Wall clock time and date at job start Sun Mar 7 2021 07:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47224 * 120.00225 * 2 1 3 5 5 C 1.34169 * 125.43828 * 65.00218 * 4 2 1 6 6 C 1.47019 * 105.95888 * 180.02562 * 5 4 2 7 7 C 1.47376 * 127.19695 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00066 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99874 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.85254 * 43.80385 * 11 10 9 13 13 C 1.53781 * 113.61399 * 174.99933 * 11 10 9 14 14 C 1.53785 * 87.08078 * 139.97945 * 13 11 10 15 15 H 1.09002 * 113.61641 * 89.19843 * 14 13 11 16 16 N 1.46499 * 113.61514 * 220.01923 * 14 13 11 17 17 C 1.36879 * 126.39876 * 239.99947 * 16 14 13 18 18 C 1.34664 * 106.81820 * 179.97438 * 17 16 14 19 19 N 1.34123 * 108.02377 * 0.02562 * 18 17 16 20 20 C 1.30505 * 109.25605 * 359.72324 * 19 18 17 21 21 C 1.53785 * 113.61053 * 272.49703 * 11 10 9 22 22 C 1.36421 * 105.60816 * 0.25977 * 6 5 4 23 23 O 1.33648 * 108.40006 * 359.57624 * 22 6 5 24 24 H 0.96696 * 114.00493 * 60.00002 * 1 2 3 25 25 H 1.08998 * 109.47022 * 240.00351 * 2 1 3 26 26 H 1.48505 * 109.99832 * 60.00192 * 3 2 1 27 27 H 1.48502 * 109.99814 * 181.31864 * 3 2 1 28 28 H 1.08010 * 127.02344 * 0.02562 * 5 4 2 29 29 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 31 31 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 32 32 H 1.08996 * 113.61569 * 254.53055 * 13 11 10 33 33 H 1.09002 * 113.61354 * 25.43545 * 13 11 10 34 34 H 1.07998 * 126.59068 * 0.03638 * 17 16 14 35 35 H 1.08007 * 125.99029 * 180.02562 * 18 17 16 36 36 H 1.07996 * 125.65237 * 180.29103 * 20 19 18 37 37 H 1.08995 * 113.61917 * 334.56530 * 21 11 10 38 38 H 1.08995 * 113.61487 * 105.47453 * 21 11 10 39 39 H 1.08004 * 125.79768 * 179.73965 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7552 -2.0122 1.5036 6 6 2.4120 -2.2461 2.7979 7 6 2.5002 -3.5192 3.5350 8 8 1.9933 -4.5245 3.0752 9 7 3.1426 -3.5694 4.7188 10 6 3.2298 -4.8348 5.4519 11 6 4.0039 -4.6179 6.7536 12 1 3.7078 -3.7080 7.2756 13 6 4.0481 -5.8605 7.6585 14 6 5.5116 -5.4942 7.9569 15 1 5.6292 -4.8247 8.8090 16 7 6.4062 -6.6529 8.0160 17 6 7.1575 -7.0449 9.0910 18 6 7.8272 -8.1512 8.7155 19 7 7.4945 -8.4269 7.4458 20 6 6.6394 -7.5368 7.0220 21 6 5.5260 -4.7736 6.5983 22 6 2.9182 -1.0372 3.1765 23 8 2.6260 -0.1419 2.2282 24 1 -0.3934 0.4417 -0.7650 25 1 1.7923 -0.5138 -0.8900 26 1 1.5614 2.4679 1.2086 27 1 3.5345 1.7704 -0.0321 28 1 1.2367 -2.7397 0.8965 29 1 3.5473 -2.7677 5.0855 30 1 2.2258 -5.1915 5.6818 31 1 3.7468 -5.5742 4.8402 32 1 3.3946 -5.7909 8.5280 33 1 3.9349 -6.7995 7.1166 34 1 7.2034 -6.5607 10.0552 35 1 8.5123 -8.7174 9.3293 36 1 6.1939 -7.5101 6.0386 37 1 5.8167 -5.4155 5.7667 38 1 6.0655 -3.8267 6.6121 39 1 3.4648 -0.8381 4.0865 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17567772_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:50:53 Heat of formation + Delta-G solvation = 50.839462 kcal Electronic energy + Delta-G solvation = -23516.741152 eV Core-core repulsion = 19816.304610 eV Total energy + Delta-G solvation = -3700.436542 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.79725 -43.11715 -40.86921 -39.82968 -38.00649 -35.82116 -34.10172 -33.44250 -32.07794 -30.33940 -29.13925 -27.20498 -26.68263 -25.32666 -23.96942 -22.53887 -22.26316 -21.92685 -21.04398 -20.26789 -19.19458 -18.77104 -18.46901 -17.36658 -17.29766 -17.09583 -16.85986 -16.18064 -16.11748 -15.96036 -15.81694 -15.21449 -14.94214 -14.69606 -14.47314 -14.43451 -14.20940 -14.16142 -13.92664 -13.77763 -13.58168 -13.28605 -12.76800 -12.45706 -12.13644 -12.07026 -11.92966 -11.12001 -10.93329 -10.86170 -10.59630 -10.50083 -10.25471 -9.86082 -9.42287 -5.16904 0.14482 0.82155 1.05998 1.09585 1.49014 1.59870 1.73245 1.92910 1.94861 2.28451 2.31304 2.95165 3.03786 3.16401 3.29226 3.32778 3.46901 3.52898 3.69379 3.78308 3.81768 3.92733 3.96344 4.13169 4.21548 4.30032 4.31196 4.37956 4.49115 4.52861 4.55948 4.62842 4.64482 4.71762 4.80434 4.92439 5.15233 5.23401 5.35623 5.77433 5.84653 6.24389 6.30635 6.40323 7.10736 7.19514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.037 4.037 3 Si 0.712 3.288 4 C -0.015 4.015 5 C -0.117 4.117 6 C -0.235 4.235 7 C 0.589 3.411 8 O -0.528 6.528 9 N -0.728 5.728 10 C 0.132 3.868 11 C -0.121 4.121 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.108 3.892 15 H 0.125 0.875 16 N -0.450 5.450 17 C -0.057 4.057 18 C -0.030 4.030 19 N -0.493 5.493 20 C 0.181 3.819 21 C -0.141 4.141 22 C 0.030 3.970 23 O -0.173 6.173 24 H 0.391 0.609 25 H 0.096 0.904 26 H -0.249 1.249 27 H -0.253 1.253 28 H 0.165 0.835 29 H 0.398 0.602 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.200 0.800 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 7.441 0.009 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.146 4.146 3 Si 0.611 3.389 4 C -0.063 4.063 5 C -0.137 4.137 6 C -0.240 4.240 7 C 0.376 3.624 8 O -0.405 6.405 9 N -0.381 5.381 10 C 0.009 3.991 11 C -0.140 4.140 12 H 0.124 0.876 13 C -0.174 4.174 14 C 0.005 3.995 15 H 0.143 0.857 16 N -0.133 5.133 17 C -0.190 4.190 18 C -0.178 4.178 19 N -0.211 5.211 20 C -0.101 4.101 21 C -0.179 4.179 22 C -0.040 4.040 23 O -0.070 6.070 24 H 0.240 0.760 25 H 0.114 0.886 26 H -0.174 1.174 27 H -0.177 1.177 28 H 0.182 0.818 29 H 0.232 0.768 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.217 0.783 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.063 6.720 0.187 6.723 hybrid contribution -0.064 0.319 1.079 1.127 sum -0.127 7.039 1.266 7.153 Atomic orbital electron populations 1.86471 1.16302 1.82048 1.50255 1.23829 0.86247 1.11824 0.92723 0.95085 0.80817 0.76045 0.86932 1.21181 1.01270 0.92205 0.91617 1.22514 1.00553 0.95306 0.95317 1.21505 1.09094 0.94220 0.99171 1.17217 0.77885 0.87070 0.80199 1.90834 1.46294 1.35619 1.67717 1.45783 1.58004 1.12700 1.21595 1.21349 1.01097 0.85789 0.90852 1.22644 0.95189 0.99941 0.96234 0.87551 1.23446 0.94905 0.98678 1.00358 1.23053 0.89394 0.86659 1.00423 0.85720 1.45580 1.33680 1.22094 1.11910 1.22783 1.00687 1.01469 0.94054 1.22375 1.04149 0.97902 0.93329 1.70344 1.13802 1.25312 1.11639 1.24866 1.00375 0.88970 0.95852 1.23569 0.96108 1.01733 0.96447 1.24456 0.99877 0.86813 0.92860 1.83703 1.57689 1.39222 1.26353 0.75952 0.88608 1.17357 1.17727 0.81778 0.76761 0.90577 0.90739 0.89524 0.88436 0.80936 0.81308 0.78300 0.88509 0.89759 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.34 12.86 -35.23 -0.45 -0.11 16 2 C -0.04 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.71 -1.30 32.09 -169.99 -5.46 -6.76 16 4 C -0.01 -0.03 6.22 -35.74 -0.22 -0.25 16 5 C -0.12 -0.35 10.90 -37.46 -0.41 -0.75 16 6 C -0.24 -0.44 6.31 -103.28 -0.65 -1.09 16 7 C 0.59 1.47 7.81 -12.54 -0.10 1.37 16 8 O -0.53 -3.58 16.98 5.26 0.09 -3.49 16 9 N -0.73 1.23 5.55 -61.39 -0.34 0.89 16 10 C 0.13 -0.29 5.51 -4.04 -0.02 -0.32 16 11 C -0.12 0.58 3.75 -89.81 -0.34 0.25 16 12 H 0.11 -0.65 8.14 -51.93 -0.42 -1.07 16 13 C -0.14 0.53 7.32 -25.92 -0.19 0.34 16 14 C 0.11 -0.38 4.64 -67.11 -0.31 -0.69 16 15 H 0.12 -0.60 8.14 -51.93 -0.42 -1.02 16 16 N -0.45 0.11 2.94 -110.59 -0.33 -0.22 16 17 C -0.06 -0.03 11.58 -16.56 -0.19 -0.22 16 18 C -0.03 -0.08 11.87 -17.82 -0.21 -0.29 16 19 N -0.49 -2.32 11.25 -14.66 -0.16 -2.49 16 20 C 0.18 0.29 11.36 -90.37 -1.03 -0.74 16 21 C -0.14 0.61 7.19 -25.91 -0.19 0.43 16 22 C 0.03 -0.02 11.61 30.08 0.35 0.33 16 23 O -0.17 -0.32 8.90 7.67 0.07 -0.25 16 24 H 0.39 -2.41 8.74 45.56 0.40 -2.01 16 25 H 0.10 -0.30 7.96 -51.93 -0.41 -0.71 16 26 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 27 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 28 H 0.16 0.46 8.06 -52.48 -0.42 0.04 16 29 H 0.40 -1.94 7.44 -40.82 -0.30 -2.24 16 30 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 -0.09 7.85 -51.93 -0.41 -0.50 16 32 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 33 H 0.10 -0.29 7.85 -51.93 -0.41 -0.70 16 34 H 0.17 -0.40 8.06 -52.49 -0.42 -0.83 16 35 H 0.17 0.15 8.06 -52.48 -0.42 -0.27 16 36 H 0.20 -0.23 7.45 -52.49 -0.39 -0.62 16 37 H 0.10 -0.34 6.69 -51.93 -0.35 -0.69 16 38 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 39 H 0.21 -1.20 7.47 -52.48 -0.39 -1.59 16 LS Contribution 340.17 15.07 5.13 5.13 Total: 0.00 -13.32 340.17 -9.70 -23.02 By element: Atomic # 1 Polarization: -9.38 SS G_CDS: -4.84 Total: -14.23 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.40 Total: -1.50 kcal Atomic # 7 Polarization: -0.99 SS G_CDS: -0.83 Total: -1.82 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.30 Total: -3.85 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.46 Total: -6.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -13.32 -9.70 -23.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.864 kcal (2) G-P(sol) polarization free energy of solvation -13.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds