Wall clock time and date at job start Sun Mar 7 2021 07:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39203 * 119.93121 * 240.00456 * 4 2 1 6 6 C 1.50697 * 119.96538 * 359.97438 * 5 4 2 7 7 O 1.42898 * 109.46900 * 75.00138 * 6 5 4 8 8 Si 1.86299 * 109.47352 * 195.00366 * 6 5 4 9 9 C 1.37629 * 120.06996 * 180.02562 * 5 4 2 10 10 C 1.39773 * 119.92914 * 359.97387 * 9 5 4 11 11 C 1.47522 * 120.06904 * 180.02562 * 10 9 5 12 12 O 1.21600 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00210 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00114 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47183 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.84984 * 45.33358 * 15 14 13 17 17 C 1.53782 * 113.61419 * 176.53326 * 15 14 13 18 18 C 1.53782 * 87.08264 * 139.98092 * 17 15 14 19 19 H 1.09007 * 113.61395 * 89.11321 * 18 17 15 20 20 N 1.46498 * 113.61921 * 219.93609 * 18 17 15 21 21 C 1.36880 * 126.39625 * 239.72020 * 20 18 17 22 22 C 1.34678 * 106.81665 * 179.83801 * 21 20 18 23 23 N 1.34124 * 108.01702 * 0.41703 * 22 21 20 24 24 C 1.30505 * 109.26153 * 359.73302 * 23 22 21 25 25 C 1.53782 * 113.61342 * 274.13947 * 15 14 13 26 26 C 1.39819 * 119.86693 * 359.97438 * 10 9 5 27 27 C 1.37590 * 119.92402 * 359.75090 * 26 10 9 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 32 32 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 33 33 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 34 34 H 1.09006 * 109.47281 * 315.00631 * 6 5 4 35 35 H 0.96693 * 114.00703 * 300.00214 * 7 6 5 36 36 H 1.48500 * 109.99905 * 59.99850 * 8 6 5 37 37 H 1.48501 * 110.00085 * 181.31865 * 8 6 5 38 38 H 1.08002 * 120.03811 * 179.97438 * 9 5 4 39 39 H 0.96996 * 119.99978 * 0.02562 * 13 11 10 40 40 H 1.08998 * 109.47126 * 300.00934 * 14 13 11 41 41 H 1.09005 * 109.46638 * 60.00284 * 14 13 11 42 42 H 1.09005 * 113.61440 * 254.53024 * 17 15 14 43 43 H 1.09001 * 113.61611 * 25.43430 * 17 15 14 44 44 H 1.08002 * 126.59469 * 359.96739 * 21 20 18 45 45 H 1.08000 * 125.99006 * 180.11561 * 22 21 20 46 46 H 1.07999 * 125.65409 * 179.97438 * 24 23 22 47 47 H 1.08997 * 113.61960 * 334.56946 * 25 15 14 48 48 H 1.09003 * 113.61094 * 105.47603 * 25 15 14 49 49 H 1.07995 * 120.03704 * 179.97438 * 26 10 9 50 50 H 1.08002 * 119.96190 * 180.24921 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1173 -2.2448 0.5578 7 8 1.9822 -2.8746 1.1552 8 14 4.5471 -3.4388 0.5301 9 6 3.2744 -2.5525 -1.9156 10 6 2.9607 -2.1696 -3.2228 11 6 3.4893 -2.9388 -4.3652 12 8 4.1983 -3.9073 -4.1703 13 7 3.1856 -2.5688 -5.6252 14 6 3.7110 -3.3323 -6.7597 15 6 3.2204 -2.7063 -8.0667 16 1 3.3135 -1.6204 -8.0770 17 6 3.7863 -3.3851 -9.3253 18 6 2.3893 -3.2201 -9.9467 19 1 2.2539 -2.2744 -10.4716 20 7 1.9580 -4.3760 -10.7366 21 6 1.6308 -4.3750 -12.0657 22 6 1.2967 -5.6399 -12.3857 23 7 1.4079 -6.3907 -11.2799 24 6 1.8036 -5.6404 -10.2881 25 6 1.8367 -3.2103 -8.5097 26 6 2.1440 -1.0568 -3.4454 27 6 1.6475 -0.3451 -2.3776 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.5899 1.9163 0.8525 32 1 3.0829 1.3431 0.0709 33 1 1.7045 1.8723 -0.9233 34 1 3.3911 -1.3635 1.1380 35 1 1.1988 -2.3099 1.2031 36 1 5.7339 -2.7957 -0.0890 37 1 4.8698 -3.8770 1.9118 38 1 3.9046 -3.4119 -1.7405 39 1 2.6198 -1.7965 -5.7807 40 1 4.8006 -3.3154 -6.7356 41 1 3.3622 -4.3631 -6.6966 42 1 4.5587 -2.8016 -9.8262 43 1 4.0744 -4.4246 -9.1686 44 1 1.6408 -3.5240 -12.7306 45 1 0.9883 -5.9875 -13.3606 46 1 1.9781 -5.9751 -9.2762 47 1 1.5908 -4.2018 -8.1297 48 1 1.0376 -2.4857 -8.3533 49 1 1.9003 -0.7583 -4.4543 50 1 1.0134 0.5121 -2.5488 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:50:40 Heat of formation + Delta-G solvation = 71.591657 kcal Electronic energy + Delta-G solvation = -31117.366071 eV Core-core repulsion = 26920.709077 eV Total energy + Delta-G solvation = -4196.656995 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.07295 -41.73219 -40.65514 -39.75067 -37.71075 -37.30860 -35.84716 -33.55545 -32.78398 -31.45403 -30.33576 -28.91380 -28.58665 -26.93567 -26.83445 -26.01365 -24.42564 -23.21965 -22.84495 -22.46145 -21.84980 -21.16468 -20.18185 -19.20662 -18.46796 -17.95676 -17.72396 -17.38038 -16.83525 -16.51652 -16.38991 -16.15206 -16.00963 -15.94466 -15.38990 -15.17945 -15.15489 -15.07662 -14.80267 -14.56129 -14.42702 -14.39091 -14.18228 -13.93650 -13.58735 -13.52139 -13.36145 -13.14745 -13.05262 -12.96133 -12.72775 -12.63768 -12.21562 -12.11136 -11.78417 -11.61033 -11.41145 -11.27798 -11.01558 -10.93713 -10.46177 -10.24271 -10.09005 -9.78574 -9.61533 -9.44944 -4.93462 -0.40143 0.15337 1.11811 1.31875 1.52859 1.67596 1.85280 1.87201 2.07132 2.21884 2.63709 2.72732 3.28723 3.36933 3.51102 3.62843 3.64925 3.70488 3.73222 3.84650 3.90920 3.99760 4.03114 4.10850 4.15246 4.19041 4.30755 4.35018 4.39331 4.44573 4.47261 4.57598 4.60982 4.65096 4.66491 4.71175 4.74416 4.77254 4.83755 4.92943 4.94554 4.97892 4.98137 5.02689 5.13917 5.20540 5.21543 5.33618 5.47545 5.53779 5.76225 5.84471 6.20116 6.30892 6.45102 6.63625 7.13171 7.15788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.529 5.529 3 C 0.026 3.974 4 C 0.125 3.875 5 C -0.113 4.113 6 C -0.057 4.057 7 O -0.544 6.544 8 Si 0.771 3.229 9 C -0.061 4.061 10 C -0.146 4.146 11 C 0.555 3.445 12 O -0.576 6.576 13 N -0.708 5.708 14 C 0.130 3.870 15 C -0.102 4.102 16 H 0.130 0.870 17 C -0.135 4.135 18 C 0.103 3.897 19 H 0.147 0.853 20 N -0.444 5.444 21 C -0.047 4.047 22 C -0.067 4.067 23 N -0.544 5.544 24 C 0.174 3.826 25 C -0.137 4.137 26 C -0.057 4.057 27 C -0.152 4.152 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.374 0.626 36 H -0.274 1.274 37 H -0.287 1.287 38 H 0.136 0.864 39 H 0.416 0.584 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.203 0.797 45 H 0.173 0.827 46 H 0.217 0.783 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.164 0.836 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 11.126 -2.584 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.250 5.250 3 C -0.120 4.120 4 C 0.030 3.970 5 C -0.115 4.115 6 C -0.167 4.167 7 O -0.351 6.351 8 Si 0.675 3.325 9 C -0.080 4.080 10 C -0.149 4.149 11 C 0.344 3.656 12 O -0.456 6.456 13 N -0.360 5.360 14 C 0.006 3.994 15 C -0.121 4.121 16 H 0.148 0.852 17 C -0.174 4.174 18 C 0.001 3.999 19 H 0.165 0.835 20 N -0.126 5.126 21 C -0.181 4.181 22 C -0.214 4.214 23 N -0.263 5.263 24 C -0.109 4.109 25 C -0.175 4.175 26 C -0.076 4.076 27 C -0.172 4.172 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.223 0.777 36 H -0.200 1.200 37 H -0.215 1.215 38 H 0.153 0.847 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.220 0.780 45 H 0.191 0.809 46 H 0.233 0.767 47 H 0.105 0.895 48 H 0.117 0.883 49 H 0.182 0.818 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.893 8.871 -1.603 9.211 hybrid contribution -0.795 2.599 -0.362 2.742 sum -2.688 11.469 -1.965 11.943 Atomic orbital electron populations 1.22590 0.83956 1.03358 1.02411 1.59436 1.09949 1.15221 1.40427 1.22511 1.00651 0.86464 1.02370 1.18971 0.94856 0.93087 0.90057 1.20178 0.99577 0.95901 0.95800 1.25125 0.97498 1.03834 0.90231 1.86691 1.22689 1.43394 1.82360 0.92262 0.73105 0.86258 0.80923 1.21080 0.97323 0.98079 0.91510 1.19893 1.03213 0.99002 0.92814 1.18367 0.79836 0.83571 0.83868 1.90811 1.39440 1.29395 1.86003 1.45724 1.52564 1.33258 1.04503 1.21372 0.98921 0.95268 0.83814 1.22548 0.95659 1.02107 0.91756 0.85189 1.23421 0.96138 1.02417 0.95443 1.23442 0.96568 0.88276 0.91662 0.83533 1.45765 1.48424 1.09464 1.08954 1.23218 1.07724 1.01135 0.86023 1.22672 1.08742 0.91399 0.98588 1.70260 1.20353 1.35018 1.00656 1.25155 1.04090 0.80874 1.00770 1.23578 0.97994 1.03470 0.92453 1.21466 0.93329 0.91995 1.00836 1.21831 1.01663 1.01604 0.92111 0.90894 0.93721 0.89474 0.89507 0.91961 0.93633 0.90319 0.77667 1.19954 1.21451 0.84712 0.74557 0.91775 0.91900 0.88818 0.89828 0.77997 0.80937 0.76685 0.89544 0.88252 0.81832 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.16 9.20 127.69 1.17 1.02 16 2 N -0.53 1.86 3.67 -745.08 -2.73 -0.87 16 3 C 0.03 -0.14 9.38 127.69 1.20 1.05 16 4 C 0.12 -0.19 4.66 38.47 0.18 -0.01 16 5 C -0.11 -0.27 5.28 -19.78 -0.10 -0.37 16 6 C -0.06 -0.22 2.29 71.24 0.16 -0.06 16 7 O -0.54 -2.62 12.65 -148.98 -1.89 -4.51 16 8 Si 0.77 4.11 30.17 68.60 2.07 6.18 16 9 C -0.06 -0.22 8.19 22.50 0.18 -0.04 16 10 C -0.15 -0.04 5.88 -20.08 -0.12 -0.16 16 11 C 0.56 1.38 7.76 86.69 0.67 2.06 16 12 O -0.58 -6.64 16.34 -4.03 -0.07 -6.70 16 13 N -0.71 4.24 5.51 -466.27 -2.57 1.67 16 14 C 0.13 -0.81 5.50 86.38 0.47 -0.33 16 15 C -0.10 1.28 3.75 -10.27 -0.04 1.24 16 16 H 0.13 -2.17 8.14 -2.39 -0.02 -2.19 16 17 C -0.14 1.35 7.32 31.12 0.23 1.58 16 18 C 0.10 -0.99 4.64 45.58 0.21 -0.78 16 19 H 0.15 -2.01 8.14 -2.38 -0.02 -2.03 16 20 N -0.44 0.80 2.95 -503.47 -1.48 -0.69 16 21 C -0.05 0.00 11.58 83.09 0.96 0.97 16 22 C -0.07 -0.41 11.87 83.53 0.99 0.58 16 23 N -0.54 -5.66 11.25 -200.30 -2.25 -7.91 16 24 C 0.17 0.57 11.38 180.26 2.05 2.62 16 25 C -0.14 1.58 7.20 31.18 0.22 1.80 16 26 C -0.06 0.36 9.53 22.50 0.21 0.58 16 27 C -0.15 0.85 8.53 22.36 0.19 1.04 16 28 H 0.07 -0.46 7.84 -2.39 -0.02 -0.48 16 29 H 0.04 -0.38 7.08 -2.39 -0.02 -0.40 16 30 H 0.09 -0.73 8.12 -2.38 -0.02 -0.74 16 31 H 0.09 -0.62 8.12 -2.38 -0.02 -0.64 16 32 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.05 -0.34 7.33 -2.39 -0.02 -0.36 16 34 H 0.08 0.29 7.78 -2.38 -0.02 0.28 16 35 H 0.37 0.12 8.06 -74.06 -0.60 -0.48 16 36 H -0.27 -2.39 7.11 99.48 0.71 -1.68 16 37 H -0.29 -3.14 7.11 99.48 0.71 -2.43 16 38 H 0.14 0.67 4.70 -2.91 -0.01 0.66 16 39 H 0.42 -5.41 6.49 -92.71 -0.60 -6.01 16 40 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.06 -0.20 7.88 -2.38 -0.02 -0.22 16 42 H 0.09 -1.03 8.14 -2.38 -0.02 -1.05 16 43 H 0.08 -0.55 7.86 -2.39 -0.02 -0.57 16 44 H 0.20 -1.45 8.06 -2.91 -0.02 -1.48 16 45 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 46 H 0.22 -0.43 7.45 -2.91 -0.02 -0.46 16 47 H 0.09 -0.75 6.72 -2.39 -0.02 -0.77 16 48 H 0.10 -1.38 8.14 -2.39 -0.02 -1.40 16 49 H 0.16 -2.34 6.39 -2.91 -0.02 -2.36 16 50 H 0.15 -1.50 6.99 -2.91 -0.02 -1.53 16 Total: 0.00 -26.08 404.45 -0.24 -26.32 By element: Atomic # 1 Polarization: -26.09 SS G_CDS: -0.19 Total: -26.28 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 8.86 Total: 12.78 kcal Atomic # 7 Polarization: 1.23 SS G_CDS: -9.04 Total: -7.80 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.95 Total: -11.21 kcal Atomic # 14 Polarization: 4.11 SS G_CDS: 2.07 Total: 6.18 kcal Total: -26.08 -0.24 -26.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.913 kcal (2) G-P(sol) polarization free energy of solvation -26.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds