Wall clock time and date at job start Sun Mar 7 2021 07:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99778 * 2 1 4 4 C 1.38401 * 120.11933 * 0.02562 * 3 2 1 5 5 C 1.38722 * 120.03285 * 179.97438 * 4 3 2 6 6 O 1.35708 * 119.86515 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00020 * 0.02562 * 6 5 4 8 8 C 1.39152 * 120.27210 * 0.04430 * 5 4 3 9 9 C 1.50697 * 119.87758 * 179.97438 * 8 5 4 10 10 O 1.42896 * 109.47164 * 284.99943 * 9 8 5 11 11 Si 1.86304 * 109.46832 * 165.00283 * 9 8 5 12 12 C 1.37581 * 120.23765 * 359.67496 * 8 5 4 13 13 C 1.39819 * 119.96634 * 0.57883 * 12 8 5 14 14 C 1.47304 * 120.13708 * 179.71573 * 13 12 8 15 15 O 1.21620 * 119.99755 * 179.72833 * 14 13 12 16 16 N 1.34774 * 119.99864 * 359.72546 * 14 13 12 17 17 C 1.46497 * 119.99932 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47203 * 180.02562 * 17 16 14 19 19 H 1.09008 * 112.84868 * 316.19908 * 18 17 16 20 20 C 1.53775 * 113.69017 * 87.47048 * 18 17 16 21 21 C 1.53779 * 87.08438 * 139.99386 * 20 18 17 22 22 H 1.09002 * 113.61731 * 89.11293 * 21 20 18 23 23 N 1.46500 * 113.68825 * 220.00754 * 21 20 18 24 24 C 1.36885 * 126.39384 * 219.05761 * 23 21 20 25 25 C 1.34672 * 106.81269 * 180.02562 * 24 23 21 26 26 N 1.34124 * 108.02489 * 0.02562 * 25 24 23 27 27 C 1.30506 * 109.25501 * 359.72119 * 26 25 24 28 28 C 1.53777 * 113.61649 * 185.00515 * 18 17 16 29 29 H 1.08993 * 109.47329 * 299.99747 * 1 2 3 30 30 H 1.09001 * 109.47426 * 59.99869 * 1 2 3 31 31 H 1.09002 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.98280 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.46982 * 299.99526 * 7 6 5 34 34 H 1.08996 * 109.47286 * 60.00005 * 7 6 5 35 35 H 1.09004 * 109.46952 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47556 * 45.00261 * 9 8 5 37 37 H 0.96700 * 114.00259 * 300.00487 * 10 9 8 38 38 H 1.48499 * 109.99999 * 58.68114 * 11 9 8 39 39 H 1.48502 * 109.99677 * 179.97438 * 11 9 8 40 40 H 1.08006 * 120.01734 * 180.29400 * 12 8 5 41 41 H 0.97004 * 120.00158 * 0.02562 * 16 14 13 42 42 H 1.09000 * 109.46697 * 60.00384 * 17 16 14 43 43 H 1.08997 * 109.47634 * 300.00373 * 17 16 14 44 44 H 1.08993 * 113.61636 * 25.43750 * 20 18 17 45 45 H 1.09008 * 113.61006 * 254.53993 * 20 18 17 46 46 H 1.08002 * 126.59412 * 0.04053 * 24 23 21 47 47 H 1.08005 * 125.98617 * 180.02562 * 25 24 23 48 48 H 1.07993 * 125.65109 * 180.29464 * 27 26 25 49 49 H 1.08997 * 113.61941 * 105.38293 * 28 18 17 50 50 H 1.09009 * 113.68972 * 334.49372 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2934 2.3711 0.0005 5 6 1.9250 3.6062 0.0011 6 8 1.1849 4.7437 0.0021 7 6 -0.2362 4.5930 0.0032 8 6 3.3144 3.6835 0.0001 9 6 3.9913 5.0300 0.0002 10 8 3.8928 5.6126 -1.3009 11 14 5.7864 4.8225 0.4534 12 6 4.0723 2.5353 0.0054 13 6 3.4461 1.2852 -0.0005 14 6 4.2539 0.0534 -0.0012 15 8 3.7066 -1.0327 -0.0013 16 7 5.5994 0.1300 -0.0017 17 6 6.4028 -1.0950 -0.0018 18 6 7.8888 -0.7305 -0.0018 19 1 8.1271 0.0746 -0.6970 20 6 8.4740 -0.5230 1.4050 21 6 9.7305 -1.2550 0.9048 22 1 10.4723 -0.5934 0.4574 23 7 10.3075 -2.1738 1.8892 24 6 11.6402 -2.3790 2.1251 25 6 11.7252 -3.2997 3.1043 26 7 10.4786 -3.6475 3.4563 27 6 9.6241 -2.9730 2.7365 28 6 8.8215 -1.9468 -0.1248 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2148 2.3164 0.0005 33 1 -0.5440 4.0442 -0.8868 34 1 -0.5426 4.0434 0.8932 35 1 -0.7058 5.5767 0.0044 36 1 3.5058 5.6808 0.7274 37 1 4.3045 5.0862 -1.9998 38 1 6.4521 3.9118 -0.5124 39 1 6.4653 6.1432 0.4563 40 1 5.1504 2.5995 0.0095 41 1 6.0360 0.9963 -0.0012 42 1 6.1721 -1.6807 -0.8917 43 1 6.1728 -1.6806 0.8883 44 1 7.9364 -1.0616 2.1854 45 1 8.6489 0.5235 1.6552 46 1 12.4649 -1.8954 1.6227 47 1 12.6374 -3.6897 3.5313 48 1 8.5487 -3.0438 2.8054 49 1 9.2769 -2.0501 -1.1097 50 1 8.3801 -2.8756 0.2368 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:48:30 Heat of formation + Delta-G solvation = -7.674616 kcal Electronic energy + Delta-G solvation = -34131.508926 eV Core-core repulsion = 29515.013833 eV Total energy + Delta-G solvation = -4616.495092 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.05108 -42.08842 -40.71730 -40.07713 -39.54256 -38.50498 -37.06457 -35.68658 -33.46510 -32.26444 -31.90166 -30.31224 -29.04520 -28.90426 -27.92794 -26.79229 -26.11791 -24.96160 -24.05864 -22.69858 -22.42409 -21.82928 -21.49005 -20.27916 -19.96978 -18.89390 -18.54551 -18.05114 -17.79424 -17.24191 -17.09702 -16.75987 -16.56194 -16.36415 -16.30265 -16.01337 -15.96608 -15.79117 -15.67375 -15.32913 -15.10883 -14.89408 -14.64061 -14.37261 -14.34403 -14.20712 -13.96654 -13.55674 -13.54018 -13.33845 -13.16871 -13.05051 -12.68906 -12.53806 -12.52605 -12.21196 -12.08097 -11.79492 -11.71843 -11.67281 -11.56084 -10.92326 -10.89234 -10.52805 -10.43544 -10.12995 -9.91442 -9.42612 -9.18486 -4.88731 -0.24969 0.08524 1.14275 1.32309 1.56103 1.74781 1.90195 2.00578 2.12917 2.13615 2.19477 2.24084 2.61784 3.32665 3.39655 3.45021 3.48110 3.62020 3.68267 3.71031 3.75152 3.83270 3.87223 4.02705 4.10825 4.17396 4.18120 4.24759 4.26761 4.27714 4.29417 4.33875 4.50037 4.56232 4.62976 4.64210 4.67087 4.69763 4.75965 4.77140 4.77260 4.85029 4.94245 4.99462 5.01086 5.04305 5.23964 5.30722 5.40899 5.52082 5.86735 6.03759 6.29109 6.33253 6.54390 6.58347 7.17994 7.26372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.304 6.304 3 C 0.216 3.784 4 C -0.312 4.312 5 C 0.214 3.786 6 O -0.313 6.313 7 C 0.012 3.988 8 C -0.198 4.198 9 C -0.075 4.075 10 O -0.547 6.547 11 Si 0.762 3.238 12 C 0.002 3.998 13 C -0.226 4.226 14 C 0.562 3.438 15 O -0.567 6.567 16 N -0.716 5.716 17 C 0.133 3.867 18 C -0.105 4.105 19 H 0.128 0.872 20 C -0.138 4.138 21 C 0.103 3.897 22 H 0.147 0.853 23 N -0.444 5.444 24 C -0.047 4.047 25 C -0.067 4.067 26 N -0.544 5.544 27 C 0.174 3.826 28 C -0.135 4.135 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.384 0.616 38 H -0.246 1.246 39 H -0.303 1.303 40 H 0.165 0.835 41 H 0.411 0.589 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.203 0.797 47 H 0.173 0.827 48 H 0.217 0.783 49 H 0.092 0.908 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 5.827 -2.198 6.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.167 3.833 4 C -0.331 4.331 5 C 0.165 3.835 6 O -0.224 6.224 7 C -0.082 4.082 8 C -0.199 4.199 9 C -0.182 4.182 10 O -0.355 6.355 11 Si 0.664 3.336 12 C -0.016 4.016 13 C -0.230 4.230 14 C 0.351 3.649 15 O -0.446 6.446 16 N -0.370 5.370 17 C 0.010 3.990 18 C -0.124 4.124 19 H 0.146 0.854 20 C -0.175 4.175 21 C 0.001 3.999 22 H 0.165 0.835 23 N -0.125 5.125 24 C -0.181 4.181 25 C -0.214 4.214 26 N -0.263 5.263 27 C -0.108 4.108 28 C -0.174 4.174 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.178 0.822 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.233 0.767 38 H -0.171 1.171 39 H -0.231 1.231 40 H 0.182 0.818 41 H 0.249 0.751 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.220 0.780 47 H 0.190 0.810 48 H 0.233 0.767 49 H 0.110 0.890 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.664 5.114 -1.625 5.407 hybrid contribution -0.708 0.645 -1.661 1.917 sum -1.372 5.759 -3.285 6.771 Atomic orbital electron populations 1.23460 0.76599 1.05718 1.02602 1.86365 1.23131 1.25963 1.86046 1.19014 0.91238 0.84630 0.88432 1.21414 1.01969 0.90838 1.18875 1.18956 0.91042 0.84826 0.88630 1.86142 1.21017 1.28767 1.86494 1.23456 0.76340 1.05808 1.02576 1.19513 0.90732 0.96642 1.13004 1.25153 1.12917 0.92368 0.87808 1.86619 1.80809 1.50785 1.17266 0.94330 0.70910 0.79689 0.88629 1.21004 1.00321 0.88763 0.91561 1.19151 0.90707 0.93926 1.19242 1.18041 0.82650 0.88265 0.75984 1.90832 1.72469 1.30366 1.50972 1.45740 1.04979 1.10714 1.75570 1.21315 0.89346 0.86385 1.01968 1.22568 0.91660 0.99721 0.98465 0.85423 1.23572 0.93978 1.02901 0.97086 1.23404 0.96034 0.91542 0.88928 0.83505 1.45764 1.06198 1.31800 1.28779 1.23212 0.86954 1.04491 1.03445 1.22662 0.95889 1.01837 1.01009 1.70262 1.01855 1.26645 1.27524 1.25149 1.00162 0.93509 0.92021 1.23421 0.95898 0.97971 1.00112 0.90958 0.91211 0.86945 0.82151 0.91551 0.91016 0.86348 0.87145 0.76718 1.17130 1.23057 0.81769 0.75116 0.92149 0.91932 0.89339 0.87876 0.78037 0.80959 0.76697 0.88957 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.29 8.56 -68.85 -0.59 -2.88 16 3 C 0.22 1.07 6.70 22.82 0.15 1.22 16 4 C -0.31 -0.25 8.01 22.42 0.18 -0.07 16 5 C 0.21 0.31 6.67 22.61 0.15 0.46 16 6 O -0.31 -0.49 9.80 -90.29 -0.88 -1.37 16 7 C 0.01 -0.07 9.80 113.37 1.11 1.04 16 8 C -0.20 0.16 5.27 -19.80 -0.10 0.05 16 9 C -0.07 0.12 2.37 71.23 0.17 0.29 16 10 O -0.55 -0.95 12.88 -148.98 -1.92 -2.87 16 11 Si 0.76 -4.95 30.23 68.60 2.07 -2.87 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -0.72 5.89 -20.00 -0.12 -0.84 16 14 C 0.56 3.16 7.76 86.63 0.67 3.83 16 15 O -0.57 -8.43 15.15 16.87 0.26 -8.18 16 16 N -0.72 2.23 5.50 -466.50 -2.57 -0.34 16 17 C 0.13 -0.56 5.52 86.38 0.48 -0.08 16 18 C -0.11 1.15 3.75 -10.27 -0.04 1.11 16 19 H 0.13 -1.88 8.14 -2.38 -0.02 -1.90 16 20 C -0.14 1.45 7.20 31.12 0.22 1.68 16 21 C 0.10 -0.91 4.64 45.52 0.21 -0.70 16 22 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 23 N -0.44 0.57 2.95 -503.80 -1.48 -0.91 16 24 C -0.05 -0.02 11.58 83.09 0.96 0.95 16 25 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 26 N -0.54 -5.82 11.25 -200.31 -2.25 -8.08 16 27 C 0.17 0.64 11.33 180.26 2.04 2.68 16 28 C -0.14 1.19 7.31 31.12 0.23 1.42 16 29 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 30 H 0.07 -0.33 7.66 -2.39 -0.02 -0.34 16 31 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.16 -0.61 4.50 -2.91 -0.01 -0.62 16 33 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 34 H 0.07 -0.57 7.65 -2.39 -0.02 -0.58 16 35 H 0.12 -0.96 8.14 -2.38 -0.02 -0.98 16 36 H 0.11 -0.06 7.82 -2.39 -0.02 -0.08 16 37 H 0.38 -1.90 8.70 -74.06 -0.64 -2.54 16 38 H -0.25 2.02 6.69 99.48 0.67 2.69 16 39 H -0.30 -0.64 7.11 99.48 0.71 0.07 16 40 H 0.17 -1.54 3.16 -2.91 -0.01 -1.55 16 41 H 0.41 -3.99 6.49 -92.71 -0.60 -4.59 16 42 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.06 -0.09 7.85 -2.39 -0.02 -0.11 16 44 H 0.09 -0.71 6.75 -2.39 -0.02 -0.73 16 45 H 0.10 -1.38 8.14 -2.38 -0.02 -1.40 16 46 H 0.20 -1.35 8.06 -2.91 -0.02 -1.38 16 47 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 48 H 0.22 -0.33 7.50 -2.91 -0.02 -0.36 16 49 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H 0.08 -0.48 7.83 -2.38 -0.02 -0.49 16 Total: 0.00 -32.14 408.02 0.99 -31.15 By element: Atomic # 1 Polarization: -18.29 SS G_CDS: -0.25 Total: -18.53 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 8.60 Total: 14.88 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -6.31 Total: -9.32 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -3.14 Total: -15.30 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: 2.07 Total: -2.87 kcal Total: -32.14 0.99 -31.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.477 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds