 1.90867 1.46140 1.39302 1.69564 1.45647 1.52641 1.15819 1.22151 1.21372 1.00250 0.85466 0.92209 1.22551 1.00098 0.98016 0.91253 0.84914 1.23432 1.04364 0.96824 0.92900 1.23414 0.96050 0.94842 0.85539 0.83303 1.45770 1.11626 1.43495 1.11743 1.23230 1.02508 1.06321 0.85918 1.22680 0.90550 1.07138 1.01052 1.70262 1.31952 1.21798 1.02276 1.25129 0.85223 1.01186 0.99494 1.23548 0.99752 1.00400 0.93859 1.21219 1.00294 0.96738 0.95151 0.76701 0.87420 1.19483 1.24435 0.76773 0.72018 0.74955 0.92208 0.91766 0.89980 0.88649 0.77867 0.80890 0.76839 0.88175 0.89774 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.64 12.88 -148.98 -1.92 -4.56 16 2 C -0.06 0.01 3.02 71.24 0.22 0.23 16 3 Si 0.79 -4.11 30.59 68.60 2.10 -2.01 16 4 C -0.23 0.17 5.44 -20.12 -0.11 0.06 16 5 C 0.06 -0.50 10.45 83.48 0.87 0.37 16 6 N -0.51 4.57 5.99 -183.63 -1.10 3.47 16 7 C -0.07 -0.05 7.06 40.35 0.28 0.23 16 8 C 0.59 2.09 7.79 86.45 0.67 2.77 16 9 O -0.58 -8.27 16.88 -4.36 -0.07 -8.34 16 10 N -0.71 4.39 5.55 -467.07 -2.59 1.79 16 11 C 0.13 -0.78 5.51 86.38 0.48 -0.30 16 12 C -0.10 1.30 3.75 -10.27 -0.04 1.26 16 13 H 0.13 -2.34 8.14 -2.38 -0.02 -2.36 16 14 C -0.14 1.38 7.32 31.12 0.23 1.61 16 15 C 0.10 -1.03 4.64 45.52 0.21 -0.82 16 16 H 0.15 -2.14 8.14 -2.38 -0.02 -2.15 16 17 N -0.44 0.83 2.94 -503.80 -1.48 -0.65 16 18 C -0.05 0.01 11.58 83.08 0.96 0.97 16 19 C -0.07 -0.41 11.87 83.52 0.99 0.58 16 20 N -0.54 -5.74 11.25 -200.31 -2.25 -7.99 16 21 C 0.17 0.59 11.37 180.26 2.05 2.64 16 22 C -0.14 1.61 7.19 31.12 0.22 1.84 16 23 C -0.11 -0.56 10.59 22.57 0.24 -0.32 16 24 H 0.38 -0.60 8.70 -74.06 -0.64 -1.25 16 25 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 26 H -0.27 0.97 7.11 99.48 0.71 1.67 16 27 H -0.32 -1.43 7.11 99.48 0.71 -0.73 16 28 H 0.22 -3.46 6.19 -2.91 -0.02 -3.48 16 29 H 0.44 -7.61 8.19 -92.71 -0.76 -8.37 16 30 H 0.41 -5.88 7.60 -92.71 -0.70 -6.59 16 31 H 0.06 -0.14 7.85 -2.38 -0.02 -0.16 16 32 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.08 -0.53 7.86 -2.39 -0.02 -0.55 16 34 H 0.09 -1.08 8.14 -2.38 -0.02 -1.10 16 35 H 0.20 -1.53 8.06 -2.91 -0.02 -1.56 16 36 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 37 H 0.22 -0.34 7.43 -2.91 -0.02 -0.36 16 38 H 0.10 -1.44 8.14 -2.39 -0.02 -1.46 16 39 H 0.08 -0.71 6.68 -2.39 -0.02 -0.73 16 40 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 Total: 0.00 -33.78 341.22 -1.02 -34.80 By element: Atomic # 1 Polarization: -26.66 SS G_CDS: -0.97 Total: -27.64 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 7.28 Total: 11.12 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -7.43 Total: -3.38 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.99 Total: -12.90 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.10 Total: -2.01 kcal Total: -33.78 -1.02 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.213 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds