Wall clock time and date at job start Sun Mar 7 2021 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.47596 * 2 1 4 4 C 1.50705 * 109.46862 * 119.99755 * 2 1 3 5 5 C 1.38587 * 120.32319 * 64.99793 * 4 2 1 6 6 C 1.38629 * 118.48848 * 180.02562 * 5 4 2 7 7 C 1.39268 * 119.05911 * 359.97438 * 6 5 4 8 8 C 1.48167 * 119.71871 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00621 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99683 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99861 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47160 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.90658 * 316.24842 * 12 11 10 14 14 C 1.53777 * 113.61495 * 87.50067 * 12 11 10 15 15 C 1.53784 * 87.08123 * 139.98517 * 14 12 11 16 16 H 1.08993 * 113.69233 * 89.12778 * 15 14 12 17 17 N 1.46504 * 113.61393 * 220.01956 * 15 14 12 18 18 C 1.36876 * 126.40093 * 217.81400 * 17 15 14 19 19 C 1.34665 * 106.82156 * 180.12098 * 18 17 15 20 20 N 1.34127 * 108.01668 * 359.58498 * 19 18 17 21 21 C 1.30500 * 109.25894 * 0.26753 * 20 19 18 22 22 C 1.53781 * 113.61321 * 185.00103 * 12 11 10 23 23 N 1.32745 * 120.55948 * 0.25313 * 7 6 5 24 24 C 1.31502 * 121.63716 * 359.47694 * 23 7 6 25 25 H 0.96698 * 113.99971 * 300.01043 * 1 2 3 26 26 H 1.09001 * 109.47438 * 239.99589 * 2 1 3 27 27 H 1.48505 * 109.99685 * 299.99342 * 3 2 1 28 28 H 1.48498 * 109.99929 * 61.31343 * 3 2 1 29 29 H 1.07996 * 120.75482 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.46698 * 179.97438 * 6 5 4 31 31 H 0.96997 * 120.00068 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47295 * 60.00084 * 11 10 8 33 33 H 1.09000 * 109.47082 * 300.00171 * 11 10 8 34 34 H 1.08998 * 113.61544 * 25.43556 * 14 12 11 35 35 H 1.09000 * 113.61598 * 254.52871 * 14 12 11 36 36 H 1.08002 * 126.59064 * 0.02562 * 18 17 15 37 37 H 1.08002 * 125.99463 * 179.85418 * 19 18 17 38 38 H 1.07994 * 125.64966 * 180.02562 * 21 20 19 39 39 H 1.08999 * 113.61912 * 105.47165 * 22 12 11 40 40 H 1.08996 * 113.61409 * 334.56108 * 22 12 11 41 41 H 1.07997 * 119.54461 * 180.26303 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6877 -2.0634 1.4058 6 6 2.1668 -2.6785 2.5521 7 6 2.8726 -1.9195 3.4824 8 6 3.3907 -2.5619 4.7129 9 8 3.1995 -3.7462 4.9070 10 7 4.0741 -1.8326 5.6173 11 6 4.5868 -2.4679 6.8338 12 6 5.3178 -1.4266 7.6836 13 1 5.9674 -0.7788 7.0949 14 6 4.3964 -0.6622 8.6486 15 6 5.5276 -0.7649 9.6853 16 1 6.2350 0.0632 9.6451 17 7 5.0552 -1.0441 11.0437 18 6 5.5656 -0.5268 12.2036 19 6 4.8418 -1.0460 13.2136 20 7 3.9088 -1.8511 12.6842 21 6 4.0306 -1.8550 11.3849 22 6 6.0011 -2.0170 8.9283 23 7 3.0804 -0.6244 3.2785 24 6 2.6417 -0.0171 2.1978 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 1.5617 2.4678 -1.2086 28 1 1.5879 2.4586 1.2242 29 1 1.1374 -2.6258 0.6661 30 1 1.9950 -3.7312 2.7213 31 1 4.2271 -0.8874 5.4623 32 1 5.2777 -3.2664 6.5632 33 1 3.7563 -2.8837 7.4042 34 1 3.4989 -1.2153 8.9255 35 1 4.1848 0.3595 8.3332 36 1 6.3913 0.1638 12.2920 37 1 4.9845 -0.8455 14.2652 38 1 3.4138 -2.4136 10.6966 39 1 7.0850 -2.0891 8.8386 40 1 5.5423 -2.9404 9.2816 41 1 2.8336 1.0373 2.0644 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:50:07 Heat of formation + Delta-G solvation = 68.560860 kcal Electronic energy + Delta-G solvation = -24725.632138 eV Core-core repulsion = 20995.456575 eV Total energy + Delta-G solvation = -3730.175563 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.09030 -41.88944 -40.57747 -39.71311 -38.01235 -35.88840 -33.95344 -33.35247 -32.96928 -30.37880 -29.34740 -27.42653 -26.83425 -25.06670 -24.69139 -23.53720 -22.47779 -21.90693 -21.80259 -20.32074 -19.29743 -18.69048 -18.34192 -17.78205 -16.94480 -16.77710 -16.61906 -16.34559 -16.19817 -16.11686 -15.96904 -15.23412 -15.15215 -14.86958 -14.72290 -14.43242 -14.38967 -14.25017 -14.16470 -13.60182 -13.48541 -13.37222 -13.11680 -12.63540 -12.18635 -12.10505 -11.83147 -11.63498 -11.40691 -11.07958 -10.95424 -10.68982 -10.66791 -10.47504 -10.42578 -10.10645 -9.46023 -4.92067 -0.60550 0.07424 1.10807 1.24727 1.53240 1.59530 1.83865 1.97836 1.98688 2.20651 2.65373 2.93165 3.28399 3.33700 3.36667 3.50102 3.62599 3.63999 3.71783 3.78752 3.83077 3.92449 3.99055 4.10934 4.14144 4.28919 4.45042 4.47571 4.59352 4.60189 4.63859 4.69250 4.72256 4.80026 4.88410 4.92850 4.96527 4.99193 5.18291 5.30105 5.38140 5.45987 5.83482 6.25408 6.29385 6.42168 6.60499 7.03163 7.14391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.080 4.080 3 Si 0.769 3.231 4 C -0.140 4.140 5 C -0.053 4.053 6 C -0.118 4.118 7 C 0.064 3.936 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.128 3.872 12 C -0.103 4.103 13 H 0.128 0.872 14 C -0.139 4.139 15 C 0.104 3.896 16 H 0.148 0.852 17 N -0.444 5.444 18 C -0.047 4.047 19 C -0.067 4.067 20 N -0.543 5.543 21 C 0.173 3.827 22 C -0.133 4.133 23 N -0.457 5.457 24 C 0.100 3.900 25 H 0.388 0.612 26 H 0.136 0.864 27 H -0.301 1.301 28 H -0.273 1.273 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.421 0.579 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.204 0.796 37 H 0.174 0.826 38 H 0.216 0.784 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 5.899 -5.135 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.189 4.189 3 Si 0.673 3.327 4 C -0.142 4.142 5 C -0.079 4.079 6 C -0.139 4.139 7 C -0.073 4.073 8 C 0.352 3.648 9 O -0.448 6.448 10 N -0.347 5.347 11 C 0.005 3.995 12 C -0.122 4.122 13 H 0.146 0.854 14 C -0.177 4.177 15 C 0.002 3.998 16 H 0.165 0.835 17 N -0.126 5.126 18 C -0.181 4.181 19 C -0.214 4.214 20 N -0.262 5.262 21 C -0.110 4.110 22 C -0.171 4.171 23 N -0.169 5.169 24 C -0.059 4.059 25 H 0.238 0.762 26 H 0.154 0.846 27 H -0.229 1.229 28 H -0.199 1.199 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.220 0.780 37 H 0.191 0.809 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.074 5.610 -4.515 8.809 hybrid contribution -1.181 -0.101 -0.415 1.256 sum 3.893 5.509 -4.930 8.355 Atomic orbital electron populations 1.86620 1.18024 1.80366 1.50261 1.25238 0.83687 1.12157 0.97822 0.94078 0.89983 0.71515 0.77133 1.21675 0.98823 0.95448 0.98275 1.21742 0.95508 0.94207 0.96410 1.22286 0.95716 1.02303 0.93562 1.21083 0.99552 0.90885 0.95786 1.18095 0.78229 0.85590 0.82931 1.90804 1.59612 1.16497 1.77892 1.45762 1.54290 1.14335 1.20363 1.21451 0.97950 0.95748 0.84383 1.22547 0.97873 0.97266 0.94498 0.85395 1.23549 0.96913 1.03001 0.94210 1.23396 0.99095 1.00846 0.76450 0.83466 1.45770 1.25213 1.33939 1.07688 1.23226 1.04399 1.05450 0.84978 1.22675 0.96877 1.01114 1.00706 1.70260 1.25425 1.22516 1.08039 1.25140 0.93948 0.98926 0.92961 1.23417 1.02769 0.97040 0.93901 1.67519 1.18617 1.08839 1.21887 1.23065 0.93652 1.00958 0.88260 0.76238 0.84633 1.22942 1.19872 0.82250 0.83498 0.74067 0.91275 0.91734 0.89566 0.88697 0.77951 0.80854 0.76751 0.88572 0.89653 0.79690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.29 12.84 -148.98 -1.91 -0.62 16 2 C -0.08 0.49 2.82 71.24 0.20 0.69 16 3 Si 0.77 -5.61 29.90 68.60 2.05 -3.56 16 4 C -0.14 0.63 5.37 -19.69 -0.11 0.53 16 5 C -0.05 0.14 9.83 22.45 0.22 0.36 16 6 C -0.12 -0.13 9.63 22.61 0.22 0.08 16 7 C 0.06 0.15 6.75 41.89 0.28 0.44 16 8 C 0.57 2.67 7.81 86.88 0.68 3.34 16 9 O -0.57 -6.75 16.32 -3.77 -0.06 -6.81 16 10 N -0.70 1.40 5.55 -465.65 -2.58 -1.19 16 11 C 0.13 -0.53 5.51 86.38 0.48 -0.06 16 12 C -0.10 1.05 3.75 -10.27 -0.04 1.01 16 13 H 0.13 -1.74 8.14 -2.39 -0.02 -1.76 16 14 C -0.14 1.25 7.18 31.12 0.22 1.48 16 15 C 0.10 -0.85 4.64 45.52 0.21 -0.64 16 16 H 0.15 -1.80 8.14 -2.39 -0.02 -1.82 16 17 N -0.44 0.34 2.94 -503.79 -1.48 -1.14 16 18 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 19 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 20 N -0.54 -6.00 11.25 -200.32 -2.25 -8.26 16 21 C 0.17 0.71 11.37 180.26 2.05 2.76 16 22 C -0.13 1.17 7.32 31.12 0.23 1.40 16 23 N -0.46 0.32 9.54 -184.91 -1.76 -1.45 16 24 C 0.10 -0.43 9.84 84.83 0.83 0.40 16 25 H 0.39 -3.01 8.70 -74.06 -0.64 -3.66 16 26 H 0.14 -1.11 7.96 -2.39 -0.02 -1.13 16 27 H -0.30 -0.40 7.11 99.48 0.71 0.30 16 28 H -0.27 1.17 7.01 99.48 0.70 1.87 16 29 H 0.16 -0.87 8.06 -2.91 -0.02 -0.89 16 30 H 0.15 0.24 7.64 -2.91 -0.02 0.22 16 31 H 0.42 -2.45 7.80 -92.71 -0.72 -3.17 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.06 -0.12 7.84 -2.39 -0.02 -0.14 16 34 H 0.09 -0.56 6.67 -2.39 -0.02 -0.58 16 35 H 0.09 -0.99 8.14 -2.39 -0.02 -1.00 16 36 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 37 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.22 -0.24 7.43 -2.91 -0.02 -0.26 16 39 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.08 -0.51 7.86 -2.39 -0.02 -0.53 16 41 H 0.19 -1.75 4.86 -2.91 -0.01 -1.77 16 Total: 0.00 -25.14 349.41 -0.83 -25.97 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -0.26 Total: -16.21 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 7.43 Total: 13.27 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -8.08 Total: -12.03 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -1.97 Total: -7.43 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.05 Total: -3.56 kcal Total: -25.14 -0.83 -25.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.531 kcal (2) G-P(sol) polarization free energy of solvation -25.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds