Wall clock time and date at job start Sun Mar 7 2021 07:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47560 * 125.94613 * 180.28489 * 7 6 5 9 9 C 1.39921 * 119.95672 * 359.72916 * 8 7 6 10 10 C 1.36433 * 120.28012 * 179.75983 * 9 8 7 11 11 C 1.39873 * 120.18490 * 0.51431 * 10 9 8 12 12 C 1.47294 * 120.04781 * 179.76178 * 11 10 9 13 13 O 1.21620 * 120.00126 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00534 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47251 * 179.97438 * 15 14 12 17 17 H 1.09005 * 112.85349 * 43.80643 * 16 15 14 18 18 C 1.53782 * 113.61195 * 174.99770 * 16 15 14 19 19 C 1.53783 * 87.08230 * 139.98354 * 18 16 15 20 20 H 1.08999 * 113.61170 * 89.19997 * 19 18 16 21 21 N 1.46496 * 113.61289 * 220.02042 * 19 18 16 22 22 C 1.36883 * 126.39623 * 239.70693 * 21 19 18 23 23 C 1.34670 * 106.81487 * 179.84560 * 22 21 19 24 24 N 1.34126 * 108.02394 * 0.42585 * 23 22 21 25 25 C 1.30501 * 109.25511 * 359.73021 * 24 23 22 26 26 C 1.53774 * 113.61767 * 272.49440 * 16 15 14 27 27 C 1.40409 * 119.90516 * 359.73601 * 11 10 9 28 28 O 1.35686 * 120.13473 * 179.97438 * 27 11 10 29 29 C 1.38269 * 119.72816 * 0.02562 * 27 11 10 30 30 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 31 31 H 0.96697 * 113.99847 * 59.99973 * 1 2 3 32 32 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 33 33 H 1.48496 * 110.00038 * 59.99853 * 3 2 1 34 34 H 1.48502 * 110.00192 * 181.31939 * 3 2 1 35 35 H 1.08005 * 126.47473 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 37 37 H 1.08004 * 119.86060 * 0.02562 * 9 8 7 38 38 H 1.07994 * 119.90818 * 180.23060 * 10 9 8 39 39 H 0.97010 * 119.99913 * 359.97438 * 14 12 11 40 40 H 1.08997 * 109.46317 * 299.99889 * 15 14 12 41 41 H 1.08996 * 109.46470 * 59.99106 * 15 14 12 42 42 H 1.09001 * 113.61507 * 254.53198 * 18 16 15 43 43 H 1.09004 * 113.61529 * 25.43268 * 18 16 15 44 44 H 1.07997 * 126.58919 * 359.97438 * 22 21 19 45 45 H 1.08003 * 125.98663 * 180.19348 * 23 22 21 46 46 H 1.07998 * 125.65349 * 179.97438 * 25 24 23 47 47 H 1.08999 * 113.61473 * 334.57150 * 26 16 15 48 48 H 1.09004 * 113.61656 * 105.47148 * 26 16 15 49 49 H 0.96691 * 114.00443 * 270.02927 * 28 27 11 50 50 H 1.08003 * 120.09644 * 180.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4128 9 6 3.8738 -1.9164 5.2977 10 6 4.5703 -1.7177 6.4539 11 6 5.0643 -0.4473 6.7679 12 6 5.8113 -0.2351 8.0194 13 8 6.2408 0.8698 8.2914 14 7 6.0189 -1.2652 8.8633 15 6 6.7614 -1.0541 10.1084 16 6 6.8537 -2.3736 10.8772 17 1 7.0990 -3.2206 10.2364 18 6 7.7205 -2.2888 12.1446 19 6 6.6680 -3.1770 12.8289 20 1 6.8623 -4.2443 12.7236 21 7 6.3780 -2.7851 14.2104 22 6 6.5393 -3.5618 15.3259 23 6 6.1595 -2.8140 16.3795 24 7 5.7679 -1.6167 15.9190 25 6 5.8960 -1.5921 14.6206 26 6 5.6567 -2.6294 11.8080 27 6 4.8474 0.6252 5.8880 28 8 5.3241 1.8596 6.1882 29 6 4.1453 0.4185 4.7149 30 8 2.6271 -0.1463 2.2303 31 1 -0.3933 0.4417 -0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 1.5615 2.4679 1.2084 34 1 3.5346 1.7703 -0.0321 35 1 1.2458 -2.7432 0.8933 36 1 2.4304 -3.2076 3.2685 37 1 3.4913 -2.8987 5.0624 38 1 4.7368 -2.5426 7.1308 39 1 5.6759 -2.1464 8.6466 40 1 7.7648 -0.6971 9.8768 41 1 6.2442 -0.3137 10.7187 42 1 8.6943 -2.7671 12.0404 43 1 7.7837 -1.2846 12.5640 44 1 6.9034 -4.5781 15.3555 45 1 6.1653 -3.1253 17.4137 46 1 5.6559 -0.7564 13.9800 47 1 5.1556 -1.7184 12.1353 48 1 4.9643 -3.3827 11.4320 49 1 4.7076 2.4072 6.6931 50 1 3.9754 1.2392 4.0336 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:49:37 Heat of formation + Delta-G solvation = 37.320245 kcal Electronic energy + Delta-G solvation = -34846.404719 eV Core-core repulsion = 30002.719948 eV Total energy + Delta-G solvation = -4843.684771 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.88254 -43.09629 -41.66612 -40.31538 -39.44809 -38.11903 -37.83827 -35.79953 -34.41507 -33.81879 -33.22342 -31.48266 -30.77656 -30.33711 -28.90760 -26.97176 -26.81821 -24.88634 -24.17991 -24.03233 -22.55562 -22.47608 -21.99646 -21.82140 -21.39460 -20.30878 -19.77287 -18.93579 -18.70288 -18.26938 -18.07559 -17.42405 -17.24574 -16.84841 -16.57609 -16.42698 -16.19629 -16.14500 -15.90929 -15.89876 -15.52716 -15.14310 -14.91796 -14.75646 -14.52760 -14.43852 -14.41294 -14.30830 -14.21181 -14.00860 -13.66203 -13.63826 -13.60615 -13.35575 -13.11347 -12.84830 -12.73077 -12.28464 -12.14785 -12.00282 -11.79919 -11.62270 -11.25495 -10.99690 -10.95613 -10.80525 -10.48113 -10.47073 -10.19208 -10.06596 -9.46748 -9.12147 -5.16328 -0.90261 0.02840 0.51696 1.09918 1.10709 1.30122 1.48830 1.57537 1.83551 1.85158 1.94624 2.02632 2.19925 2.54340 2.90469 3.18589 3.27249 3.34214 3.48205 3.58688 3.63232 3.67094 3.68894 3.72014 3.82144 3.88607 3.89994 3.98665 4.10813 4.11573 4.25793 4.28127 4.34111 4.44512 4.52701 4.58426 4.59431 4.63848 4.67645 4.71399 4.71782 4.78698 4.81779 4.92115 4.95446 4.95998 5.00159 5.10477 5.18133 5.31191 5.34158 5.43718 5.46119 5.82791 5.84933 6.28764 6.42488 6.57636 6.80279 7.11827 7.13744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.034 4.034 3 Si 0.798 3.202 4 C -0.032 4.032 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.006 4.006 8 C 0.022 3.978 9 C -0.107 4.107 10 C -0.045 4.045 11 C -0.176 4.176 12 C 0.555 3.445 13 O -0.566 6.566 14 N -0.708 5.708 15 C 0.131 3.869 16 C -0.101 4.101 17 H 0.133 0.867 18 C -0.137 4.137 19 C 0.103 3.897 20 H 0.149 0.851 21 N -0.444 5.444 22 C -0.047 4.047 23 C -0.067 4.067 24 N -0.544 5.544 25 C 0.172 3.828 26 C -0.137 4.137 27 C 0.159 3.841 28 O -0.496 6.496 29 C -0.162 4.162 30 O -0.198 6.198 31 H 0.414 0.586 32 H 0.130 0.870 33 H -0.311 1.311 34 H -0.298 1.298 35 H 0.178 0.822 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.417 0.583 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.204 0.796 45 H 0.174 0.826 46 H 0.216 0.784 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.408 0.592 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -9.937 -7.554 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.144 4.144 3 Si 0.705 3.295 4 C -0.081 4.081 5 C -0.193 4.193 6 C -0.184 4.184 7 C -0.055 4.055 8 C 0.021 3.979 9 C -0.124 4.124 10 C -0.064 4.064 11 C -0.180 4.180 12 C 0.343 3.657 13 O -0.446 6.446 14 N -0.361 5.361 15 C 0.008 3.992 16 C -0.120 4.120 17 H 0.150 0.850 18 C -0.175 4.175 19 C 0.001 3.999 20 H 0.167 0.833 21 N -0.126 5.126 22 C -0.180 4.180 23 C -0.214 4.214 24 N -0.263 5.263 25 C -0.110 4.110 26 C -0.175 4.175 27 C 0.113 3.887 28 O -0.309 6.309 29 C -0.181 4.181 30 O -0.097 6.097 31 H 0.267 0.733 32 H 0.147 0.853 33 H -0.239 1.239 34 H -0.226 1.226 35 H 0.195 0.805 36 H 0.209 0.791 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.221 0.779 45 H 0.191 0.809 46 H 0.232 0.768 47 H 0.103 0.897 48 H 0.119 0.881 49 H 0.268 0.732 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.292 -8.155 -6.316 10.395 hybrid contribution -0.116 -0.521 0.114 0.546 sum -1.408 -8.676 -6.202 10.757 Atomic orbital electron populations 1.86409 1.15975 1.82502 1.52169 1.23882 0.86549 1.11094 0.92854 0.94475 0.76882 0.74405 0.83701 1.22218 1.00485 0.93792 0.91582 1.21915 1.03483 0.95497 0.98409 1.22330 1.00315 0.98821 0.96952 1.20774 1.05260 0.88216 0.91226 1.18022 0.95462 0.94034 0.90350 1.21103 0.99227 0.99167 0.92927 1.21246 0.93250 0.95184 0.96685 1.20541 1.05415 0.95931 0.96088 1.18160 0.79513 0.84524 0.83551 1.90836 1.51772 1.25685 1.76262 1.45716 1.56967 1.12311 1.21126 1.21345 0.96182 0.97569 0.84116 1.22556 0.96674 0.97723 0.95069 0.84957 1.23434 0.98840 1.00581 0.94690 1.23414 0.98413 1.02094 0.75945 0.83348 1.45770 1.46871 1.11857 1.08103 1.23229 1.08851 1.00167 0.85779 1.22670 1.06919 0.91194 1.00573 1.70260 1.22560 1.23618 1.09871 1.25130 1.02772 0.91159 0.91938 1.23548 0.96829 1.02614 0.94478 1.18483 0.92196 0.85998 0.92036 1.84724 1.45644 1.23720 1.76823 1.21490 1.00349 0.97980 0.98263 1.83957 1.58800 1.39481 1.27491 0.73289 0.85300 1.23911 1.22584 0.80508 0.79094 0.80748 0.80110 0.74440 0.92147 0.92094 0.88791 0.89994 0.77915 0.80910 0.76811 0.89658 0.88074 0.73190 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.26 12.86 -148.98 -1.92 -0.65 16 2 C -0.03 0.05 2.97 71.24 0.21 0.26 16 3 Si 0.80 -0.18 32.11 68.60 2.20 2.02 16 4 C -0.03 -0.17 6.24 24.90 0.16 -0.02 16 5 C -0.17 -0.37 10.78 22.11 0.24 -0.14 16 6 C -0.17 -0.11 10.26 22.40 0.23 0.12 16 7 C -0.01 -0.03 7.02 24.24 0.17 0.14 16 8 C 0.02 0.08 5.87 -20.08 -0.12 -0.04 16 9 C -0.11 0.47 9.48 22.26 0.21 0.68 16 10 C -0.05 0.27 9.47 22.24 0.21 0.48 16 11 C -0.18 -0.41 5.89 -19.97 -0.12 -0.53 16 12 C 0.55 2.37 7.75 86.63 0.67 3.05 16 13 O -0.57 -7.78 15.14 16.90 0.26 -7.53 16 14 N -0.71 3.53 5.50 -466.52 -2.57 0.96 16 15 C 0.13 -0.67 5.51 86.38 0.48 -0.19 16 16 C -0.10 1.21 3.75 -10.27 -0.04 1.17 16 17 H 0.13 -2.17 8.14 -2.38 -0.02 -2.19 16 18 C -0.14 1.27 7.32 31.12 0.23 1.50 16 19 C 0.10 -0.95 4.64 45.52 0.21 -0.74 16 20 H 0.15 -2.01 8.14 -2.39 -0.02 -2.03 16 21 N -0.44 0.62 2.94 -503.80 -1.48 -0.86 16 22 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 23 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 24 N -0.54 -5.89 11.25 -200.31 -2.25 -8.14 16 25 C 0.17 0.65 11.37 180.26 2.05 2.70 16 26 C -0.14 1.52 7.18 31.12 0.22 1.74 16 27 C 0.16 1.16 6.71 22.81 0.15 1.31 16 28 O -0.50 -4.94 11.56 -69.05 -0.80 -5.74 16 29 C -0.16 -1.16 9.65 22.61 0.22 -0.95 16 30 O -0.20 -1.97 8.79 -6.03 -0.05 -2.02 16 31 H 0.41 -5.70 8.74 -74.06 -0.65 -6.34 16 32 H 0.13 -1.04 7.96 -2.39 -0.02 -1.06 16 33 H -0.31 -3.06 7.11 99.48 0.71 -2.35 16 34 H -0.30 -2.13 7.11 99.48 0.71 -1.43 16 35 H 0.18 -0.46 8.06 -2.91 -0.02 -0.49 16 36 H 0.19 -1.39 7.24 -2.91 -0.02 -1.41 16 37 H 0.18 -2.03 6.95 -2.91 -0.02 -2.05 16 38 H 0.18 -2.79 6.37 -2.91 -0.02 -2.81 16 39 H 0.42 -5.29 6.48 -92.70 -0.60 -5.89 16 40 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.06 -0.13 7.84 -2.39 -0.02 -0.15 16 42 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H 0.08 -0.47 7.86 -2.38 -0.02 -0.49 16 44 H 0.20 -1.42 8.06 -2.91 -0.02 -1.45 16 45 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.22 -0.29 7.43 -2.91 -0.02 -0.31 16 47 H 0.08 -0.69 6.67 -2.39 -0.02 -0.71 16 48 H 0.10 -1.39 8.14 -2.38 -0.02 -1.40 16 49 H 0.41 1.17 9.06 -74.06 -0.67 0.50 16 50 H 0.12 1.15 7.90 -2.91 -0.02 1.13 16 Total: 0.00 -41.25 425.10 -0.12 -41.37 By element: Atomic # 1 Polarization: -30.62 SS G_CDS: -0.85 Total: -31.46 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 7.34 Total: 12.05 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -6.30 Total: -8.04 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -2.51 Total: -15.94 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.20 Total: 2.02 kcal Total: -41.25 -0.12 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.693 kcal (2) G-P(sol) polarization free energy of solvation -41.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds