Wall clock time and date at job start Sun Mar 7 2021 07:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37647 * 125.67991 * 2 1 4 4 C 1.46679 * 126.23047 * 0.03703 * 3 2 1 5 5 O 1.21685 * 120.00427 * 354.47625 * 4 3 2 6 6 N 1.34782 * 119.99843 * 174.47461 * 4 3 2 7 7 C 1.46496 * 120.00077 * 185.08714 * 6 4 3 8 8 C 1.52999 * 109.46980 * 180.02562 * 7 6 4 9 9 H 1.09004 * 112.84745 * 45.33517 * 8 7 6 10 10 C 1.53781 * 113.61631 * 176.53055 * 8 7 6 11 11 C 1.53771 * 87.08218 * 139.98109 * 10 8 7 12 12 H 1.08997 * 113.61767 * 89.11987 * 11 10 8 13 13 N 1.46507 * 113.61543 * 219.93463 * 11 10 8 14 14 C 1.36881 * 126.39769 * 239.71623 * 13 11 10 15 15 C 1.34667 * 106.81655 * 179.83864 * 14 13 11 16 16 N 1.34134 * 108.01858 * 0.42402 * 15 14 13 17 17 C 1.30496 * 109.25782 * 359.73036 * 16 15 14 18 18 C 1.53781 * 113.61714 * 274.13524 * 8 7 6 19 19 C 1.37872 * 107.53452 * 180.02562 * 3 2 1 20 20 C 1.39831 * 107.08356 * 359.97438 * 19 3 2 21 21 C 1.35457 * 107.86963 * 0.02562 * 20 19 3 22 22 C 1.50698 * 125.56892 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.46816 * 210.02243 * 22 21 20 24 24 Si 1.86301 * 109.46811 * 330.01717 * 22 21 20 25 25 H 1.09001 * 109.46940 * 94.55753 * 1 2 3 26 26 H 1.09000 * 109.47236 * 214.56017 * 1 2 3 27 27 H 1.09002 * 109.47077 * 334.56045 * 1 2 3 28 28 H 0.97006 * 119.99760 * 5.08778 * 6 4 3 29 29 H 1.08995 * 109.47571 * 300.00018 * 7 6 4 30 30 H 1.09001 * 109.46819 * 60.00244 * 7 6 4 31 31 H 1.08999 * 113.61365 * 254.53508 * 10 8 7 32 32 H 1.09001 * 113.61091 * 25.43294 * 10 8 7 33 33 H 1.07999 * 126.59025 * 359.97438 * 14 13 11 34 34 H 1.08000 * 125.99408 * 180.18388 * 15 14 13 35 35 H 1.07993 * 125.65126 * 179.97438 * 17 16 15 36 36 H 1.09005 * 113.61275 * 334.57294 * 18 8 7 37 37 H 1.09002 * 113.61372 * 105.47047 * 18 8 7 38 38 H 1.07995 * 126.45541 * 180.02562 * 19 3 2 39 39 H 1.08005 * 126.06778 * 179.73814 * 20 19 3 40 40 H 1.08996 * 109.47026 * 90.01659 * 22 21 20 41 41 H 0.96701 * 113.99610 * 179.97438 * 23 22 21 42 42 H 1.48496 * 110.00126 * 300.00388 * 24 22 21 43 43 H 1.48508 * 109.99879 * 61.32391 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1181 0.0000 4 6 1.8124 2.5124 0.0008 5 8 0.6264 2.7652 -0.1000 6 7 2.7077 3.5137 0.1131 7 6 2.2463 4.8995 0.2260 8 6 3.4544 5.8315 0.3393 9 1 4.2390 5.5967 -0.3800 10 6 3.0805 7.3227 0.3782 11 6 4.1774 7.4891 1.4430 12 1 5.1606 7.7078 1.0266 13 7 3.8059 8.3969 2.5313 14 6 4.4561 9.5478 2.8867 15 6 3.7816 10.0705 3.9285 16 7 2.7531 9.2559 4.2077 17 6 2.7614 8.2513 3.3749 18 6 3.9688 6.0012 1.7785 19 6 3.5780 0.6887 -0.0006 20 6 3.5521 -0.7093 -0.0003 21 6 2.2554 -1.1010 -0.0002 22 6 1.7707 -2.5279 0.0006 23 8 0.5131 -2.6041 -0.6735 24 14 3.0117 -3.6057 -0.8764 25 1 -0.3633 -0.0817 -1.0244 26 1 -0.3634 -0.8463 0.5830 27 1 -0.3633 0.9280 0.4415 28 1 3.6575 3.3166 0.1191 29 1 1.6665 5.1627 -0.6585 30 1 1.6223 5.0034 1.1137 31 1 3.2914 7.8501 -0.5521 32 1 2.0749 7.5110 0.7542 33 1 5.3389 9.9589 2.4198 34 1 4.0279 10.9834 4.4505 35 1 2.0510 7.4381 3.3626 36 1 3.2064 5.8275 2.5380 37 1 4.8958 5.4634 1.9771 38 1 4.4584 1.3143 -0.0004 39 1 4.4132 -1.3613 -0.0047 40 1 1.6535 -2.8712 1.0284 41 1 0.1407 -3.4957 -0.7116 42 1 3.1806 -3.1479 -2.2789 43 1 4.3154 -3.5601 -0.1667 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:48:20 Heat of formation + Delta-G solvation = 78.969948 kcal Electronic energy + Delta-G solvation = -25735.222505 eV Core-core repulsion = 21978.186836 eV Total energy + Delta-G solvation = -3757.035670 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10672 -42.68411 -40.67363 -39.67782 -37.67932 -35.96870 -33.99403 -33.44990 -31.78616 -30.37107 -29.11454 -27.57204 -26.89206 -26.53354 -24.48546 -23.14333 -22.49531 -21.88844 -21.53822 -20.56784 -20.07644 -19.02169 -18.37013 -18.18608 -17.30095 -17.09282 -16.68025 -16.62169 -16.08694 -16.03711 -15.46630 -15.29083 -15.11562 -14.91351 -14.85464 -14.60154 -14.41633 -14.31903 -13.91423 -13.66594 -13.62807 -13.42777 -13.37681 -13.14163 -13.10711 -12.76829 -12.15393 -11.97112 -11.82556 -11.66138 -11.20408 -10.97075 -10.60906 -10.49558 -10.28158 -9.91681 -9.47765 -9.19744 -4.93858 0.25589 1.08845 1.14207 1.43525 1.66174 1.72366 1.86786 2.08123 2.18943 2.19655 2.27326 3.20375 3.24505 3.32990 3.58766 3.61137 3.67155 3.72628 3.81111 3.85758 3.96864 4.09175 4.22900 4.24737 4.28332 4.38324 4.41882 4.45279 4.57874 4.61538 4.64814 4.68268 4.69509 4.78524 4.84694 4.89735 4.93520 4.96504 5.15944 5.27659 5.43315 5.58736 5.81769 5.85484 6.00340 6.27443 6.38030 6.81617 7.02951 7.12645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.402 5.402 3 C -0.082 4.082 4 C 0.586 3.414 5 O -0.585 6.585 6 N -0.701 5.701 7 C 0.134 3.866 8 C -0.103 4.103 9 H 0.129 0.871 10 C -0.134 4.134 11 C 0.104 3.896 12 H 0.148 0.852 13 N -0.445 5.445 14 C -0.047 4.047 15 C -0.067 4.067 16 N -0.543 5.543 17 C 0.173 3.827 18 C -0.137 4.137 19 C -0.124 4.124 20 C -0.233 4.233 21 C 0.047 3.953 22 C -0.065 4.065 23 O -0.567 6.567 24 Si 0.818 3.182 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.418 0.582 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.204 0.796 34 H 0.174 0.826 35 H 0.216 0.784 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.179 0.821 39 H 0.155 0.845 40 H 0.103 0.897 41 H 0.409 0.591 42 H -0.311 1.311 43 H -0.278 1.278 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 -6.245 -2.594 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.075 5.075 3 C -0.195 4.195 4 C 0.375 3.625 5 O -0.467 6.467 6 N -0.353 5.353 7 C 0.011 3.989 8 C -0.122 4.122 9 H 0.147 0.853 10 C -0.173 4.173 11 C 0.002 3.998 12 H 0.165 0.835 13 N -0.126 5.126 14 C -0.180 4.180 15 C -0.213 4.213 16 N -0.262 5.262 17 C -0.110 4.110 18 C -0.175 4.175 19 C -0.150 4.150 20 C -0.256 4.256 21 C -0.072 4.072 22 C -0.173 4.173 23 O -0.378 6.378 24 Si 0.722 3.278 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.192 0.808 35 H 0.232 0.768 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.196 0.804 39 H 0.173 0.827 40 H 0.120 0.880 41 H 0.262 0.738 42 H -0.239 1.239 43 H -0.205 1.205 Dipole moment (debyes) X Y Z Total from point charges 4.424 -5.361 -2.588 7.417 hybrid contribution 0.507 0.614 -0.273 0.842 sum 4.931 -4.747 -2.861 7.419 Atomic orbital electron populations 1.22185 0.75165 1.04586 1.03902 1.43980 1.07594 1.04420 1.51472 1.20286 0.91282 0.87641 1.20315 1.17115 0.85377 0.84156 0.75876 1.90785 1.18058 1.85328 1.52540 1.45469 1.10196 1.05836 1.73811 1.21374 0.96716 0.78868 1.01936 1.22551 0.97665 0.93739 0.98201 0.85277 1.23412 0.98861 0.95427 0.99555 1.23416 1.01379 0.88847 0.86153 0.83453 1.45763 1.21982 1.19238 1.25642 1.23228 1.02776 0.90402 1.01643 1.22681 0.95630 1.02456 1.00575 1.70261 1.23627 1.05493 1.26835 1.25133 0.94381 1.00833 0.90624 1.23573 1.03497 0.93389 0.97066 1.21641 0.94793 0.95045 1.03553 1.20825 0.95071 0.96284 1.13452 1.20805 0.90883 0.88567 1.06950 1.24798 0.95304 0.93867 1.03332 1.86416 1.34969 1.37322 1.79087 0.94348 0.75111 0.83856 0.74498 0.91055 0.87947 0.89892 0.74454 0.91797 0.91885 0.88687 0.89757 0.77948 0.80830 0.76787 0.89567 0.88351 0.80385 0.82731 0.87976 0.73817 1.23935 1.20488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 9.27 127.77 1.18 1.71 16 2 N -0.40 -3.23 3.16 -519.69 -1.64 -4.88 16 3 C -0.08 -0.57 6.88 40.35 0.28 -0.29 16 4 C 0.59 4.12 7.77 86.45 0.67 4.79 16 5 O -0.58 -8.39 14.65 -4.30 -0.06 -8.46 16 6 N -0.70 1.35 5.54 -467.09 -2.59 -1.24 16 7 C 0.13 -0.49 5.50 86.38 0.48 -0.02 16 8 C -0.10 1.05 3.75 -10.27 -0.04 1.02 16 9 H 0.13 -1.80 8.14 -2.39 -0.02 -1.82 16 10 C -0.13 1.13 7.32 31.12 0.23 1.36 16 11 C 0.10 -0.84 4.64 45.57 0.21 -0.63 16 12 H 0.15 -1.81 8.14 -2.39 -0.02 -1.82 16 13 N -0.44 0.29 2.95 -503.53 -1.48 -1.19 16 14 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 15 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 16 N -0.54 -6.07 11.25 -200.31 -2.25 -8.32 16 17 C 0.17 0.74 11.38 180.26 2.05 2.79 16 18 C -0.14 1.30 7.20 31.18 0.22 1.52 16 19 C -0.12 -0.29 10.35 22.57 0.23 -0.05 16 20 C -0.23 -0.93 9.37 22.01 0.21 -0.72 16 21 C 0.05 0.24 6.18 41.34 0.26 0.50 16 22 C -0.06 0.14 2.89 71.24 0.21 0.35 16 23 O -0.57 1.64 10.47 -148.98 -1.56 0.08 16 24 Si 0.82 -3.59 31.22 68.60 2.14 -1.45 16 25 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.26 7.10 -2.39 -0.02 0.24 16 27 H 0.08 0.76 6.19 -2.39 -0.01 0.75 16 28 H 0.42 -3.35 7.38 -92.70 -0.68 -4.04 16 29 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 -0.08 7.88 -2.39 -0.02 -0.10 16 31 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.08 -0.45 7.86 -2.39 -0.02 -0.47 16 33 H 0.20 -1.28 8.06 -2.91 -0.02 -1.30 16 34 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.22 -0.19 7.45 -2.91 -0.02 -0.22 16 36 H 0.09 -0.59 6.72 -2.38 -0.02 -0.60 16 37 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.18 -1.01 7.45 -2.91 -0.02 -1.04 16 39 H 0.16 0.16 6.69 -2.91 -0.02 0.15 16 40 H 0.10 -0.66 7.96 -2.39 -0.02 -0.68 16 41 H 0.41 -5.62 8.74 -74.06 -0.65 -6.27 16 42 H -0.31 -1.66 7.11 99.48 0.71 -0.95 16 43 H -0.28 0.12 6.87 99.48 0.68 0.80 16 Total: 0.00 -30.50 355.57 0.42 -30.08 By element: Atomic # 1 Polarization: -18.14 SS G_CDS: -0.27 Total: -18.41 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 8.14 Total: 13.78 kcal Atomic # 7 Polarization: -7.66 SS G_CDS: -7.97 Total: -15.63 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.62 Total: -8.37 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.14 Total: -1.45 kcal Total: -30.50 0.42 -30.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.046 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds