Wall clock time and date at job start Sun Mar 7 2021 07:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47267 * 2 1 4 4 C 1.50706 * 109.46938 * 240.00482 * 2 1 3 5 5 C 1.38710 * 120.02413 * 284.71930 * 4 2 1 6 6 O 1.35903 * 120.05656 * 0.02562 * 5 4 2 7 7 C 1.42904 * 116.99921 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46873 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99802 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00034 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47377 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.84635 * 43.80155 * 12 11 10 14 14 C 1.53775 * 113.61577 * 175.00246 * 12 11 10 15 15 C 1.53782 * 87.08018 * 139.98098 * 14 12 11 16 16 H 1.08999 * 113.61318 * 89.11813 * 15 14 12 17 17 N 1.46502 * 113.61388 * 220.01947 * 15 14 12 18 18 C 1.36884 * 126.39369 * 239.71620 * 17 15 14 19 19 C 1.34673 * 106.81392 * 179.84316 * 18 17 15 20 20 N 1.34130 * 108.01986 * 0.41425 * 19 18 17 21 21 C 1.30496 * 109.25580 * 359.74089 * 20 19 18 22 22 C 1.53782 * 87.08316 * 334.56642 * 15 14 12 23 23 C 1.38752 * 119.88933 * 179.78863 * 5 4 2 24 24 C 1.38132 * 119.94196 * 0.44696 * 23 5 4 25 25 C 1.38289 * 120.05325 * 359.80728 * 24 23 5 26 26 C 1.38161 * 120.02914 * 104.99890 * 4 2 1 27 27 H 0.96709 * 113.99981 * 299.99759 * 1 2 3 28 28 H 1.09000 * 109.47411 * 120.00370 * 2 1 3 29 29 H 1.48498 * 110.00336 * 178.68657 * 3 2 1 30 30 H 1.48504 * 109.99873 * 300.00510 * 3 2 1 31 31 H 1.08998 * 109.46853 * 299.99973 * 7 6 5 32 32 H 1.08996 * 109.46730 * 59.99882 * 7 6 5 33 33 H 0.97006 * 120.00138 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47508 * 300.00168 * 11 10 8 35 35 H 1.08996 * 109.47158 * 60.00741 * 11 10 8 36 36 H 1.08995 * 113.61272 * 254.52677 * 14 12 11 37 37 H 1.09002 * 113.61674 * 25.34678 * 14 12 11 38 38 H 1.07993 * 126.59549 * 359.97438 * 18 17 15 39 39 H 1.07999 * 125.99091 * 180.18861 * 19 18 17 40 40 H 1.07996 * 125.64861 * 179.97438 * 21 20 19 41 41 H 1.09004 * 113.61435 * 270.88961 * 22 15 14 42 42 H 1.08998 * 113.61600 * 139.97737 * 22 15 14 43 43 H 1.08000 * 120.03396 * 180.23325 * 23 5 4 44 44 H 1.07997 * 119.97280 * 179.78273 * 24 23 5 45 45 H 1.08004 * 119.94193 * 180.02562 * 25 24 23 46 46 H 1.07999 * 119.97562 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.8749 -2.0943 -1.3047 6 8 1.3663 -2.8113 -0.2683 7 6 1.3390 -4.2326 -0.4143 8 6 0.7470 -4.8535 0.8248 9 8 0.3839 -4.1483 1.7422 10 7 0.6203 -6.1924 0.9128 11 6 0.0453 -6.7961 2.1175 12 6 0.0159 -8.3178 1.9612 13 1 0.9388 -8.7181 1.5414 14 6 -0.4587 -9.0576 3.2230 15 6 -1.2331 -9.9983 2.2848 16 1 -0.6524 -10.8589 1.9527 17 7 -2.5602 -10.3646 2.7856 18 6 -3.0057 -11.6306 3.0548 19 6 -4.2728 -11.5123 3.4953 20 7 -4.5953 -10.2103 3.4864 21 6 -3.5744 -9.5170 3.0623 22 6 -1.2548 -8.8417 1.2714 23 6 2.3341 -2.7452 -2.4408 24 6 2.8546 -2.0144 -3.4911 25 6 2.9145 -0.6350 -3.4125 26 6 2.4536 0.0160 -2.2834 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 0.8899 29 1 3.5346 1.7703 0.0320 30 1 1.5614 2.4679 -1.2085 31 1 0.7313 -4.4973 -1.2796 32 1 2.3542 -4.6028 -0.5562 33 1 0.9104 -6.7564 0.1789 34 1 0.6539 -6.5318 2.9823 35 1 -0.9697 -6.4256 2.2606 36 1 0.3459 -9.5505 3.7687 37 1 -1.1000 -8.4557 3.8668 38 1 -2.4476 -12.5478 2.9386 39 1 -4.9176 -12.3237 3.7988 40 1 -3.5454 -8.4432 2.9508 41 1 -2.1150 -8.1812 1.3810 42 1 -1.0928 -9.1603 0.2417 43 1 2.2878 -3.8224 -2.5025 44 1 3.2154 -2.5207 -4.3742 45 1 3.3214 -0.0654 -4.2350 46 1 2.5015 1.0933 -2.2245 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:51:13 Heat of formation + Delta-G solvation = 26.239191 kcal Electronic energy + Delta-G solvation = -28686.612864 eV Core-core repulsion = 24545.808196 eV Total energy + Delta-G solvation = -4140.804668 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.09733 -41.67320 -40.79251 -39.83522 -38.51041 -37.50369 -35.82571 -33.52053 -32.97102 -31.50741 -30.49410 -30.11304 -28.02827 -26.84637 -26.69284 -24.62596 -23.55493 -22.56610 -22.48981 -21.90982 -21.60978 -20.19437 -19.41675 -18.79923 -18.43813 -17.94826 -17.48933 -17.40058 -16.91773 -16.81676 -16.54805 -16.03889 -15.88348 -15.75152 -15.33908 -15.16398 -15.06159 -14.89948 -14.68251 -14.44997 -14.41696 -14.09701 -13.79556 -13.62952 -13.61060 -13.37023 -13.11911 -13.05975 -12.74748 -12.21296 -12.14294 -12.02972 -11.86052 -11.77159 -11.63244 -11.02147 -10.95766 -10.48294 -10.27357 -10.22707 -10.11401 -9.46906 -9.33608 -4.97896 0.08082 0.27657 1.09689 1.26774 1.41725 1.43978 1.59936 1.88342 1.88981 2.19883 2.52436 2.56079 3.26536 3.32921 3.43947 3.55741 3.62295 3.67513 3.68182 3.82231 3.85656 3.94877 3.98296 4.02988 4.05904 4.11238 4.15963 4.22369 4.27986 4.39810 4.44393 4.53431 4.59255 4.63609 4.70734 4.71205 4.80661 4.84567 4.91951 4.95368 5.15125 5.17265 5.22815 5.29529 5.36714 5.45300 5.60602 5.82686 6.18980 6.28685 6.43021 6.85510 7.10085 7.13716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.078 4.078 3 Si 0.779 3.221 4 C -0.137 4.137 5 C 0.133 3.867 6 O -0.308 6.308 7 C 0.033 3.967 8 C 0.512 3.488 9 O -0.570 6.570 10 N -0.706 5.706 11 C 0.132 3.868 12 C -0.100 4.100 13 H 0.133 0.867 14 C -0.136 4.136 15 C 0.103 3.897 16 H 0.148 0.852 17 N -0.445 5.445 18 C -0.047 4.047 19 C -0.067 4.067 20 N -0.544 5.544 21 C 0.173 3.827 22 C -0.138 4.138 23 C -0.207 4.207 24 C -0.073 4.073 25 C -0.158 4.158 26 C -0.105 4.105 27 H 0.397 0.603 28 H 0.065 0.935 29 H -0.286 1.286 30 H -0.282 1.282 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.422 0.578 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.204 0.796 39 H 0.174 0.826 40 H 0.216 0.784 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.147 0.853 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -5.014 -4.077 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.187 4.187 3 Si 0.683 3.317 4 C -0.138 4.138 5 C 0.088 3.912 6 O -0.221 6.221 7 C -0.045 4.045 8 C 0.298 3.702 9 O -0.448 6.448 10 N -0.361 5.361 11 C 0.008 3.992 12 C -0.119 4.119 13 H 0.151 0.849 14 C -0.175 4.175 15 C 0.001 3.999 16 H 0.166 0.834 17 N -0.127 5.127 18 C -0.180 4.180 19 C -0.214 4.214 20 N -0.263 5.263 21 C -0.110 4.110 22 C -0.176 4.176 23 C -0.225 4.225 24 C -0.090 4.090 25 C -0.176 4.176 26 C -0.123 4.123 27 H 0.247 0.753 28 H 0.083 0.917 29 H -0.213 1.213 30 H -0.209 1.209 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.191 0.809 40 H 0.232 0.768 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.183 0.817 44 H 0.179 0.821 45 H 0.165 0.835 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.795 -3.842 -3.994 8.768 hybrid contribution 0.576 -1.091 -0.525 1.341 sum 7.371 -4.933 -4.519 9.954 Atomic orbital electron populations 1.86441 1.17657 1.82556 1.50580 1.24836 0.85687 1.11467 0.96683 0.94165 0.77468 0.75224 0.84795 1.19047 1.05688 0.91522 0.97515 1.18975 0.93877 0.90723 0.87664 1.86165 1.77963 1.18920 1.39027 1.22773 1.04707 0.79586 0.97405 1.20436 0.78478 0.83163 0.88137 1.90771 1.50053 1.62619 1.41376 1.45623 1.63870 1.05324 1.21296 1.21341 0.98476 0.92270 0.87076 1.22550 0.99737 0.92228 0.97348 0.84878 1.23429 1.00249 0.97069 0.96768 1.23416 0.80384 0.99372 0.96751 0.83400 1.45773 1.12884 1.06466 1.47529 1.23229 0.97522 0.89587 1.07710 1.22680 0.96435 0.94114 1.08159 1.70261 1.29296 1.05544 1.21159 1.25132 0.83688 0.98906 1.03266 1.23555 0.98376 0.95795 0.99850 1.21687 1.04995 1.02206 0.93617 1.21430 0.95417 0.93558 0.98636 1.21373 1.02347 0.95731 0.98194 1.21013 0.98435 0.99304 0.93536 0.75325 0.91665 1.21253 1.20949 0.86169 0.85681 0.73993 0.91918 0.92321 0.88724 0.89971 0.77921 0.80886 0.76795 0.89709 0.88214 0.81705 0.82061 0.83477 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.66 12.86 -148.98 -1.92 -6.58 16 2 C -0.08 -0.56 2.37 71.24 0.17 -0.39 16 3 Si 0.78 1.68 30.20 68.60 2.07 3.75 16 4 C -0.14 -1.27 5.30 -19.77 -0.10 -1.38 16 5 C 0.13 0.92 6.66 22.51 0.15 1.07 16 6 O -0.31 -2.44 9.00 -73.42 -0.66 -3.10 16 7 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 8 C 0.51 0.84 7.91 87.66 0.69 1.53 16 9 O -0.57 -7.75 16.50 16.02 0.26 -7.49 16 10 N -0.71 5.16 5.56 -463.07 -2.57 2.59 16 11 C 0.13 -0.83 5.51 86.38 0.48 -0.36 16 12 C -0.10 1.27 3.75 -10.27 -0.04 1.23 16 13 H 0.13 -2.30 8.14 -2.39 -0.02 -2.32 16 14 C -0.14 1.35 7.32 31.12 0.23 1.57 16 15 C 0.10 -0.97 4.64 45.52 0.21 -0.76 16 16 H 0.15 -2.03 8.14 -2.39 -0.02 -2.05 16 17 N -0.44 0.68 2.94 -503.81 -1.48 -0.81 16 18 C -0.05 0.00 11.58 83.09 0.96 0.96 16 19 C -0.07 -0.42 11.87 83.52 0.99 0.57 16 20 N -0.54 -5.82 11.25 -200.31 -2.25 -8.08 16 21 C 0.17 0.63 11.38 180.26 2.05 2.68 16 22 C -0.14 1.56 7.19 31.12 0.22 1.79 16 23 C -0.21 0.00 9.04 22.37 0.20 0.21 16 24 C -0.07 0.06 10.04 22.26 0.22 0.28 16 25 C -0.16 -0.39 10.04 22.28 0.22 -0.17 16 26 C -0.11 -0.75 8.66 22.25 0.19 -0.56 16 27 H 0.40 -0.64 8.74 -74.05 -0.65 -1.29 16 28 H 0.07 0.51 7.82 -2.39 -0.02 0.49 16 29 H -0.29 -1.95 7.11 99.48 0.71 -1.25 16 30 H -0.28 -2.00 6.75 99.48 0.67 -1.33 16 31 H 0.12 -1.01 7.65 -2.39 -0.02 -1.03 16 32 H 0.13 -1.20 7.67 -2.39 -0.02 -1.22 16 33 H 0.42 -6.46 8.47 -92.70 -0.79 -7.25 16 34 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.06 -0.15 7.84 -2.39 -0.02 -0.17 16 36 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 37 H 0.08 -0.51 7.87 -2.39 -0.02 -0.53 16 38 H 0.20 -1.44 8.06 -2.91 -0.02 -1.47 16 39 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.22 -0.31 7.43 -2.91 -0.02 -0.33 16 41 H 0.08 -0.70 6.67 -2.38 -0.02 -0.72 16 42 H 0.10 -1.36 8.14 -2.39 -0.02 -1.38 16 43 H 0.17 -1.32 6.30 -2.91 -0.02 -1.34 16 44 H 0.16 -1.20 8.06 -2.91 -0.02 -1.22 16 45 H 0.15 -0.31 8.06 -2.91 -0.02 -0.34 16 46 H 0.12 0.80 4.90 -2.91 -0.01 0.79 16 Total: 0.00 -36.12 384.95 0.27 -35.85 By element: Atomic # 1 Polarization: -24.29 SS G_CDS: -0.41 Total: -24.70 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 7.23 Total: 8.56 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -6.31 Total: -6.30 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -2.31 Total: -17.17 kcal Atomic # 14 Polarization: 1.68 SS G_CDS: 2.07 Total: 3.75 kcal Total: -36.12 0.27 -35.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.090 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds