Wall clock time and date at job start Sun Mar 7 2021 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39277 * 121.02950 * 2 1 4 4 C 1.46499 * 134.20282 * 359.97438 * 3 2 1 5 5 C 1.50699 * 126.60064 * 0.02562 * 4 3 2 6 6 O 1.42903 * 109.46646 * 284.99838 * 5 4 3 7 7 Si 1.86298 * 109.47341 * 165.00107 * 5 4 3 8 8 C 1.34186 * 106.80013 * 180.02562 * 4 3 2 9 9 N 1.36945 * 109.95260 * 359.97438 * 8 4 3 10 10 C 1.37151 * 110.11404 * 359.97438 * 9 8 4 11 11 N 1.32819 * 132.96147 * 179.97438 * 10 9 8 12 12 C 1.31313 * 121.88958 * 179.74799 * 11 10 9 13 13 C 1.39748 * 121.02936 * 180.02562 * 2 1 3 14 14 C 1.47669 * 120.45320 * 359.95198 * 13 2 1 15 15 O 1.21572 * 120.00060 * 354.20492 * 14 13 2 16 16 N 1.34782 * 119.99551 * 174.20681 * 14 13 2 17 17 C 1.46500 * 119.99528 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46875 * 179.97438 * 17 16 14 19 19 H 1.08998 * 112.85099 * 316.19934 * 18 17 16 20 20 C 1.53783 * 113.68800 * 87.46489 * 18 17 16 21 21 C 1.54046 * 87.07450 * 139.98970 * 20 18 17 22 22 H 1.08996 * 113.61731 * 89.07335 * 21 20 18 23 23 N 1.46504 * 113.69367 * 220.05464 * 21 20 18 24 24 C 1.36889 * 126.39468 * 217.42671 * 23 21 20 25 25 C 1.34673 * 106.81582 * 179.97438 * 24 23 21 26 26 N 1.34127 * 108.01923 * 359.97438 * 25 24 23 27 27 C 1.30498 * 109.25874 * 359.72931 * 26 25 24 28 28 C 1.53776 * 113.61282 * 184.99843 * 18 17 16 29 29 H 1.08997 * 109.47135 * 263.74510 * 1 2 3 30 30 H 1.09007 * 109.47265 * 23.74351 * 1 2 3 31 31 H 1.08999 * 109.47362 * 143.74269 * 1 2 3 32 32 H 1.09001 * 109.47112 * 44.99830 * 5 4 3 33 33 H 0.96701 * 113.99968 * 299.99617 * 6 5 4 34 34 H 1.48503 * 110.00054 * 179.97438 * 7 5 4 35 35 H 1.48500 * 110.00033 * 301.31869 * 7 5 4 36 36 H 1.08002 * 125.01748 * 180.02562 * 8 4 3 37 37 H 0.97002 * 124.93803 * 180.02562 * 9 8 4 38 38 H 1.07997 * 119.31449 * 180.28408 * 12 11 10 39 39 H 0.97000 * 120.00020 * 359.97438 * 16 14 13 40 40 H 1.08996 * 109.47517 * 59.99662 * 17 16 14 41 41 H 1.08997 * 109.47240 * 299.99912 * 17 16 14 42 42 H 1.09001 * 113.61376 * 254.53808 * 20 18 17 43 43 H 1.08992 * 113.61565 * 25.44440 * 20 18 17 44 44 H 1.07994 * 126.59273 * 0.02562 * 24 23 21 45 45 H 1.07995 * 125.98775 * 179.97438 * 25 24 23 46 46 H 1.08000 * 125.64967 * 180.29701 * 27 26 25 47 47 H 1.09000 * 113.61668 * 334.48791 * 28 18 17 48 48 H 1.08998 * 113.61677 * 105.30677 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1935 0.0000 4 6 1.8515 2.6101 -0.0005 5 6 0.4526 3.1705 -0.0006 6 8 -0.1192 3.0235 -1.3020 7 14 0.5071 4.9765 0.4533 8 6 2.9948 3.3125 -0.0008 9 7 4.0669 2.4604 0.0000 10 6 3.6347 1.1588 0.0015 11 7 4.2720 -0.0066 0.0022 12 6 3.6266 -1.1501 0.0086 13 6 2.2274 -1.1975 -0.0005 14 6 1.5224 -2.4950 0.0000 15 8 0.3119 -2.5291 0.1071 16 7 2.2210 -3.6415 -0.1184 17 6 1.5215 -4.9288 -0.1185 18 6 2.5390 -6.0620 -0.2653 19 1 3.2958 -5.8559 -1.0221 20 6 3.1218 -6.5463 1.0728 21 6 3.0230 -7.9761 0.5080 22 1 3.9118 -8.2925 -0.0378 23 7 2.5735 -8.9669 1.4892 24 6 3.0168 -10.2571 1.6021 25 6 2.3444 -10.8116 2.6288 26 7 1.5137 -9.8851 3.1294 27 6 1.6499 -8.7758 2.4557 28 6 1.8968 -7.4529 -0.3991 29 1 -0.3633 -0.1120 1.0215 30 1 -0.3634 0.9407 -0.4138 31 1 -0.3634 -0.8287 -0.6078 32 1 -0.1549 2.6313 0.7263 33 1 0.3706 3.4787 -2.0005 34 1 -0.8664 5.5412 0.4561 35 1 1.1289 5.1454 1.7913 36 1 3.0598 4.3906 -0.0007 37 1 4.9965 2.7373 0.0004 38 1 4.1869 -2.0734 0.0136 39 1 3.1868 -3.6143 -0.2042 40 1 0.8196 -4.9609 -0.9517 41 1 0.9781 -5.0471 0.8190 42 1 4.1456 -6.2159 1.2482 43 1 2.4663 -6.3672 1.9249 44 1 3.7629 -10.7377 0.9868 45 1 2.4547 -11.8247 2.9863 46 1 1.1112 -7.8579 2.6389 47 1 0.9063 -7.5216 0.0507 48 1 1.9303 -7.8538 -1.4121 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:49:42 Heat of formation + Delta-G solvation = 102.449600 kcal Electronic energy + Delta-G solvation = -32100.456148 eV Core-core repulsion = 27738.796681 eV Total energy + Delta-G solvation = -4361.659467 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.08410 -42.84529 -41.06735 -39.90817 -38.71292 -37.72477 -36.00491 -34.92451 -33.51689 -31.95779 -31.36077 -30.33027 -29.15801 -28.42287 -26.82718 -26.41861 -24.97947 -24.34371 -23.68780 -22.47098 -21.92827 -21.74334 -20.65967 -20.20252 -19.28103 -18.96834 -18.27091 -17.58479 -17.47397 -17.05456 -16.81289 -16.68219 -16.31301 -16.11730 -16.00142 -15.60656 -15.43001 -15.19057 -15.11859 -14.82911 -14.62672 -14.52155 -14.40524 -14.08216 -13.96637 -13.78691 -13.64565 -13.58511 -13.34892 -13.26382 -13.19343 -12.99635 -12.31285 -12.11030 -12.04105 -11.75480 -11.59916 -11.17769 -11.14385 -10.95282 -10.56835 -10.46840 -10.21113 -10.17382 -9.61496 -9.46090 -9.11388 -4.98976 -0.35677 -0.07743 1.10722 1.35299 1.43804 1.66060 1.75551 1.79724 1.86623 2.05694 2.08732 2.20573 2.75543 3.26819 3.33184 3.38289 3.47832 3.59405 3.63404 3.65819 3.66055 3.74359 3.79445 3.83393 3.99720 4.12279 4.15537 4.28918 4.31206 4.33268 4.45882 4.46836 4.58645 4.60596 4.64708 4.65764 4.73111 4.74420 4.76140 4.82706 4.94191 4.97625 4.99578 5.15705 5.21598 5.25736 5.34395 5.41678 5.49471 5.73790 5.83480 6.23762 6.29590 6.46473 6.82832 6.88649 7.14404 7.16225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.058 3.942 3 C -0.167 4.167 4 C -0.208 4.208 5 C -0.049 4.049 6 O -0.558 6.558 7 Si 0.804 3.196 8 C 0.097 3.903 9 N -0.560 5.560 10 C 0.287 3.713 11 N -0.515 5.515 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.568 3.432 15 O -0.569 6.569 16 N -0.710 5.710 17 C 0.133 3.867 18 C -0.102 4.102 19 H 0.131 0.869 20 C -0.138 4.138 21 C 0.103 3.897 22 H 0.148 0.852 23 N -0.444 5.444 24 C -0.047 4.047 25 C -0.067 4.067 26 N -0.544 5.544 27 C 0.172 3.828 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.395 0.605 34 H -0.306 1.306 35 H -0.281 1.281 36 H 0.231 0.769 37 H 0.439 0.561 38 H 0.197 0.803 39 H 0.415 0.585 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.204 0.796 45 H 0.174 0.826 46 H 0.216 0.784 47 H 0.082 0.918 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 5.823 -6.089 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.174 4.174 4 C -0.215 4.215 5 C -0.158 4.158 6 O -0.366 6.366 7 Si 0.709 3.291 8 C -0.030 4.030 9 N -0.167 5.167 10 C 0.054 3.946 11 N -0.228 5.228 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.356 3.644 15 O -0.450 6.450 16 N -0.363 5.363 17 C 0.009 3.991 18 C -0.121 4.121 19 H 0.149 0.851 20 C -0.176 4.176 21 C 0.001 3.999 22 H 0.166 0.834 23 N -0.126 5.126 24 C -0.181 4.181 25 C -0.214 4.214 26 N -0.263 5.263 27 C -0.110 4.110 28 C -0.174 4.174 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.245 0.755 34 H -0.234 1.234 35 H -0.208 1.208 36 H 0.247 0.753 37 H 0.281 0.719 38 H 0.213 0.787 39 H 0.253 0.747 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.220 0.780 45 H 0.191 0.809 46 H 0.232 0.768 47 H 0.101 0.899 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.274 6.167 -4.586 11.292 hybrid contribution -0.035 -0.853 -0.147 0.866 sum 8.239 5.315 -4.733 10.887 Atomic orbital electron populations 1.21082 0.89750 1.04167 1.02764 1.20065 0.96903 0.90426 0.87665 1.19783 0.93388 0.94454 1.09823 1.20805 0.96333 0.90359 1.13977 1.24719 0.89946 1.12451 0.88699 1.86475 1.54581 1.78568 1.16958 0.94075 0.80587 0.72548 0.81904 1.22399 0.83651 0.97372 0.99592 1.41624 1.10708 1.01670 1.62654 1.18781 0.89432 0.86961 0.99471 1.66519 1.40820 0.96484 1.19007 1.22987 0.89543 0.95384 0.90932 1.20529 0.95549 0.93339 1.15430 1.18007 0.86404 0.84136 0.75866 1.90754 1.15275 1.87607 1.51336 1.45714 1.11445 1.04927 1.74178 1.21339 0.94811 0.80969 1.01953 1.22554 0.98318 0.92415 0.98813 0.85109 1.23597 1.03896 0.92448 0.97613 1.23457 1.00030 0.86804 0.89653 0.83449 1.45767 1.30431 1.10896 1.25477 1.23229 1.05461 0.85710 1.03681 1.22672 0.99148 1.00662 0.98887 1.70258 1.24930 1.01539 1.29547 1.25138 0.96073 0.99816 0.89966 1.23413 0.98050 0.94719 1.01170 0.91215 0.89846 0.90012 0.88915 0.75523 1.23399 1.20823 0.75251 0.71930 0.78656 0.74725 0.91803 0.92069 0.88302 0.89621 0.77950 0.80886 0.76780 0.89900 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.46 71.24 0.60 -0.51 16 2 C 0.06 0.45 5.98 -19.25 -0.12 0.33 16 3 C -0.17 -0.88 6.16 -20.19 -0.12 -1.00 16 4 C -0.21 0.12 5.57 -18.63 -0.10 0.02 16 5 C -0.05 0.05 1.88 71.24 0.13 0.18 16 6 O -0.56 0.03 11.67 -148.98 -1.74 -1.70 16 7 Si 0.80 -4.45 30.76 68.60 2.11 -2.34 16 8 C 0.10 -0.70 10.44 82.97 0.87 0.17 16 9 N -0.56 2.52 6.04 -192.25 -1.16 1.36 16 10 C 0.29 0.93 8.42 134.03 1.13 2.06 16 11 N -0.52 -1.82 10.37 -191.75 -1.99 -3.81 16 12 C 0.18 0.06 10.67 85.20 0.91 0.97 16 13 C -0.24 -1.12 5.89 -19.99 -0.12 -1.24 16 14 C 0.57 2.76 7.72 86.73 0.67 3.43 16 15 O -0.57 -7.19 13.49 -3.94 -0.05 -7.24 16 16 N -0.71 2.76 5.51 -466.14 -2.57 0.20 16 17 C 0.13 -0.63 5.51 86.38 0.48 -0.15 16 18 C -0.10 1.13 3.75 -10.27 -0.04 1.09 16 19 H 0.13 -1.98 8.14 -2.39 -0.02 -2.00 16 20 C -0.14 1.37 7.20 31.21 0.22 1.60 16 21 C 0.10 -0.86 4.66 45.61 0.21 -0.65 16 22 H 0.15 -1.85 8.14 -2.39 -0.02 -1.87 16 23 N -0.44 0.32 2.95 -503.33 -1.48 -1.16 16 24 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 25 C -0.07 -0.46 11.87 83.52 0.99 0.53 16 26 N -0.54 -6.14 11.25 -200.31 -2.25 -8.39 16 27 C 0.17 0.75 11.39 180.26 2.05 2.80 16 28 C -0.13 1.18 7.31 31.12 0.23 1.41 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.70 4.79 -2.38 -0.01 0.69 16 31 H 0.08 1.00 5.95 -2.39 -0.01 0.99 16 32 H 0.09 0.27 7.13 -2.39 -0.02 0.25 16 33 H 0.39 -3.53 8.70 -74.06 -0.64 -4.18 16 34 H -0.31 -1.05 7.11 99.48 0.71 -0.34 16 35 H -0.28 0.30 7.11 99.48 0.71 1.00 16 36 H 0.23 -3.95 6.35 -2.91 -0.02 -3.97 16 37 H 0.44 -4.48 8.96 -92.71 -0.83 -5.31 16 38 H 0.20 -1.69 6.43 -2.91 -0.02 -1.71 16 39 H 0.41 -4.37 6.55 -92.71 -0.61 -4.98 16 40 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 -0.11 7.85 -2.39 -0.02 -0.12 16 42 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H 0.09 -0.61 6.68 -2.39 -0.02 -0.63 16 44 H 0.20 -1.29 8.06 -2.91 -0.02 -1.31 16 45 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 46 H 0.22 -0.17 7.42 -2.91 -0.02 -0.19 16 47 H 0.08 -0.45 7.87 -2.39 -0.02 -0.47 16 48 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 Total: 0.00 -35.10 390.36 -1.16 -36.26 By element: Atomic # 1 Polarization: -24.16 SS G_CDS: -0.99 Total: -25.15 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 8.96 Total: 11.98 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -9.45 Total: -11.81 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.79 Total: -8.94 kcal Atomic # 14 Polarization: -4.45 SS G_CDS: 2.11 Total: -2.34 kcal Total: -35.10 -1.16 -36.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.714 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds