Wall clock time and date at job start Sun Mar 7 2021 07:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37784 * 119.85010 * 2 1 4 4 C 1.39710 * 119.90690 * 180.20964 * 3 2 1 5 5 C 1.47533 * 120.19261 * 179.78713 * 4 3 2 6 6 O 1.21593 * 120.00075 * 179.71802 * 5 4 3 7 7 N 1.34777 * 119.99975 * 359.71935 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27938 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 H 1.08997 * 112.85267 * 45.32803 * 9 8 7 11 11 C 1.53781 * 113.61494 * 176.52844 * 9 8 7 12 12 C 1.53781 * 87.08219 * 139.98040 * 11 9 8 13 13 H 1.08998 * 113.61657 * 89.11652 * 12 11 9 14 14 N 1.46499 * 113.61597 * 219.93301 * 12 11 9 15 15 C 1.36882 * 126.40202 * 239.71198 * 14 12 11 16 16 C 1.34667 * 106.81636 * 179.84026 * 15 14 12 17 17 N 1.34120 * 108.02491 * 0.42497 * 16 15 14 18 18 C 1.30500 * 109.25583 * 359.72848 * 17 16 15 19 19 C 1.53784 * 113.61355 * 274.13660 * 9 8 7 20 20 C 1.40142 * 119.61425 * 359.50625 * 4 3 2 21 21 O 1.35656 * 120.14920 * 180.28045 * 20 4 3 22 22 C 1.38706 * 119.69963 * 0.25565 * 20 4 3 23 23 C 1.50699 * 119.95625 * 180.02562 * 22 20 4 24 24 O 1.42901 * 109.47575 * 75.00009 * 23 22 20 25 25 Si 1.86301 * 109.47052 * 195.00099 * 23 22 20 26 26 C 1.38054 * 120.08510 * 359.97438 * 22 20 4 27 27 H 1.08994 * 109.47756 * 270.28389 * 1 2 3 28 28 H 1.09005 * 109.46568 * 30.28729 * 1 2 3 29 29 H 1.09003 * 109.47264 * 150.28053 * 1 2 3 30 30 H 1.07998 * 120.04871 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 33 33 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 34 34 H 1.09001 * 113.60987 * 254.52402 * 11 9 8 35 35 H 1.09000 * 113.61716 * 25.34727 * 11 9 8 36 36 H 1.07997 * 126.58849 * 359.97438 * 15 14 12 37 37 H 1.08001 * 125.98552 * 180.18644 * 16 15 14 38 38 H 1.08001 * 125.65024 * 180.02562 * 18 17 16 39 39 H 1.09004 * 113.61160 * 334.56145 * 19 9 8 40 40 H 1.08999 * 113.62074 * 105.47017 * 19 9 8 41 41 H 0.96703 * 114.00294 * 89.99599 * 21 20 4 42 42 H 1.09002 * 109.47234 * 315.00416 * 23 22 20 43 43 H 0.96698 * 114.00412 * 180.02562 * 24 23 22 44 44 H 1.48501 * 110.00030 * 299.99588 * 25 23 22 45 45 H 1.48490 * 110.00199 * 61.31986 * 25 23 22 46 46 H 1.08005 * 119.80278 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5899 1.1964 -0.0044 5 6 4.3306 2.4724 -0.0092 6 8 5.5465 2.4695 -0.0079 7 7 3.6594 3.6411 -0.0150 8 6 4.3950 4.9080 -0.0259 9 6 3.4035 6.0732 -0.0376 10 1 2.5906 5.9446 0.6770 11 6 4.0754 7.4546 0.0356 12 6 3.0312 7.9296 -0.9885 13 1 2.1157 8.3090 -0.5347 14 7 3.5762 8.8298 -2.0078 15 6 3.1745 10.1147 -2.2553 16 6 3.9373 10.5735 -3.2659 17 7 4.7753 9.5923 -3.6319 18 6 4.5647 8.5448 -2.8826 19 6 2.9283 6.4636 -1.4472 20 6 4.2837 -0.0212 0.0016 21 8 5.6402 -0.0325 0.0032 22 6 3.5770 -1.2147 0.0066 23 6 4.3171 -2.5274 0.0138 24 8 4.8535 -2.7649 1.3168 25 14 3.1447 -3.9038 -0.4355 26 6 2.1965 -1.2017 0.0061 27 1 -0.3634 0.0051 1.0276 28 1 -0.3633 0.8875 -0.5183 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6512 2.1294 -0.0004 31 1 2.6894 3.6434 -0.0164 32 1 5.0208 4.9725 0.8642 33 1 5.0226 4.9562 -0.9157 34 1 3.9814 7.9346 1.0097 35 1 5.0971 7.4639 -0.3441 36 1 2.3970 10.6571 -1.7380 37 1 3.8811 11.5577 -3.7071 38 1 5.0937 7.6057 -2.9507 39 1 3.6354 6.2018 -2.2344 40 1 1.9097 6.1448 -1.6686 41 1 6.0326 -0.0318 0.8870 42 1 5.1294 -2.4905 -0.7122 43 1 5.3444 -3.5944 1.3950 44 1 2.0327 -3.9647 0.5468 45 1 2.6046 -3.6854 -1.8014 46 1 1.6509 -2.1337 0.0096 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_13422088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:50:36 Heat of formation + Delta-G solvation = 12.581624 kcal Electronic energy + Delta-G solvation = -29301.595689 eV Core-core repulsion = 25160.198785 eV Total energy + Delta-G solvation = -4141.396905 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.10735 -41.83831 -40.47845 -39.61323 -38.15652 -37.59623 -35.80685 -33.70984 -33.26393 -32.85786 -30.37714 -28.98889 -27.65309 -26.87800 -26.81527 -25.40347 -24.07725 -22.50868 -22.02364 -21.80602 -21.49677 -20.21013 -19.65134 -18.76661 -18.42872 -18.11804 -17.67923 -16.95772 -16.87326 -16.54412 -16.17488 -16.08795 -15.90569 -15.34697 -15.18611 -15.15296 -14.96558 -14.74370 -14.58845 -14.44550 -14.36374 -14.29853 -13.79239 -13.62657 -13.38592 -13.17872 -13.12662 -13.06311 -12.68632 -12.53810 -12.16000 -12.06118 -11.83966 -11.78323 -11.64577 -10.99098 -10.96495 -10.49799 -10.40723 -10.32769 -10.11059 -9.63371 -9.47910 -4.98707 -0.49397 -0.06238 1.08537 1.22895 1.56730 1.63228 1.82838 1.87938 2.00809 2.18774 2.42552 3.07680 3.23223 3.25222 3.31258 3.48303 3.55442 3.60585 3.64969 3.79784 3.80832 3.96703 3.97432 4.05069 4.08821 4.24197 4.25497 4.42155 4.42985 4.48791 4.57924 4.61623 4.66800 4.68996 4.69794 4.73128 4.78873 4.83780 4.89672 4.93588 5.04968 5.07577 5.16069 5.25299 5.29041 5.43833 5.51794 5.81685 6.27174 6.38498 6.61352 6.82606 7.08329 7.12524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.058 4.058 4 C -0.176 4.176 5 C 0.556 3.444 6 O -0.562 6.562 7 N -0.709 5.709 8 C 0.132 3.868 9 C -0.102 4.102 10 H 0.132 0.868 11 C -0.135 4.135 12 C 0.104 3.896 13 H 0.149 0.851 14 N -0.444 5.444 15 C -0.046 4.046 16 C -0.067 4.067 17 N -0.543 5.543 18 C 0.172 3.828 19 C -0.138 4.138 20 C 0.164 3.836 21 O -0.488 6.488 22 C -0.125 4.125 23 C -0.081 4.081 24 O -0.562 6.562 25 Si 0.781 3.219 26 C -0.097 4.097 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.170 0.830 31 H 0.415 0.585 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.205 0.795 37 H 0.174 0.826 38 H 0.214 0.786 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.404 0.596 42 H 0.077 0.923 43 H 0.403 0.597 44 H -0.278 1.278 45 H -0.290 1.290 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 -3.337 4.995 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.077 4.077 4 C -0.180 4.180 5 C 0.344 3.656 6 O -0.442 6.442 7 N -0.363 5.363 8 C 0.008 3.992 9 C -0.121 4.121 10 H 0.150 0.850 11 C -0.173 4.173 12 C 0.002 3.998 13 H 0.167 0.833 14 N -0.126 5.126 15 C -0.180 4.180 16 C -0.214 4.214 17 N -0.262 5.262 18 C -0.110 4.110 19 C -0.176 4.176 20 C 0.118 3.882 21 O -0.300 6.300 22 C -0.126 4.126 23 C -0.190 4.190 24 O -0.372 6.372 25 Si 0.685 3.315 26 C -0.115 4.115 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.187 0.813 31 H 0.253 0.747 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.221 0.779 37 H 0.192 0.808 38 H 0.231 0.769 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.255 0.745 44 H -0.205 1.205 45 H -0.217 1.217 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.086 -2.976 3.778 9.408 hybrid contribution -0.163 0.566 0.823 1.012 sum -8.250 -2.410 4.601 9.748 Atomic orbital electron populations 1.20920 0.87913 1.04507 1.03946 1.20129 0.98270 0.91736 0.99612 1.21445 0.91049 0.99643 0.95542 1.20481 0.95054 0.92804 1.09668 1.18188 0.86837 0.84302 0.76319 1.90820 1.14910 1.87923 1.50520 1.45728 1.11077 1.04699 1.74757 1.21350 0.94468 0.81386 1.01953 1.22558 0.98889 0.92299 0.98337 0.85042 1.23413 0.98643 0.95074 1.00213 1.23430 0.99292 0.88971 0.88086 0.83318 1.45765 1.27783 1.11897 1.27167 1.23234 1.05188 0.86542 1.03018 1.22682 0.97976 1.00291 1.00422 1.70259 1.26542 1.01664 1.27762 1.25118 0.94270 1.00560 0.91091 1.23581 1.04201 0.92615 0.97240 1.18481 0.83883 0.90625 0.95260 1.84635 1.14902 1.96015 1.34438 1.19976 0.93934 0.94517 1.04157 1.24844 1.04632 1.00336 0.89194 1.86392 1.75061 1.47297 1.28425 0.94018 0.77532 0.83829 0.76093 1.21237 0.92820 0.99172 0.98266 0.89540 0.88831 0.91194 0.81291 0.74687 0.91763 0.92347 0.88614 0.89939 0.77865 0.80829 0.76920 0.89796 0.88220 0.73604 0.90475 0.74528 1.20479 1.21658 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.78 10.00 71.24 0.71 1.49 16 2 C -0.10 0.08 5.87 -19.90 -0.12 -0.04 16 3 C -0.06 0.12 9.18 22.52 0.21 0.33 16 4 C -0.18 -0.84 5.89 -20.01 -0.12 -0.96 16 5 C 0.56 3.38 7.76 86.69 0.67 4.05 16 6 O -0.56 -8.33 15.16 16.91 0.26 -8.08 16 7 N -0.71 2.22 5.51 -466.28 -2.57 -0.35 16 8 C 0.13 -0.53 5.50 86.38 0.47 -0.05 16 9 C -0.10 1.12 3.75 -10.27 -0.04 1.08 16 10 H 0.13 -2.01 8.14 -2.39 -0.02 -2.03 16 11 C -0.13 1.18 7.32 31.12 0.23 1.41 16 12 C 0.10 -0.89 4.64 45.58 0.21 -0.68 16 13 H 0.15 -1.93 8.14 -2.39 -0.02 -1.95 16 14 N -0.44 0.36 2.95 -503.49 -1.48 -1.12 16 15 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 16 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 17 N -0.54 -6.14 11.25 -200.31 -2.25 -8.40 16 18 C 0.17 0.76 11.38 180.26 2.05 2.82 16 19 C -0.14 1.36 7.20 31.18 0.22 1.59 16 20 C 0.16 1.36 6.69 22.84 0.15 1.52 16 21 O -0.49 -5.00 10.91 -68.80 -0.75 -5.75 16 22 C -0.13 -0.75 5.30 -19.80 -0.10 -0.86 16 23 C -0.08 -0.14 2.37 71.24 0.17 0.03 16 24 O -0.56 -0.29 12.86 -148.98 -1.92 -2.21 16 25 Si 0.78 -1.73 30.19 68.60 2.07 0.34 16 26 C -0.10 -0.32 8.30 22.30 0.19 -0.14 16 27 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H 0.09 -0.98 8.08 -2.38 -0.02 -1.00 16 29 H 0.07 -0.43 8.08 -2.39 -0.02 -0.45 16 30 H 0.17 -1.81 6.40 -2.91 -0.02 -1.83 16 31 H 0.41 -4.20 6.50 -92.71 -0.60 -4.81 16 32 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.06 -0.03 7.87 -2.39 -0.02 -0.05 16 34 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.08 -0.43 7.87 -2.39 -0.02 -0.45 16 36 H 0.20 -1.37 8.06 -2.91 -0.02 -1.39 16 37 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.21 -0.09 7.45 -2.91 -0.02 -0.11 16 39 H 0.08 -0.56 6.72 -2.38 -0.02 -0.57 16 40 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.40 2.18 9.06 -74.06 -0.67 1.51 16 42 H 0.08 0.12 7.83 -2.39 -0.02 0.10 16 43 H 0.40 -3.89 8.74 -74.06 -0.65 -4.54 16 44 H -0.28 -0.64 6.74 99.48 0.67 0.03 16 45 H -0.29 -1.04 7.11 99.48 0.71 -0.33 16 46 H 0.13 0.26 4.87 -2.91 -0.01 0.25 16 Total: 0.00 -31.91 381.73 -0.65 -32.56 By element: Atomic # 1 Polarization: -19.19 SS G_CDS: -0.87 Total: -20.06 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.87 Total: 13.07 kcal Atomic # 7 Polarization: -3.57 SS G_CDS: -6.30 Total: -9.87 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -2.41 Total: -16.03 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: 2.07 Total: 0.34 kcal Total: -31.91 -0.65 -32.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_13422088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.141 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds