Wall clock time and date at job start Sun Mar 7 2021 07:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35654 * 116.99972 * 2 1 4 4 C 1.40145 * 120.15189 * 180.02562 * 3 2 1 5 5 C 1.47536 * 120.18915 * 359.95157 * 4 3 2 6 6 O 1.21595 * 119.99934 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99813 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47237 * 179.72043 * 8 7 5 10 10 H 1.09002 * 112.84900 * 43.80541 * 9 8 7 11 11 C 1.53782 * 113.61474 * 174.99495 * 9 8 7 12 12 C 1.53780 * 87.07932 * 139.97980 * 11 9 8 13 13 H 1.09011 * 113.60819 * 89.11953 * 12 11 9 14 14 N 1.46492 * 113.61868 * 220.01725 * 12 11 9 15 15 C 1.36878 * 126.40340 * 239.71731 * 14 12 11 16 16 C 1.34663 * 106.82211 * 179.84243 * 15 14 12 17 17 N 1.34129 * 108.02047 * 0.41993 * 16 15 14 18 18 C 1.30499 * 109.25411 * 359.73603 * 17 16 15 19 19 C 1.53778 * 113.61504 * 272.49537 * 9 8 7 20 20 C 1.39707 * 119.61718 * 180.23251 * 4 3 2 21 21 C 1.37784 * 119.90919 * 359.53371 * 20 4 3 22 22 C 1.50698 * 119.85299 * 180.18940 * 21 20 4 23 23 O 1.42901 * 109.47149 * 300.25687 * 22 21 20 24 24 Si 1.86294 * 109.47587 * 180.25079 * 22 21 20 25 25 C 1.38553 * 120.29734 * 0.44184 * 21 20 4 26 26 C 1.38055 * 120.39216 * 359.79059 * 25 21 20 27 27 H 1.08994 * 109.47152 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46779 * 300.00244 * 1 2 3 29 29 H 1.09005 * 109.47297 * 59.99602 * 1 2 3 30 30 H 0.97005 * 120.00161 * 359.72201 * 7 5 4 31 31 H 1.09001 * 109.46512 * 299.72412 * 8 7 5 32 32 H 1.08998 * 109.47174 * 59.71534 * 8 7 5 33 33 H 1.08995 * 113.61743 * 254.53089 * 11 9 8 34 34 H 1.09004 * 113.60877 * 25.43489 * 11 9 8 35 35 H 1.08004 * 126.58539 * 359.97438 * 15 14 12 36 36 H 1.08005 * 125.99419 * 180.12039 * 16 15 14 37 37 H 1.07999 * 125.65186 * 179.97438 * 18 17 16 38 38 H 1.08991 * 113.61424 * 334.56676 * 19 9 8 39 39 H 1.09002 * 113.61088 * 105.47232 * 19 9 8 40 40 H 1.08001 * 120.04173 * 179.72178 * 20 4 3 41 41 H 1.09003 * 109.46755 * 60.25135 * 22 21 20 42 42 H 0.96697 * 113.99429 * 300.00170 * 23 22 21 43 43 H 1.48507 * 109.99477 * 58.68140 * 24 22 21 44 44 H 1.48494 * 110.00455 * 179.97438 * 24 22 21 45 45 H 1.08007 * 119.80021 * 179.76435 * 25 21 20 46 46 H 1.07994 * 119.95617 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4442 1.2858 -0.0005 5 6 4.2550 0.0532 0.0000 6 8 3.7095 -1.0335 0.0004 7 7 5.6005 0.1318 0.0000 8 6 6.4057 -1.0921 -0.0001 9 6 7.8911 -0.7253 -0.0071 10 1 8.1311 0.0818 0.6851 11 6 8.8262 -1.9401 0.1152 12 6 9.7287 -1.2505 -0.9215 13 1 10.4720 -0.5863 -0.4803 14 7 10.3004 -2.1714 -1.9070 15 6 11.6317 -2.3942 -2.1339 16 6 11.7113 -3.3124 -3.1159 17 7 10.4627 -3.6344 -3.4850 18 6 9.6123 -2.9549 -2.7652 19 6 8.4687 -0.5218 -1.4177 20 6 4.0668 2.5364 0.0044 21 6 3.3038 3.6837 0.0000 22 6 3.9767 5.0321 0.0010 23 8 4.7923 5.1566 1.1678 24 14 2.6826 6.3721 0.0021 25 6 1.9206 3.6033 0.0000 26 6 1.2924 2.3739 0.0000 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 6.0357 0.9987 -0.0044 31 1 6.1797 -1.6756 0.8924 32 1 6.1725 -1.6804 -0.8875 33 1 9.2869 -2.0393 1.0980 34 1 8.3829 -2.8698 -0.2415 35 1 12.4593 -1.9255 -1.6222 36 1 12.6211 -3.7150 -3.5362 37 1 8.5366 -3.0096 -2.8432 38 1 7.9278 -1.0638 -2.1933 39 1 8.6409 0.5240 -1.6723 40 1 5.1447 2.6038 0.0085 41 1 4.5987 5.1284 -0.8889 42 1 4.3038 5.0807 1.9989 43 1 1.8080 6.2326 1.1942 44 1 3.3334 7.7069 0.0037 45 1 1.3303 4.5078 0.0004 46 1 0.2139 2.3195 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:49:21 Heat of formation + Delta-G solvation = 25.415890 kcal Electronic energy + Delta-G solvation = -29333.568393 eV Core-core repulsion = 25192.728024 eV Total energy + Delta-G solvation = -4140.840369 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.09387 -41.77205 -40.48319 -39.58534 -39.22080 -37.22183 -35.74847 -33.58607 -32.65887 -31.83333 -30.35821 -29.04607 -28.35999 -26.85611 -26.15582 -25.35141 -24.23647 -22.57128 -22.43842 -21.87208 -21.43421 -20.23961 -19.52258 -18.60615 -18.29618 -18.04114 -17.21367 -16.96163 -16.78901 -16.57067 -16.14692 -16.09698 -16.03372 -15.89804 -15.74996 -15.15480 -14.89537 -14.69982 -14.54973 -14.50951 -14.40632 -14.34916 -13.61559 -13.54977 -13.47929 -13.34399 -13.08991 -13.07501 -12.43078 -12.23383 -12.13303 -12.04721 -11.79721 -11.68373 -11.62017 -11.02952 -10.95593 -10.55858 -10.47976 -10.30242 -10.03105 -9.46277 -9.28680 -4.89010 -0.25913 0.22143 1.10389 1.34273 1.62257 1.77864 1.85860 2.00024 2.11130 2.20442 2.27390 2.68557 3.27005 3.34334 3.42649 3.58233 3.62464 3.63216 3.68278 3.74674 3.82833 3.97952 3.99790 4.12576 4.17659 4.28145 4.30330 4.35584 4.41260 4.45072 4.59579 4.63355 4.64712 4.67117 4.70840 4.71389 4.75639 4.81578 4.91521 4.94181 4.95337 5.11834 5.18933 5.27838 5.36075 5.47124 5.57307 5.83237 6.28757 6.29965 6.51235 6.52239 7.14082 7.21237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.197 4.197 5 C 0.554 3.446 6 O -0.567 6.567 7 N -0.714 5.714 8 C 0.133 3.867 9 C -0.103 4.103 10 H 0.128 0.872 11 C -0.134 4.134 12 C 0.105 3.895 13 H 0.148 0.852 14 N -0.444 5.444 15 C -0.047 4.047 16 C -0.066 4.066 17 N -0.543 5.543 18 C 0.173 3.827 19 C -0.137 4.137 20 C -0.015 4.015 21 C -0.165 4.165 22 C -0.070 4.070 23 O -0.545 6.545 24 Si 0.756 3.244 25 C -0.043 4.043 26 C -0.213 4.213 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.413 0.587 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.204 0.796 36 H 0.175 0.825 37 H 0.215 0.785 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.154 0.846 41 H 0.132 0.868 42 H 0.386 0.614 43 H -0.282 1.282 44 H -0.306 1.306 45 H 0.156 0.844 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 7.966 2.492 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.121 3.879 4 C -0.201 4.201 5 C 0.343 3.657 6 O -0.447 6.447 7 N -0.368 5.368 8 C 0.010 3.990 9 C -0.122 4.122 10 H 0.146 0.854 11 C -0.173 4.173 12 C 0.002 3.998 13 H 0.165 0.835 14 N -0.126 5.126 15 C -0.181 4.181 16 C -0.213 4.213 17 N -0.262 5.262 18 C -0.109 4.109 19 C -0.175 4.175 20 C -0.033 4.033 21 C -0.165 4.165 22 C -0.179 4.179 23 O -0.354 6.354 24 Si 0.663 3.337 25 C -0.061 4.061 26 C -0.232 4.232 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.251 0.749 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.220 0.780 36 H 0.192 0.808 37 H 0.232 0.768 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.171 0.829 41 H 0.150 0.850 42 H 0.236 0.764 43 H -0.209 1.209 44 H -0.235 1.235 45 H 0.173 0.827 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.271 7.238 1.962 7.836 hybrid contribution 0.479 0.265 1.600 1.691 sum -1.792 7.503 3.562 8.497 Atomic orbital electron populations 1.23440 0.76576 1.05429 1.02844 1.86335 1.23159 1.26472 1.86565 1.19450 0.91468 0.85510 0.91478 1.19422 0.91080 0.94088 1.15477 1.18309 0.82768 0.88575 0.76052 1.90824 1.72618 1.30425 1.50830 1.45762 1.05009 1.10752 1.75258 1.21306 0.89456 0.86484 1.01780 1.22549 0.91604 0.99790 0.98235 0.85404 1.23420 0.95879 0.97903 1.00121 1.23383 0.96027 0.91474 0.88867 0.83451 1.45763 1.06265 1.32066 1.28521 1.23226 0.86961 1.04333 1.03560 1.22677 0.95841 1.02009 1.00782 1.70263 1.01951 1.26428 1.27542 1.25131 1.00116 0.93935 0.91764 1.23541 0.94213 1.02595 0.97157 1.21107 1.00820 0.88994 0.92397 1.20178 0.93751 0.95927 1.06681 1.25054 1.02793 0.98638 0.91417 1.86571 1.37734 1.94464 1.16592 0.94211 0.77714 0.74128 0.87683 1.21280 0.93928 0.97808 0.93054 1.21460 1.01743 0.90947 1.09002 0.87534 0.91009 0.90681 0.74909 0.92159 0.92255 0.88739 0.89834 0.77963 0.80813 0.76827 0.89561 0.88391 0.82872 0.84992 0.76434 1.20876 1.23474 0.82676 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.46 8.57 -68.78 -0.59 -3.05 16 3 C 0.17 0.72 6.70 22.84 0.15 0.88 16 4 C -0.20 -0.68 5.89 -20.01 -0.12 -0.80 16 5 C 0.55 3.86 7.76 86.70 0.67 4.53 16 6 O -0.57 -9.29 15.16 16.90 0.26 -9.03 16 7 N -0.71 1.11 5.51 -466.26 -2.57 -1.45 16 8 C 0.13 -0.34 5.51 86.38 0.48 0.14 16 9 C -0.10 0.97 3.75 -10.27 -0.04 0.93 16 10 H 0.13 -1.67 8.14 -2.39 -0.02 -1.69 16 11 C -0.13 1.03 7.32 31.12 0.23 1.26 16 12 C 0.10 -0.79 4.64 45.52 0.21 -0.57 16 13 H 0.15 -1.72 8.14 -2.38 -0.02 -1.74 16 14 N -0.44 0.09 2.94 -503.81 -1.48 -1.39 16 15 C -0.05 -0.05 11.58 83.09 0.96 0.91 16 16 C -0.07 -0.47 11.87 83.52 0.99 0.52 16 17 N -0.54 -6.24 11.25 -200.31 -2.25 -8.49 16 18 C 0.17 0.82 11.37 180.26 2.05 2.87 16 19 C -0.14 1.20 7.18 31.12 0.22 1.42 16 20 C -0.01 0.04 9.08 22.52 0.20 0.25 16 21 C -0.16 0.76 5.39 -19.90 -0.11 0.65 16 22 C -0.07 0.42 2.81 71.24 0.20 0.62 16 23 O -0.55 1.82 12.76 -148.98 -1.90 -0.08 16 24 Si 0.76 -4.54 29.77 68.60 2.04 -2.49 16 25 C -0.04 0.22 8.66 22.30 0.19 0.41 16 26 C -0.21 0.50 9.03 22.34 0.20 0.70 16 27 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.07 -0.37 7.66 -2.39 -0.02 -0.38 16 29 H 0.07 -0.41 7.66 -2.38 -0.02 -0.43 16 30 H 0.41 -3.24 6.50 -92.70 -0.60 -3.84 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 0.03 7.84 -2.39 -0.02 0.01 16 33 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.08 -0.37 7.86 -2.38 -0.02 -0.39 16 35 H 0.20 -1.22 8.06 -2.91 -0.02 -1.24 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.22 -0.06 7.43 -2.91 -0.02 -0.08 16 38 H 0.09 -0.52 6.67 -2.39 -0.02 -0.54 16 39 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H 0.15 -1.18 6.40 -2.91 -0.02 -1.20 16 41 H 0.13 -1.10 7.96 -2.39 -0.02 -1.12 16 42 H 0.39 -3.12 8.70 -74.06 -0.64 -3.76 16 43 H -0.28 0.61 7.11 99.48 0.71 1.31 16 44 H -0.31 -0.83 7.11 99.48 0.71 -0.12 16 45 H 0.16 -1.55 4.85 -2.91 -0.01 -1.56 16 46 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 Total: 0.00 -30.67 379.36 0.94 -29.73 By element: Atomic # 1 Polarization: -19.36 SS G_CDS: -0.18 Total: -19.54 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 7.62 Total: 15.80 kcal Atomic # 7 Polarization: -5.03 SS G_CDS: -6.30 Total: -11.34 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -2.23 Total: -12.16 kcal Atomic # 14 Polarization: -4.54 SS G_CDS: 2.04 Total: -2.49 kcal Total: -30.67 0.94 -29.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.142 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds