Wall clock time and date at job start Sun Mar 7 2021 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.47108 * 2 1 4 4 C 1.50701 * 109.47233 * 120.00228 * 2 1 3 5 5 C 1.37818 * 119.94045 * 14.97802 * 4 2 1 6 6 C 1.39667 * 119.87996 * 180.02562 * 5 4 2 7 7 C 1.47725 * 120.11575 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00242 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99615 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00047 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47191 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85116 * 45.33992 * 11 10 9 13 13 C 1.53791 * 113.61043 * 176.52870 * 11 10 9 14 14 C 1.53779 * 87.07623 * 139.98441 * 13 11 10 15 15 H 1.08998 * 113.61960 * 89.11526 * 14 13 11 16 16 N 1.46504 * 113.61498 * 219.93412 * 14 13 11 17 17 C 1.36878 * 126.40024 * 239.71832 * 16 14 13 18 18 C 1.34670 * 106.82029 * 179.83664 * 17 16 14 19 19 N 1.34130 * 108.01546 * 0.42270 * 18 17 16 20 20 C 1.30498 * 109.25756 * 359.72883 * 19 18 17 21 21 C 1.53777 * 113.61696 * 274.13353 * 11 10 9 22 22 C 1.39627 * 119.76396 * 359.75193 * 6 5 4 23 23 C 1.37860 * 119.88048 * 0.52491 * 22 6 5 24 24 C 1.38636 * 120.11685 * 359.44899 * 23 22 6 25 25 F 1.35093 * 119.88338 * 180.27883 * 24 23 22 26 26 H 0.96695 * 114.00097 * 299.99683 * 1 2 3 27 27 H 1.09004 * 109.47058 * 240.00368 * 2 1 3 28 28 H 1.48505 * 110.00330 * 178.67986 * 3 2 1 29 29 H 1.48503 * 110.00205 * 300.00111 * 3 2 1 30 30 H 1.08005 * 120.05906 * 0.02562 * 5 4 2 31 31 H 0.96997 * 120.00341 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46971 * 299.99807 * 10 9 7 33 33 H 1.09002 * 109.46700 * 59.99711 * 10 9 7 34 34 H 1.08992 * 113.60986 * 254.52755 * 13 11 10 35 35 H 1.08995 * 113.61604 * 25.43928 * 13 11 10 36 36 H 1.08001 * 126.58762 * 359.97438 * 17 16 14 37 37 H 1.07997 * 125.98965 * 180.11132 * 18 17 16 38 38 H 1.08003 * 125.64716 * 179.97438 * 20 19 18 39 39 H 1.08998 * 113.61520 * 334.57558 * 21 11 10 40 40 H 1.09007 * 113.61373 * 105.47211 * 21 11 10 41 41 H 1.08004 * 120.06354 * 180.25064 * 22 6 5 42 42 H 1.08002 * 119.94551 * 179.73258 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.0730 -1.4943 1.9708 6 6 1.5398 -2.1518 3.1112 7 6 0.6243 -2.9938 3.9082 8 8 -0.5377 -3.1150 3.5722 9 7 1.0772 -3.6267 5.0086 10 6 0.1693 -4.4612 5.7994 11 6 0.9292 -5.0601 6.9847 12 1 1.5532 -4.3298 7.5000 13 6 0.0427 -5.8887 7.9295 14 6 1.2126 -6.8819 8.0284 15 1 1.9152 -6.6508 8.8290 16 7 0.7925 -8.2854 8.0278 17 6 1.0262 -9.2037 9.0156 18 6 0.4681 -10.3609 8.6120 19 7 -0.0832 -10.1572 7.4063 20 6 0.1072 -8.9163 7.0500 21 6 1.6627 -6.3691 6.6483 22 6 2.8761 -2.0149 3.4920 23 6 3.7249 -1.2238 2.7475 24 6 3.2564 -0.5738 1.6160 25 9 4.0937 0.1958 0.8868 26 1 -0.3933 0.4416 0.7650 27 1 1.7924 -0.5138 -0.8901 28 1 3.5346 1.7703 0.0321 29 1 1.5615 2.4679 -1.2085 30 1 0.0412 -1.6000 1.6696 31 1 2.0043 -3.5296 5.2769 32 1 -0.6565 -3.8522 6.1671 33 1 -0.2217 -5.2649 5.1754 34 1 -0.1832 -5.3853 8.8695 35 1 -0.8422 -6.3030 7.4466 36 1 1.5547 -9.0324 9.9418 37 1 0.4690 -11.2912 9.1605 38 1 -0.2275 -8.4682 6.1261 39 1 1.2214 -6.9150 5.8144 40 1 2.7426 -6.2531 6.5555 41 1 3.2432 -2.5244 4.3707 42 1 4.7577 -1.1138 3.0435 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:49:24 Heat of formation + Delta-G solvation = 22.905108 kcal Electronic energy + Delta-G solvation = -27093.827541 eV Core-core repulsion = 22957.644131 eV Total energy + Delta-G solvation = -4136.183410 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.41483 -43.07564 -41.42656 -40.17378 -39.44436 -37.70399 -35.84873 -33.57289 -32.72973 -31.99428 -30.34678 -28.94673 -27.07765 -26.81960 -25.22275 -23.98591 -23.24400 -22.46445 -21.86073 -21.47302 -20.21373 -19.34195 -18.78872 -18.52973 -17.79296 -17.70052 -17.13438 -16.96888 -16.68239 -16.21014 -16.08847 -15.88250 -15.79439 -15.17373 -15.15375 -15.06398 -14.82778 -14.72213 -14.42822 -14.38896 -14.02049 -13.74092 -13.58069 -13.39999 -13.32901 -13.08637 -12.76748 -12.35382 -12.10332 -11.77894 -11.60461 -11.43678 -11.13693 -10.94328 -10.90720 -10.46161 -10.25073 -10.02037 -9.69570 -9.45338 -5.05006 -0.49403 0.03974 1.11578 1.20738 1.59773 1.62944 1.87002 1.94680 2.06644 2.21405 2.60853 3.00825 3.24674 3.30561 3.34065 3.38707 3.62589 3.65164 3.70301 3.73544 3.83954 3.99809 4.02333 4.09691 4.14691 4.31818 4.35464 4.47400 4.58258 4.61837 4.66987 4.74360 4.75888 4.80805 4.83962 4.91591 4.95051 4.99104 5.03600 5.11343 5.21463 5.33695 5.48231 5.62249 5.84249 6.30747 6.45487 6.60734 7.13305 7.15384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.072 4.072 3 Si 0.763 3.237 4 C -0.158 4.158 5 C -0.031 4.031 6 C -0.150 4.150 7 C 0.558 3.442 8 O -0.578 6.578 9 N -0.707 5.707 10 C 0.130 3.870 11 C -0.101 4.101 12 H 0.133 0.867 13 C -0.136 4.136 14 C 0.102 3.898 15 H 0.148 0.852 16 N -0.444 5.444 17 C -0.047 4.047 18 C -0.068 4.068 19 N -0.544 5.544 20 C 0.173 3.827 21 C -0.138 4.138 22 C -0.043 4.043 23 C -0.146 4.146 24 C 0.103 3.897 25 F -0.132 7.132 26 H 0.397 0.603 27 H 0.113 0.887 28 H -0.255 1.255 29 H -0.306 1.306 30 H 0.141 0.859 31 H 0.417 0.583 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.204 0.796 37 H 0.173 0.827 38 H 0.216 0.784 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.177 0.823 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 4.791 8.081 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.181 4.181 3 Si 0.667 3.333 4 C -0.159 4.159 5 C -0.050 4.050 6 C -0.153 4.153 7 C 0.346 3.654 8 O -0.459 6.459 9 N -0.360 5.360 10 C 0.006 3.994 11 C -0.120 4.120 12 H 0.151 0.849 13 C -0.175 4.175 14 C 0.000 4.000 15 H 0.165 0.835 16 N -0.126 5.126 17 C -0.180 4.180 18 C -0.215 4.215 19 N -0.263 5.263 20 C -0.110 4.110 21 C -0.176 4.176 22 C -0.061 4.061 23 C -0.164 4.164 24 C 0.084 3.916 25 F -0.110 7.110 26 H 0.247 0.753 27 H 0.130 0.870 28 H -0.181 1.181 29 H -0.234 1.234 30 H 0.159 0.841 31 H 0.256 0.744 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.221 0.779 37 H 0.190 0.810 38 H 0.232 0.768 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.194 0.806 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.864 4.532 6.442 9.819 hybrid contribution 0.608 -0.157 -0.213 0.663 sum 6.472 4.375 6.229 9.991 Atomic orbital electron populations 1.86478 1.16815 1.81928 1.50723 1.25079 0.85633 1.10782 0.96637 0.94363 0.78733 0.74346 0.85826 1.20259 0.93015 1.02583 1.00056 1.20901 1.00537 0.91703 0.91809 1.19974 0.95146 1.02237 0.97982 1.18353 0.86808 0.79388 0.80877 1.90817 1.19794 1.64468 1.70812 1.45720 1.15287 1.48717 1.26230 1.21364 0.92586 0.93821 0.91590 1.22558 0.97919 0.96270 0.95208 0.84881 1.23421 0.96922 0.95872 1.01237 1.23461 0.99128 0.75606 1.01827 0.83451 1.45772 1.40808 1.10840 1.15175 1.23223 1.07693 0.89828 0.97287 1.22671 1.04111 1.00038 0.94634 1.70258 1.24142 1.16956 1.14992 1.25137 0.99917 0.88925 0.96988 1.23584 1.03000 0.95736 0.95294 1.21510 0.90353 0.95023 0.99224 1.21411 1.02998 0.98125 0.93880 1.18037 0.87394 0.93736 0.92437 1.91553 1.71233 1.72004 1.76240 0.75282 0.86961 1.18055 1.23396 0.84079 0.74379 0.91595 0.92226 0.88713 0.89961 0.77937 0.80958 0.76754 0.89728 0.88161 0.80578 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.80 11.64 -148.98 -1.73 -2.53 16 2 C -0.07 -0.05 2.96 71.24 0.21 0.16 16 3 Si 0.76 -0.33 30.81 68.60 2.11 1.79 16 4 C -0.16 0.05 5.13 -19.86 -0.10 -0.05 16 5 C -0.03 -0.01 8.78 22.52 0.20 0.18 16 6 C -0.15 0.38 5.87 -20.09 -0.12 0.26 16 7 C 0.56 0.18 7.77 86.75 0.67 0.85 16 8 O -0.58 -5.84 16.34 -3.93 -0.06 -5.90 16 9 N -0.71 5.58 5.51 -466.08 -2.57 3.02 16 10 C 0.13 -0.98 5.50 86.38 0.47 -0.50 16 11 C -0.10 1.38 3.75 -10.27 -0.04 1.34 16 12 H 0.13 -2.43 8.14 -2.39 -0.02 -2.45 16 13 C -0.14 1.46 7.33 31.12 0.23 1.69 16 14 C 0.10 -1.04 4.64 45.57 0.21 -0.83 16 15 H 0.15 -2.13 8.14 -2.39 -0.02 -2.14 16 16 N -0.44 0.94 2.95 -503.50 -1.48 -0.54 16 17 C -0.05 0.02 11.58 83.09 0.96 0.98 16 18 C -0.07 -0.40 11.87 83.52 0.99 0.59 16 19 N -0.54 -5.61 11.25 -200.31 -2.25 -7.86 16 20 C 0.17 0.53 11.38 180.26 2.05 2.59 16 21 C -0.14 1.69 7.20 31.18 0.22 1.91 16 22 C -0.04 0.39 9.54 22.52 0.21 0.60 16 23 C -0.15 1.03 10.01 22.28 0.22 1.25 16 24 C 0.10 -0.15 6.67 22.47 0.15 0.00 16 25 F -0.13 -0.26 12.82 44.97 0.58 0.32 16 26 H 0.40 -2.59 8.43 -74.06 -0.62 -3.21 16 27 H 0.11 0.25 7.96 -2.38 -0.02 0.23 16 28 H -0.26 -0.95 5.27 99.48 0.52 -0.43 16 29 H -0.31 -2.23 7.11 99.48 0.71 -1.52 16 30 H 0.14 0.44 6.66 -2.91 -0.02 0.42 16 31 H 0.42 -6.38 6.50 -92.71 -0.60 -6.98 16 32 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.06 -0.24 7.87 -2.39 -0.02 -0.26 16 34 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 35 H 0.08 -0.59 7.86 -2.39 -0.02 -0.61 16 36 H 0.20 -1.53 8.06 -2.91 -0.02 -1.55 16 37 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.22 -0.46 7.45 -2.91 -0.02 -0.48 16 39 H 0.08 -0.77 6.72 -2.39 -0.02 -0.79 16 40 H 0.10 -1.47 8.14 -2.38 -0.02 -1.49 16 41 H 0.18 -3.11 6.40 -2.91 -0.02 -3.13 16 42 H 0.17 -2.03 8.06 -2.91 -0.02 -2.05 16 Total: 0.00 -28.96 354.40 0.85 -28.11 By element: Atomic # 1 Polarization: -27.13 SS G_CDS: -0.30 Total: -27.42 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.56 Total: 11.03 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -6.30 Total: -5.39 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -1.80 Total: -8.43 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.58 Total: 0.32 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.11 Total: 1.79 kcal Total: -28.96 0.85 -28.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds