Wall clock time and date at job start Sun Mar 7 2021 07:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38731 * 119.94303 * 0.55323 * 6 5 4 8 8 O 1.35900 * 120.05280 * 179.74897 * 7 6 5 9 9 C 1.42897 * 117.00207 * 359.97334 * 8 7 6 10 10 C 1.53005 * 109.47223 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47105 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99787 * 179.97438 * 11 10 9 14 14 C 1.46491 * 119.99579 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46897 * 180.02562 * 14 13 11 16 16 H 1.08996 * 112.85005 * 316.19858 * 15 14 13 17 17 C 1.53777 * 113.61230 * 87.50648 * 15 14 13 18 18 C 1.53782 * 87.08177 * 139.98062 * 17 15 14 19 19 H 1.09005 * 113.68808 * 89.12615 * 18 17 15 20 20 N 1.46495 * 113.61209 * 220.01452 * 18 17 15 21 21 C 1.36890 * 126.39594 * 217.20884 * 20 18 17 22 22 C 1.34671 * 106.81673 * 179.84818 * 21 20 18 23 23 N 1.34131 * 108.02015 * 0.41939 * 22 21 20 24 24 C 1.30502 * 109.25597 * 359.73736 * 23 22 21 25 25 C 1.53784 * 87.08114 * 334.56667 * 18 17 15 26 26 C 1.38728 * 119.89302 * 359.72113 * 7 6 5 27 27 C 1.38154 * 119.93919 * 0.02562 * 26 7 6 28 28 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 29 29 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 30 30 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 31 31 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 32 32 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.02568 * 180.27470 * 6 5 4 34 34 H 1.08998 * 109.47221 * 300.00355 * 9 8 7 35 35 H 1.09003 * 109.47106 * 60.00320 * 9 8 7 36 36 H 1.08998 * 109.47207 * 300.00236 * 10 9 8 37 37 H 1.09003 * 109.46922 * 60.00080 * 10 9 8 38 38 H 0.96996 * 119.99855 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47462 * 300.00303 * 14 13 11 40 40 H 1.09003 * 109.47191 * 60.00468 * 14 13 11 41 41 H 1.09000 * 113.61428 * 254.53107 * 17 15 14 42 42 H 1.08998 * 113.61815 * 25.43414 * 17 15 14 43 43 H 1.07991 * 126.59013 * 359.97438 * 21 20 18 44 44 H 1.07999 * 125.98949 * 180.12201 * 22 21 20 45 45 H 1.08002 * 125.64717 * 179.97438 * 24 23 22 46 46 H 1.08998 * 113.60951 * 270.88296 * 25 18 17 47 47 H 1.08994 * 113.68989 * 139.99081 * 25 18 17 48 48 H 1.07991 * 120.03247 * 180.02562 * 26 7 6 49 49 H 1.07997 * 119.96817 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8536 -2.0146 -3.4891 8 8 3.3070 -2.6554 -4.5984 9 6 4.1235 -1.9003 -5.4957 10 6 4.5346 -2.7824 -6.6763 11 6 5.3951 -1.9858 -7.6229 12 8 5.6544 -0.8268 -7.3772 13 7 5.8773 -2.5617 -8.7420 14 6 6.7143 -1.7874 -9.6618 15 6 7.1253 -2.6695 -10.8425 16 1 7.4362 -3.6684 -10.5365 17 6 6.1100 -2.6651 -11.9975 18 6 7.3151 -2.6403 -12.9525 19 1 7.6781 -3.6312 -13.2254 20 7 7.1274 -1.7640 -14.1114 21 6 7.5622 -2.0008 -15.3876 22 6 7.1760 -0.9475 -16.1325 23 7 6.5313 -0.0866 -15.3311 24 6 6.4984 -0.5690 -14.1190 25 6 8.1084 -1.9872 -11.8083 26 6 2.0559 -2.6877 -2.5752 27 6 1.5963 -2.0340 -1.4482 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5616 2.4679 -1.2086 32 1 2.9776 0.9996 -1.9728 33 1 3.8089 -0.1603 -3.9785 34 1 3.5616 -1.0413 -5.8627 35 1 5.0149 -1.5546 -4.9723 36 1 5.0963 -3.6415 -6.3097 37 1 3.6429 -3.1277 -7.1996 38 1 5.6702 -3.4887 -8.9383 39 1 6.1524 -0.9285 -10.0287 40 1 7.6058 -1.4418 -9.1384 41 1 5.5195 -3.5789 -12.0632 42 1 5.5007 -1.7623 -12.0398 43 1 8.1080 -2.8669 -15.7314 44 1 7.3581 -0.8164 -17.1890 45 1 6.0438 -0.0915 -13.2636 46 1 8.0454 -0.8990 -11.7990 47 1 9.1315 -2.3527 -11.7204 48 1 1.7945 -3.7218 -2.7445 49 1 0.9750 -2.5575 -0.7367 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17567772_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:51:20 Heat of formation + Delta-G solvation = 14.990218 kcal Electronic energy + Delta-G solvation = -29626.284409 eV Core-core repulsion = 25329.454329 eV Total energy + Delta-G solvation = -4296.830079 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.11689 -41.50940 -40.95505 -39.89808 -39.14100 -37.25773 -35.83607 -33.72545 -33.30070 -32.21200 -31.65988 -30.38732 -29.02960 -26.88741 -26.56480 -25.63190 -24.44924 -23.49784 -22.50844 -22.16861 -21.91162 -21.44924 -20.21488 -19.61938 -18.61505 -18.37497 -17.88269 -17.60207 -17.26844 -17.02528 -16.77494 -16.68965 -16.22910 -16.08039 -15.82699 -15.56403 -15.24696 -14.98168 -14.79250 -14.74931 -14.68240 -14.45442 -14.37728 -14.05246 -13.93735 -13.69389 -13.63700 -13.39923 -13.18735 -12.99105 -12.86936 -12.50865 -12.16503 -12.05084 -11.97608 -11.82898 -11.81461 -11.65423 -11.10385 -10.98005 -10.50401 -10.32119 -10.20958 -10.19078 -9.48868 -9.32661 -4.98864 0.10295 0.16002 1.07740 1.28948 1.47007 1.59595 1.61525 1.86258 1.94740 2.17877 2.41507 2.49635 3.25353 3.33041 3.36650 3.50467 3.58539 3.59951 3.63613 3.71126 3.79824 3.81025 3.89630 3.94541 3.96862 4.08803 4.11615 4.22147 4.25964 4.34013 4.42000 4.43178 4.55836 4.57508 4.60775 4.61321 4.69010 4.69679 4.69745 4.78859 4.80220 4.90172 4.93054 5.04475 5.10843 5.16528 5.31476 5.35158 5.43966 5.57581 5.80738 6.18010 6.26487 6.41143 6.92134 7.11217 7.11603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.069 4.069 3 Si 0.769 3.231 4 C -0.130 4.130 5 C -0.104 4.104 6 C -0.211 4.211 7 C 0.124 3.876 8 O -0.315 6.315 9 C 0.070 3.930 10 C -0.131 4.131 11 C 0.517 3.483 12 O -0.589 6.589 13 N -0.711 5.711 14 C 0.130 3.870 15 C -0.101 4.101 16 H 0.131 0.869 17 C -0.137 4.137 18 C 0.103 3.897 19 H 0.148 0.852 20 N -0.445 5.445 21 C -0.047 4.047 22 C -0.066 4.066 23 N -0.544 5.544 24 C 0.172 3.828 25 C -0.137 4.137 26 C -0.151 4.151 27 C -0.054 4.054 28 H 0.404 0.596 29 H 0.098 0.902 30 H -0.292 1.292 31 H -0.303 1.303 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.421 0.579 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.204 0.796 44 H 0.174 0.826 45 H 0.215 0.785 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.154 0.846 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -8.265 4.153 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.179 4.179 3 Si 0.677 3.323 4 C -0.130 4.130 5 C -0.121 4.121 6 C -0.230 4.230 7 C 0.079 3.921 8 O -0.229 6.229 9 C -0.005 4.005 10 C -0.170 4.170 11 C 0.304 3.696 12 O -0.469 6.469 13 N -0.364 5.364 14 C 0.006 3.994 15 C -0.120 4.120 16 H 0.149 0.851 17 C -0.175 4.175 18 C 0.001 3.999 19 H 0.165 0.835 20 N -0.126 5.126 21 C -0.181 4.181 22 C -0.213 4.213 23 N -0.263 5.263 24 C -0.110 4.110 25 C -0.175 4.175 26 C -0.169 4.169 27 C -0.072 4.072 28 H 0.255 0.745 29 H 0.116 0.884 30 H -0.219 1.219 31 H -0.232 1.232 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.259 0.741 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.221 0.779 44 H 0.191 0.809 45 H 0.232 0.768 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.171 0.829 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.529 -6.721 3.144 7.576 hybrid contribution 0.597 -0.748 -0.509 1.084 sum 2.126 -7.469 2.635 8.200 Atomic orbital electron populations 1.86437 1.17126 1.82314 1.51454 1.24655 0.85877 1.10193 0.97184 0.94602 0.77157 0.75976 0.84603 1.19654 1.00611 0.95505 0.97215 1.20803 0.98314 0.98669 0.94336 1.21316 1.06113 0.95027 1.00552 1.19132 0.94669 0.90921 0.87418 1.85957 1.65213 1.40388 1.31334 1.22478 0.93930 0.94329 0.89799 1.21433 1.02125 0.99445 0.94005 1.20641 0.79826 0.86872 0.82248 1.90754 1.60829 1.19536 1.75812 1.45798 1.51807 1.16787 1.21994 1.21325 0.94219 0.94224 0.89652 1.22547 0.96494 1.01002 0.91922 0.85090 1.23540 0.96059 1.04611 0.93292 1.23415 0.99578 0.94984 0.81950 0.83451 1.45772 1.40966 1.16855 1.09047 1.23234 1.06881 1.03667 0.84281 1.22676 1.04268 0.93425 1.00932 1.70263 1.21648 1.31843 1.02513 1.25128 1.01750 0.86405 0.97739 1.23432 0.99979 1.01026 0.93094 1.20797 1.00151 1.01934 0.94066 1.21080 0.96483 0.93211 0.96397 0.74514 0.88383 1.21926 1.23166 0.86754 0.84746 0.92167 0.91887 0.85093 0.85307 0.74116 0.92353 0.92034 0.88320 0.89675 0.77926 0.80859 0.76813 0.89987 0.88777 0.82853 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.14 12.74 -148.98 -1.90 -2.04 16 2 C -0.07 -0.04 2.81 71.23 0.20 0.16 16 3 Si 0.77 0.05 29.78 68.60 2.04 2.10 16 4 C -0.13 -0.83 5.42 -19.85 -0.11 -0.94 16 5 C -0.10 -0.91 8.66 22.26 0.19 -0.71 16 6 C -0.21 -1.75 9.04 22.37 0.20 -1.55 16 7 C 0.12 0.87 6.69 22.50 0.15 1.02 16 8 O -0.32 -1.45 10.14 -92.43 -0.94 -2.39 16 9 C 0.07 0.15 4.03 71.98 0.29 0.44 16 10 C -0.13 0.64 6.07 29.85 0.18 0.83 16 11 C 0.52 -0.26 7.83 87.66 0.69 0.43 16 12 O -0.59 -5.77 15.98 -3.02 -0.05 -5.82 16 13 N -0.71 5.22 5.56 -463.07 -2.57 2.65 16 14 C 0.13 -0.81 5.51 86.38 0.48 -0.33 16 15 C -0.10 1.22 3.75 -10.27 -0.04 1.19 16 16 H 0.13 -2.13 8.14 -2.39 -0.02 -2.15 16 17 C -0.14 1.48 7.18 31.12 0.22 1.70 16 18 C 0.10 -0.92 4.64 45.52 0.21 -0.71 16 19 H 0.15 -1.93 8.14 -2.38 -0.02 -1.95 16 20 N -0.44 0.53 2.94 -503.80 -1.48 -0.95 16 21 C -0.05 -0.02 11.58 83.09 0.96 0.94 16 22 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 23 N -0.54 -5.92 11.25 -200.30 -2.25 -8.18 16 24 C 0.17 0.67 11.37 180.26 2.05 2.72 16 25 C -0.14 1.28 7.32 31.12 0.23 1.51 16 26 C -0.15 -0.71 9.99 22.37 0.22 -0.49 16 27 C -0.05 -0.24 9.60 22.26 0.21 -0.03 16 28 H 0.40 -4.21 8.74 -74.06 -0.65 -4.86 16 29 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 30 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 31 H -0.30 -2.59 7.11 99.48 0.71 -1.88 16 32 H 0.12 0.96 4.87 -2.91 -0.01 0.95 16 33 H 0.13 0.92 6.30 -2.91 -0.02 0.90 16 34 H 0.06 0.27 7.62 -2.39 -0.02 0.25 16 35 H 0.06 0.24 7.62 -2.39 -0.02 0.22 16 36 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 37 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H 0.42 -6.01 8.47 -92.71 -0.79 -6.79 16 39 H 0.06 -0.16 7.84 -2.39 -0.02 -0.18 16 40 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 42 H 0.08 -0.67 6.68 -2.39 -0.02 -0.69 16 43 H 0.20 -1.38 8.06 -2.92 -0.02 -1.40 16 44 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 45 H 0.22 -0.28 7.44 -2.91 -0.02 -0.30 16 46 H 0.08 -0.49 7.86 -2.39 -0.02 -0.50 16 47 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H 0.15 0.06 8.06 -2.92 -0.02 0.03 16 49 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -31.73 406.62 -0.23 -31.96 By element: Atomic # 1 Polarization: -23.66 SS G_CDS: -0.41 Total: -24.08 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 7.34 Total: 6.75 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -6.31 Total: -6.48 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -2.88 Total: -10.25 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.04 Total: 2.10 kcal Total: -31.73 -0.23 -31.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17567772_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.948 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds