Wall clock time and date at job start Sun Mar 7 2021 07:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86294 * 109.47138 * 2 1 4 4 C 1.50702 * 109.47215 * 120.00355 * 2 1 3 5 5 C 1.38240 * 120.00052 * 64.99930 * 4 2 1 6 6 C 1.38235 * 119.99545 * 180.02562 * 5 4 2 7 7 C 1.38237 * 120.00113 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99489 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46919 * 90.00348 * 8 7 6 10 10 O 1.21287 * 120.00234 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00120 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00214 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47070 * 179.97438 * 12 11 9 14 14 H 1.08994 * 112.91116 * 43.74800 * 13 12 11 15 15 C 1.53787 * 113.61251 * 175.00109 * 13 12 11 16 16 C 1.53779 * 87.07963 * 139.97890 * 15 13 12 17 17 H 1.09001 * 113.61377 * 89.20020 * 16 15 13 18 18 N 1.46503 * 113.61085 * 220.01587 * 16 15 13 19 19 C 1.36878 * 126.39451 * 239.71437 * 18 16 15 20 20 C 1.34674 * 106.81574 * 179.84629 * 19 18 16 21 21 N 1.34126 * 108.01939 * 0.41891 * 20 19 18 22 22 C 1.30500 * 109.25646 * 359.73279 * 21 20 19 23 23 C 1.53779 * 87.08402 * 334.56577 * 16 15 13 24 24 C 1.38229 * 120.00113 * 0.25343 * 7 6 5 25 25 C 1.38230 * 119.99552 * 244.97759 * 4 2 1 26 26 H 0.96694 * 114.00096 * 299.99573 * 1 2 3 27 27 H 1.09007 * 109.47038 * 239.99984 * 2 1 3 28 28 H 1.48503 * 110.00297 * 299.99919 * 3 2 1 29 29 H 1.48496 * 110.00246 * 61.32145 * 3 2 1 30 30 H 1.07992 * 119.99700 * 359.97438 * 5 4 2 31 31 H 1.07998 * 119.99484 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47760 * 330.00311 * 8 7 6 33 33 H 1.09003 * 109.47027 * 209.99757 * 8 7 6 34 34 H 0.96997 * 119.99499 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.46965 * 59.99571 * 12 11 9 36 36 H 1.09003 * 109.46664 * 299.99726 * 12 11 9 37 37 H 1.08997 * 113.61028 * 254.52850 * 15 13 12 38 38 H 1.09000 * 113.61529 * 25.42990 * 15 13 12 39 39 H 1.08001 * 126.59583 * 359.97438 * 19 18 16 40 40 H 1.08003 * 125.99067 * 180.12401 * 20 19 18 41 41 H 1.07998 * 125.65240 * 180.02562 * 22 21 20 42 42 H 1.09002 * 113.61557 * 270.88569 * 23 16 15 43 43 H 1.09004 * 113.61501 * 139.97990 * 23 16 15 44 44 H 1.08004 * 120.00070 * 179.71824 * 24 7 6 45 45 H 1.07998 * 120.00457 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6847 -2.0603 1.3983 6 6 2.1451 -2.7118 2.5272 7 6 2.8526 -2.0136 3.4880 8 6 3.3539 -2.7239 4.7189 9 6 4.7352 -3.2670 4.4579 10 8 5.2606 -3.0947 3.3784 11 7 5.3868 -3.9442 5.4241 12 6 6.7298 -4.4716 5.1705 13 6 7.2392 -5.1917 6.4206 14 1 6.4841 -5.8291 6.8805 15 6 8.5951 -5.8892 6.2202 16 6 8.9657 -5.4014 7.6307 17 1 8.6838 -6.0968 8.4213 18 7 10.3511 -4.9394 7.7466 19 6 11.3099 -5.4484 8.5805 20 6 12.4327 -4.7371 8.3632 21 7 12.1641 -3.8129 7.4290 22 6 10.9192 -3.9281 7.0550 23 6 7.9528 -4.2640 7.4181 24 6 3.0951 -0.6629 3.3223 25 6 2.6391 -0.0124 2.1909 26 1 -0.3933 0.4416 0.7650 27 1 1.7923 -0.5139 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5880 2.4585 1.2242 30 1 1.1317 -2.6055 0.6478 31 1 1.9521 -3.7663 2.6585 32 1 2.6808 -3.5455 4.9639 33 1 3.3907 -2.0232 5.5531 34 1 4.9667 -4.0816 6.2875 35 1 7.4025 -3.6498 4.9254 36 1 6.6933 -5.1725 4.3365 37 1 8.5204 -6.9735 6.1388 38 1 9.2021 -5.4453 5.4311 39 1 11.1897 -6.2649 9.2771 40 1 13.3816 -4.8821 8.8583 41 1 10.4251 -3.3164 6.3147 42 1 8.3842 -3.3757 6.9565 43 1 7.3596 -4.0363 8.3038 44 1 3.6438 -0.1165 4.0752 45 1 2.8325 1.0419 2.0594 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:48:38 Heat of formation + Delta-G solvation = 51.250648 kcal Electronic energy + Delta-G solvation = -26237.089905 eV Core-core repulsion = 22416.052007 eV Total energy + Delta-G solvation = -3821.037898 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.08222 -41.18473 -40.36019 -39.65123 -37.78667 -35.66776 -34.08489 -33.39711 -31.93310 -30.48924 -30.13815 -28.38670 -26.82961 -25.74427 -24.35202 -23.81934 -22.46682 -22.21698 -21.84673 -21.26271 -20.13525 -18.69982 -18.51299 -17.78573 -17.33501 -16.94190 -16.80557 -16.38715 -16.26397 -16.16438 -15.90686 -15.71983 -15.15333 -14.96181 -14.80913 -14.69567 -14.50705 -14.41434 -14.35978 -13.98168 -13.59268 -13.35462 -13.25798 -13.15599 -13.04208 -12.79146 -12.27598 -12.11212 -12.00552 -11.75678 -11.60449 -11.59447 -10.95592 -10.92932 -10.61255 -10.46714 -10.06204 -9.87008 -9.62421 -9.45644 -4.93908 0.24395 0.45916 1.11233 1.28635 1.55525 1.68558 1.88045 1.90572 2.20774 2.21748 2.78909 3.30634 3.38800 3.40678 3.62370 3.64962 3.68681 3.80168 3.83767 3.90518 4.00152 4.05916 4.06908 4.19433 4.31484 4.36625 4.46843 4.48609 4.55266 4.61125 4.63468 4.65600 4.72606 4.73949 4.75809 4.83936 4.95142 4.97807 5.03849 5.09284 5.22271 5.38527 5.41130 5.52332 5.53923 5.59676 5.83888 6.02483 6.30143 6.46388 6.59737 7.14971 7.31799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.084 4.084 3 Si 0.763 3.237 4 C -0.125 4.125 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.511 3.489 10 O -0.580 6.580 11 N -0.717 5.717 12 C 0.132 3.868 13 C -0.100 4.100 14 H 0.130 0.870 15 C -0.137 4.137 16 C 0.102 3.898 17 H 0.147 0.853 18 N -0.445 5.445 19 C -0.048 4.048 20 C -0.067 4.067 21 N -0.543 5.543 22 C 0.173 3.827 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.126 4.126 26 H 0.386 0.614 27 H 0.118 0.882 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.419 0.581 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.203 0.797 40 H 0.174 0.826 41 H 0.217 0.783 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.141 0.859 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 -4.160 7.579 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.193 4.193 3 Si 0.668 3.332 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.298 3.702 10 O -0.460 6.460 11 N -0.370 5.370 12 C 0.008 3.992 13 C -0.119 4.119 14 H 0.148 0.852 15 C -0.176 4.176 16 C 0.000 4.000 17 H 0.164 0.836 18 N -0.126 5.126 19 C -0.181 4.181 20 C -0.214 4.214 21 N -0.262 5.262 22 C -0.109 4.109 23 C -0.173 4.173 24 C -0.129 4.129 25 C -0.143 4.143 26 H 0.235 0.765 27 H 0.136 0.864 28 H -0.230 1.230 29 H -0.204 1.204 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.220 0.780 40 H 0.191 0.809 41 H 0.233 0.767 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.159 0.841 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.868 -3.016 5.973 7.280 hybrid contribution -1.494 -0.763 0.779 1.850 sum -4.362 -3.779 6.752 8.882 Atomic orbital electron populations 1.86563 1.18486 1.80448 1.50141 1.25213 0.83454 1.11948 0.98657 0.93928 0.90634 0.72119 0.76527 1.20315 1.00260 0.95054 0.96956 1.21107 0.99341 0.94162 0.97969 1.21249 0.98052 1.00294 0.93823 1.19611 0.97362 0.93947 0.96239 1.20757 0.92917 1.02766 0.97304 1.20987 0.88068 0.77479 0.83648 1.90759 1.69676 1.59151 1.26389 1.45868 1.17749 1.56315 1.17087 1.21248 0.83228 0.97323 0.97415 1.22537 0.96831 0.97695 0.94846 0.85232 1.23433 0.96105 1.02519 0.95541 1.23421 0.76700 0.99368 1.00491 0.83568 1.45776 1.11287 1.25847 1.29732 1.23224 0.89355 1.04504 1.01066 1.22674 1.00393 0.97199 1.01096 1.70260 1.15176 1.25247 1.15555 1.25145 0.90117 0.94274 1.01389 1.23533 0.96327 0.96660 1.00828 1.21230 0.99192 0.94386 0.98093 1.21197 0.98568 1.00271 0.94262 0.76513 0.86390 1.23027 1.20369 0.85900 0.84943 0.85285 0.85005 0.74377 0.92532 0.92488 0.88951 0.90002 0.78003 0.80901 0.76709 0.89605 0.88316 0.84127 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.55 12.83 -148.98 -1.91 -4.46 16 2 C -0.08 -0.19 2.80 71.24 0.20 0.01 16 3 Si 0.76 0.26 29.88 68.60 2.05 2.31 16 4 C -0.13 -0.39 5.35 -19.87 -0.11 -0.50 16 5 C -0.11 -0.43 9.69 22.27 0.22 -0.21 16 6 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 7 C -0.07 -0.01 4.37 -19.87 -0.09 -0.10 16 8 C -0.10 0.68 5.83 29.10 0.17 0.85 16 9 C 0.51 -0.73 7.82 87.66 0.69 -0.05 16 10 O -0.58 -5.56 16.03 -3.05 -0.05 -5.61 16 11 N -0.72 5.87 5.56 -463.06 -2.57 3.30 16 12 C 0.13 -0.88 5.51 86.38 0.48 -0.40 16 13 C -0.10 1.26 3.76 -10.27 -0.04 1.22 16 14 H 0.13 -2.15 8.14 -2.39 -0.02 -2.17 16 15 C -0.14 1.33 7.32 31.12 0.23 1.55 16 16 C 0.10 -0.96 4.64 45.52 0.21 -0.75 16 17 H 0.15 -1.96 8.14 -2.39 -0.02 -1.98 16 18 N -0.44 0.74 2.94 -503.80 -1.48 -0.75 16 19 C -0.05 0.00 11.58 83.09 0.96 0.96 16 20 C -0.07 -0.41 11.87 83.53 0.99 0.58 16 21 N -0.54 -5.62 11.25 -200.31 -2.25 -7.87 16 22 C 0.17 0.57 11.37 180.26 2.05 2.62 16 23 C -0.14 1.56 7.18 31.12 0.22 1.78 16 24 C -0.11 -0.06 9.70 22.27 0.22 0.15 16 25 C -0.13 -0.19 8.67 22.27 0.19 0.00 16 26 H 0.39 -0.51 8.70 -74.06 -0.64 -1.16 16 27 H 0.12 0.19 7.96 -2.38 -0.02 0.17 16 28 H -0.30 -2.34 7.11 99.48 0.71 -1.63 16 29 H -0.28 -0.84 7.01 99.48 0.70 -0.14 16 30 H 0.12 0.41 8.06 -2.91 -0.02 0.38 16 31 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 32 H 0.13 -1.52 8.09 -2.39 -0.02 -1.54 16 33 H 0.13 -1.62 8.08 -2.39 -0.02 -1.64 16 34 H 0.42 -6.38 8.47 -92.71 -0.79 -7.17 16 35 H 0.06 -0.18 7.84 -2.39 -0.02 -0.20 16 36 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.08 -0.50 7.86 -2.39 -0.02 -0.52 16 39 H 0.20 -1.43 8.06 -2.91 -0.02 -1.45 16 40 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.22 -0.44 7.43 -2.91 -0.02 -0.46 16 42 H 0.09 -0.75 6.67 -2.39 -0.02 -0.77 16 43 H 0.10 -1.35 8.14 -2.39 -0.02 -1.37 16 44 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 45 H 0.14 -0.26 4.85 -2.91 -0.01 -0.27 16 Total: 0.00 -28.90 376.75 0.20 -28.70 By element: Atomic # 1 Polarization: -22.94 SS G_CDS: -0.39 Total: -23.32 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 6.81 Total: 7.70 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: -6.31 Total: -5.32 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -1.96 Total: -10.07 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: 2.05 Total: 2.31 kcal Total: -28.90 0.20 -28.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.948 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds